rna9409, rna9409 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9409
Unique Name	rna9409
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2595
Alignment location	KK037253.1:199479..200433 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101345g1.7066.mrna
Orig protein id	gnl\|cribi\|Naga_101345g1.7066
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:199479..200433 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101345g1	gene9129	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9409	rna9409-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21293.1	cds9379	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:199479..200433-
coding sequence from alignment at KK037253.1:199479..200433-

mRNA sequence

>rna9409 ID=rna9409|Name=rna9409|organism=Nannochloropsis gaditana|type=mRNA|length=2595bp
ATGGCCACGCACGATCCCGGGGGACAGCAATACGATTTCTTGGAGTTCGA
GACCCCGGGCTATGATGAGGAGGACGACGCTTACACTCCTTTCGGCCGGG
GCGGGGACGGAGGGACTTATGAGCCTGGAGCCCGTAAGGAGGGCACCGGG
GCCGCAGCTTTTTTGGGCCTACCACAAGAATGGACCGCAGCGTCTGCGGC
CTCCTTGCCACGTGCTCCCCTTGGCAAGCAAGAGCAGCCACGGGGGTCAG
GGAAGGAAGAAGAGAACGGGGGGCTAGGGCATGTGACGGCTGGCATCAAA
GCCCTGCATTTACAAAACGACGCGCACAACGGGCACGACGCGGAGGAAGA
GGACGGGGCGGGGAGCTTGGGAAGCAGTAGTGACGAAGAACTAGGGGAGG
ACGCGTCCCACCTACAGGAACACGAGGAGGAGGAGGAGGGAGAGGGCCTG
GACACACCGGAGTACGCCTGTCGATACTGCGGGATCCACGACCCGGCCTG
TGTGGTGCGTTGCGTGGAGAGCAACAAGTGGTTCTGCAATTCCCGGTGGA
ACACGACGGGGTCCCACATCATCCAGCACCTGGTTAAGGCGCGGAACAAG
ACGGTTGCCTTGCACCCTCAGAGCCCCCTGGGCGATACGGTCCTGGAATG
CTACAACTGCGGCTGCCGCAACGTCTTCCTCCTGGGCTTCATTCCCGCCA
AGTCGGACTCGGTGGTGGTGTTGCTGTGCAGGGAGCCCTGCTTGAGCAAC
GGGGCGTTGAAGGACCTGGACTGGGACCTGGCCCAGTGGATGCCTTTGAT
CGAAGACCGGGCGTTCCTGCCCTGGTTGGTCCGGGTACCCTCGGAGCAAG
AGCAGCTCCGAGCCCGACAAATCACGGCGGGGCAGATCCAGAAGCTGGAG
GAGGCGTGGAAAGAGAACGCGGAGGCGACCTTGGAGGAAGTGGAGCGGCA
GGGCGGGGAAGGGGAGGAGGAAGGGGTGGCAGTCCTGCTCAAGTACGAGG
ACGGCTACCACTACCAGAACGTGCTCGCCCCCCTGGTGAAGATGGAGGCG
GACTACGACAAGAAGATGAAGGAACAGCAGAGCCAGGACGGGGTAAGCGT
GACCTGGGACGAGGGTCTGAGCAAGCGGAAAGTCGCTTCCTTCCGGTTCG
GGCGGGGGGAGGAGGAGGCGGGACTGACGGTGGGGGACGAGCTCCGCCTC
AAGCTGGACGTGTTGACGGCGCGTATGCACGGGGTGAACGGCGGCCAGGC
CTGGGAGGGCGTGGGCAATGTCCTGCGGATGGCGGACGGGGAGGTGAGTC
TGGAGATGCGGGTCTCGCACTGCCCGACCGAGGTCCGGGACGGCTTCTCC
GTAGAGTTTGTCTGGAAGTCCACCAGTTTCGACCGGATGCAAGGCGCGCT
CAAGACCTTTGCCGTGGACGACGCCTCCATCTCCGGGTACCTGTACCACA
AGCTCCTGGGCCACGAGGTGGAGCCGCAGACCTTGCGGGTGAGCCTCCCC
AAGAGATTCTCGGTGCCCCATCTCCCCGACTTGAACCACTCGCAGTTCCA
GGCCGTGAAAAGCGTGCTCCAGAAACCCCTCTCCCTCATTCAGGGCCCCC
CGGGGACGGGCAAGACGGTCACCTCCGCCTCCATCGTCTACCACTTGGCC
CAGCAGGGGGTGGGGCAGGTCCTGGTGGTGGCACCCTCCAATGTCGCCGT
GGACCATCTCACCGAGAAGATCCACGCCACGGGCCTGAAGGTGGTCCGGC
TGGCGGCCAAGTCCCGGGAGGGCGTCGACTCTTCCGTGGACCACCTCTGC
CTGCACACCATGATCACTACCCTGGCCACGCCGGAGCAGGAGGAACTCTC
CAAACTCCGGCAGTTGAAGGCCGAGCTGGGGGAACTGGTCCCGCAGGACG
AGGCCAAGTTCCGCAAGTTGAAGACGGCGGTGGGCCGGGAGGTGCTCAAG
GCGGCGGACGTGATCTGCTGCACCTGCGTCGGAGCGGGGGACCCTCGGCT
GAAGAATTTTCGCTTCCGCCAAGTCCTGATCGACGAAGCCACCCAGGCGA
TGGAGGCGGAGTGCCTGATCCCCATCGTCATGGGCTGCAAGCAGCTGATC
ATGGTGGGGGACCATTGCCAACTACCCCCCGTCATCACGTGCAAGAAGGC
GGCGAAAGCGGGACTGACCCAGTCACTCTTTGAGCGCCTCATCATCTTGG
GCCACCGGCCCCACCGGCTTCAGGTTCAATACCGGATGCATCCCTGCCTG
TCCGCGTTTCCTTCCAACATGTTTTATGAAGGCACCCTCCAGAACGGCAT
CACGGAGGACGAACGCAGCCCGGACCGGGTCTCCTTCCCCTGGCCCACGC
CCACCAAGCCCATGTTCTTCTGGATCCAGACGGGGGCGGAGGAGCTGTCC
TCCTCGGGGACCTCGTACTTGAACCGGAGCGAGGCTTCGGCCACGGAGAG
GATCTGCACGGCCTTGCTCAAGGTGGGGGTAGAGGCGGGGAAGATTGGGG
TGATCACGCCCTACCAGGGCCAGCGGGCGCACCTGATCTTGCACATGGCC
CGCACGGGGCCGGCATCGGCTTCCTGGCGGACCCTCGCCGGTTGA

protein sequence of rna9409

>rna9409-protein ID=rna9409-protein|Name=rna9409|organism=Nannochloropsis gaditana|type=polypeptide|length=215bp
MNGGRHPRPSGVIAPDQDLNDIPEATVLSGPPTGGNSHASTSHQSTIPAA
QMAYTIAQPTHPPSHPTAPSPMVMYPTQGGGYPPRQGPVVVDDSVMAQYL
AQQGGSVPPPPPGGGSCDERRFITYQAQQSDAPSGAWRDHVIFYFLSSPP
FAPPPSLPTVRLLYGRGQYLHAYLASRRTRALALLSIFTGSSLLIMYFLM
SRRRGKAAGALGHDG

mRNA from alignment at KK037253.1:199479..200433-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9409 ID=rna9409|Name=rna9409|organism=Nannochloropsis gaditana|type=mRNA|length=955bp|location=Sequence derived from alignment at KK037253.1:199479..200433- (Nannochloropsis gaditana)
CACAGTCTTGTACCATTCTCCCACGGGCGGGGGTTCCGACCACACAGACG
ACCATACATACTTTCCCCTTGCCCCTTCCTCGAAAAAGCGTCACGCATGA
ACGGTGGCCGTCATCCCCGCCCATCCGGGGTCATCGCGCCAGATCAAGAC
CTGAACGATATACCCGAAGCCACGGTACTGTCAGGTCCCCCTACCGGAGG
GAATTCCCACGCAAGCACAAGTCATCAATCTACTATCCCCGCCGCCCAGA
TGGCGTACACTATTGCACAACCAACGCACCCCCCATCCCATCCCACTGCC
CCGTCGCCCATGGTCATGTACCCGACACAAGGAGGAGGGTACCCCCCTCG
ACAAGGCCCGGTTGTCGTTGACGACAGCGTCATGGCGCAGTACCTGGCCC
AACAGGGGGGGTCTGTCCCCCCCCCTCCTCCGGGTAGGGTGGGACGGGGC
GCGGGGGGGACGGAACGGTCGATCGTGTGCATTCGTTCTAAGAAGCGGAG
ATCTTAAGGGGGGGGAAGCTGTGATGAACGACGTTTCATAACATATCAAG
CTCAACAGTCTGACGCCCCTAGTGGGGCCTGGCGAGATCATGTCATCTTC
TATTTCCTGAGCTCCCCCCCCTTTGCCCCCCCCCCCTCCCTGCCAACCGT
GAAAAGAAAACGAGCCACCCAACCCACGCCACCCTCTCTTTCCCTTTCGT
CCTCCAGATCACATGCCCCTGGCCGTCTGCTCCTGCCTGTGCTGCTGGCC
TCTGGCGATCCTCGCCATCTTCAACAGCCGCCAGGTCCGTCTCCTCTACG
GTCGGGGACAATACCTTCATGCCTACCTGGCCTCCCGACGTACCCGGGCC
CTGGCCCTTCTCTCCATTTTCACCGGCTCTTCCCTCCTCATCATGTATTT
CCTCATGTCCCGGCGACGGGGGAAAGCCGCGGGCGCGCTGGGCCACGATG
GTTGA

Coding sequence (CDS) from alignment at KK037253.1:199479..200433-

>rna9409 ID=rna9409|Name=rna9409|organism=Nannochloropsis gaditana|type=CDS|length=1944bp|location=Sequence derived from alignment at KK037253.1:199479..200433- (Nannochloropsis gaditana)
GTCCGTCTCCTCTACGGTCGGGGACAATACCTTCATGCCTACCTGGCCTC
CCGACGTACCCGGGCCCTGGCCCTTCTCTCCATTTTCACCGGCTCTTCCC
TCCTCATCATGTATTTCCTCATGTCCCGGCGACGGGGGAAAGCCGCGGGC
GCGCTGGGCCACGATGGTTGAGGGGGGGAAGCTGTGATGAACGACGTTTC
ATAACATATCAAGCTCAACAGTCTGACGCCCCTAGTGGGGCCTGGCGAGA
TCATGTCATCTTCTATTTCCTGAGCTCCCCCCCCTTTGCCCCCCCCCCCT
CCCTGCCAACCATGAACGGTGGCCGTCATCCCCGCCCATCCGGGGTCATC
GCGCCAGATCAAGACCTGAACGATATACCCGAAGCCACGGTACTGTCAGG
TCCCCCTACCGGAGGGAATTCCCACGCAAGCACAAGTCATCAATCTACTA
TCCCCGCCGCCCAGATGGCGTACACTATTGCACAACCAACGCACCCCCCA
TCCCATCCCACTGCCCCGTCGCCCATGGTCATGTACCCGACACAAGGAGG
AGGGTACCCCCCTCGACAAGGCCCGGTTGTCGTTGACGACAGCGTCATGG
CGCAGTACCTGGCCCAACAGGGGGGGTCTGTCCCCCCCCCTCCTCCGGGT
CCGTCTCCTCTACGGTCGGGGACAATACCTTCATGCCTACCTGGCCTCCC
GACGTACCCGGGCCCTGGCCCTTCTCTCCATTTTCACCGGCTCTTCCCTC
CTCATCATGTATTTCCTCATGTCCCGGCGACGGGGGAAAGCCGCGGGCGC
GCTGGGCCACGATGGTTGAGGGGGGGAAGCTGTGATGAACGACGTTTCAT
AACATATCAAGCTCAACAGTCTGACGCCCCTAGTGGGGCCTGGCGAGATC
ATGTCATCTTCTATTTCCTGAGCTCCCCCCCCTTTGCCCCCCCCCCCTCC
CTGCCAACCATGAACGGTGGCCGTCATCCCCGCCCATCCGGGGTCATCGC
GCCAGATCAAGACCTGAACGATATACCCGAAGCCACGGTACTGTCAGGTC
CCCCTACCGGAGGGAATTCCCACGCAAGCACAAGTCATCAATCTACTATC
CCCGCCGCCCAGATGGCGTACACTATTGCACAACCAACGCACCCCCCATC
CCATCCCACTGCCCCGTCGCCCATGGTCATGTACCCGACACAAGGAGGAG
GGTACCCCCCTCGACAAGGCCCGGTTGTCGTTGACGACAGCGTCATGGCG
CAGTACCTGGCCCAACAGGGGGGGTCTGTCCCCCCCCCTCCTCCGGGTCC
GTCTCCTCTACGGTCGGGGACAATACCTTCATGCCTACCTGGCCTCCCGA
CGTACCCGGGCCCTGGCCCTTCTCTCCATTTTCACCGGCTCTTCCCTCCT
CATCATGTATTTCCTCATGTCCCGGCGACGGGGGAAAGCCGCGGGCGCGC
TGGGCCACGATGGTTGAGGGGGGGAAGCTGTGATGAACGACGTTTCATAA
CATATCAAGCTCAACAGTCTGACGCCCCTAGTGGGGCCTGGCGAGATCAT
GTCATCTTCTATTTCCTGAGCTCCCCCCCCTTTGCCCCCCCCCCCTCCCT
GCCAACCATGAACGGTGGCCGTCATCCCCGCCCATCCGGGGTCATCGCGC
CAGATCAAGACCTGAACGATATACCCGAAGCCACGGTACTGTCAGGTCCC
CCTACCGGAGGGAATTCCCACGCAAGCACAAGTCATCAATCTACTATCCC
CGCCGCCCAGATGGCGTACACTATTGCACAACCAACGCACCCCCCATCCC
ATCCCACTGCCCCGTCGCCCATGGTCATGTACCCGACACAAGGAGGAGGG
TACCCCCCTCGACAAGGCCCGGTTGTCGTTGACGACAGCGTCATGGCGCA
GTACCTGGCCCAACAGGGGGGGTCTGTCCCCCCCCCTCCTCCGG

Synonyms

Publications