rna9405, rna9405 (mRNA) Nannochloropsis gaditana

Overview
Namerna9405
Unique Namerna9405
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length390
Alignment locationKK037253.1:190067..190401 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100997g2.10768.mrna
Orig protein idgnl|cribi|Naga_100997g2.10768
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:190067..190401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100997g2gene9125Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9405rna9405-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21299.1cds9375Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9405 ID=rna9405|Name=rna9405|organism=Nannochloropsis gaditana|type=mRNA|length=390bp
ATGTCCGACCTGGTGTGCTGTGCCGGGACCTTCTCCTGGTCCCCCTACCA
ACCCAACAACGGTCCCGGCGGCTCCTACGCGATGGCTTGCCCCACCCTGG
GGGCCGGTGACCCCAAGAGCCCCTTCCATGCGGAGCGAGGGGGGAGGGAG
CCGGACGTCGACTACCCGCAGAAAGACCAGCAGGTCCGCATGTCCTCGCC
CTGGCCGGACTGGCCCCTCTCGACCCAAAACGGGAACTACGCGATGCAGT
ACAAAGACAGAAACCCCTCCGTCTATGTCTGGCAATATAACGACGGCGCC
AACTCCCTGTATCTATGCTGCGGGCAGGAAGGGAAAGGGAGCCCCCACTA
CAAGGTGACCTTTTGTCCCGAGGAGGGCGGGGGCAGGTGA
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protein sequence of rna9405

>rna9405-protein ID=rna9405-protein|Name=rna9405|organism=Nannochloropsis gaditana|type=polypeptide|length=81bp
MDSTEALFAKAFPLLHAHDHAFSQGKLKEMLAELVAQDPSLGPLTGFKGF
KRALSLADRARIVAYRVKKEWEVSPDMRTKG
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mRNA from alignment at KK037253.1:190067..190401-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9405 ID=rna9405|Name=rna9405|organism=Nannochloropsis gaditana|type=mRNA|length=335bp|location=Sequence derived from alignment at KK037253.1:190067..190401- (Nannochloropsis gaditana)
ATGGATTCTACGGAAGCCCTCTTTGCGAAAGCCTTTCCCCTTCTCCACGC
GCACGACCACGCCTTCTCCCAGGGAAAGCTCAAAGAGATGCTGGCAGAGC
TCGTCGCCCAAGACCCGTCCCTTGGGGTGCTTCGAGGCGGGGAAACGATG
GCGGCAGAGGCGGGAGTCCCGCTGAATGAGGCGCCACGGGGAGGGATCGC
CCCCGTTAAAACCAGCCGTTGACCGGCTTCAAGGGATTCAAGAGAGCCTT
GAGCCTAGCCGATAGAGCTCGTATTGTAGCATACCGTGTAAAGAAAGAAT
GGGAAGTGTCCCCTGACATGAGAACGAAAGGGTAA
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Coding sequence (CDS) from alignment at KK037253.1:190067..190401-

>rna9405 ID=rna9405|Name=rna9405|organism=Nannochloropsis gaditana|type=CDS|length=492bp|location=Sequence derived from alignment at KK037253.1:190067..190401- (Nannochloropsis gaditana)
CCGTTGACCGGCTTCAAGGGATTCAAGAGAGCCTTGAGCCTAGCCGATAG
AGCTCGTATTGTAGCATACCGTGTAAAGAAAGAATGGGAAGTGTCCCCTG
ACATGAGAACGAAAGGGTAAATGGATTCTACGGAAGCCCTCTTTGCGAAA
GCCTTTCCCCTTCTCCACGCGCACGACCACGCCTTCTCCCAGGGAAAGCT
CAAAGAGATGCTGGCAGAGCTCGTCGCCCAAGACCCGTCCCTTGGGCCGT
TGACCGGCTTCAAGGGATTCAAGAGAGCCTTGAGCCTAGCCGATAGAGCT
CGTATTGTAGCATACCGTGTAAAGAAAGAATGGGAAGTGTCCCCTGACAT
GAGAACGAAAGGGTAAATGGATTCTACGGAAGCCCTCTTTGCGAAAGCCT
TTCCCCTTCTCCACGCGCACGACCACGCCTTCTCCCAGGGAAAGCTCAAA
GAGATGCTGGCAGAGCTCGTCGCCCAAGACCCGTCCCTTGGG
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Synonyms
Publications