rna9404, rna9404 (mRNA) Nannochloropsis gaditana

Overview
Namerna9404
Unique Namerna9404
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length536
Alignment locationKK037253.1:188831..189520 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100997g1.10766.mrna
Orig protein idgnl|cribi|Naga_100997g1.10766
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:188831..189520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100997g1gene9124Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9404rna9404-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21297.1cds9374Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9404 ID=rna9404|Name=rna9404|organism=Nannochloropsis gaditana|type=mRNA|length=536bp
TACCAGAGCCCCGGGGTTGAAGCATGACAGAACCGTGGTTGGGTGCTTAC
CAAAATGTGCCCTTGGACGGCAGCCGGGAGTATCTGACGCCGCACCAACA
CGAGACTTTACACAACTTTCGGCAAGAACAAGGGACAGGGTGGCGCTTTC
ACATTCGTCAACAGTGGGAAAGGCTTTCAGATCGCACCGCCCTCCTCTTC
CAGGGCGAAAACAGCCTTCGGTCCGTCACCTCCCCTTTCCACGCCCTCTT
CCAACACCGACGCTCTCAACTCTACCTCTTCGCCGGCCTTGGCCTTGTGG
CCCTCCTCCTCCTCCTCTCCCTCCTCCTCCCCCGTCCTTCCTCCCCCCCC
CCGGGATACCCGCCCTTGCCCGTCGCCTCCCCCCGCACCTCCATCCCCCC
CAACCTTAAGCCCCTCCCGATCAATCAGGGCGCTGCTTGCCTCGACCTGC
GCCGGCACACGCCCCCCGATGGCCAGAAATTTGTTCAGATCCACAACCGG
TGCAGTGGGGAGGTGATCTACCCCGGGACTGCGTGA
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protein sequence of rna9404

>rna9404-protein ID=rna9404-protein|Name=rna9404|organism=Nannochloropsis gaditana|type=polypeptide|length=129bp
MSDLVCCAGTFSWSPYQPNNGPGGSYAMACPTLGAGDPKSPFHAERGGRE
PDVDYPQKDQQVRMSSPWPDWPLSTQNGNYAMQYKDRNPSVYVWQYNDGA
NSLYLCCGQEGKGSPHYKVTFCPEEGGGR
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mRNA from alignment at KK037253.1:188831..189520+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9404 ID=rna9404|Name=rna9404|organism=Nannochloropsis gaditana|type=mRNA|length=690bp|location=Sequence derived from alignment at KK037253.1:188831..189520+ (Nannochloropsis gaditana)
ATGTCCGACCTGGTGTGCTGTGCCGGGACCTTCTCCTGGTCCCCCTACCA
ACCCAACAACGGTCCCGGCGGCTCCTACGCGATGGCTTGCCCCACCCTGG
GGGCCGGTGACCCCAAGAGCCCCTTCCATgcggagcgaggggggagggag
ccggaCGTCGACTACCCGCAgaaaggtggggagggggatggcgaTGCGCA
CGATCGCGACCTTTTCGATAGGGTGGCATTTCCTTCaacttgccctccct
ccctccctccctccctcgcagaCCAGCAGGTCCGCATGTCCTCGCCCTGG
CCGGACTGGCCCCTCTCGACCCAAAACGGGAACTACGCGATGCAGTACAA
AGACAGAAACCCCTCCGTCTATGTCTGGtagggacggagggggagggggg
ggaggggtctcGTGCGCagaggagaggtgggagTCGCAAAATATTTGGTG
TTTCAAAATGTGCAATTTGAAGTTTGAAAAATGTCGACCGTCACCCCTCG
GTTACGTCCCCCCGCCACGTGGGAGCTGATCGCTTTCGCCGCCCTCAGAC
TCGCCGTTTCCTCTGTCCTTGGCCCCCCCAGGCAATATAACGACGGCGCC
AACTCCCTGTATCTATGCtgcgggcaggaagggaaagggagcccCCACTA
CAAGGTGACCTTTTGtcccgaggagggcgggggcaggtGA
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Coding sequence (CDS) from alignment at KK037253.1:188831..189520+

>rna9404 ID=rna9404|Name=rna9404|organism=Nannochloropsis gaditana|type=CDS|length=1170bp|location=Sequence derived from alignment at KK037253.1:188831..189520+ (Nannochloropsis gaditana)
ATGTCCGACCTGGTGTGCTGTGCCGGGACCTTCTCCTGGTCCCCCTACCA
ACCCAACAACGGTCCCGGCGGCTCCTACGCGATGGCTTGCCCCACCCTGG
GGGCCGGTGACCCCAAGAGCCCCTTCCATgcggagcgaggggggagggag
ccggaCGTCGACTACCCGCAgaaagaCCAGCAGGTCCGCATGTCCTCGCC
CTGGCCGGACTGGCCCCTCTCGACCCAAAACGGGAACTACGCGATGCAGT
ACAAAGACAGAAACCCCTCCGTCTATGTCTGGCAATATAACGACGGCGCC
AACTCCCTGTATCTATGCtgcgggcaggaagggaaagggagcccCCACTA
CAAGGTGACCTTTTGtcccgaggagggcgggggcaggtGAATGTCCGACC
TGGTGTGCTGTGCCGGGACCTTCTCCTGGTCCCCCTACCAACCCAACAAC
GGTCCCGGCGGCTCCTACGCGATGGCTTGCCCCACCCTGGGGGCCGGTGA
CCCCAAGAGCCCCTTCCATgcggagcgaggggggagggagccggaCGTCG
ACTACCCGCAgaaagaCCAGCAGGTCCGCATGTCCTCGCCCTGGCCGGAC
TGGCCCCTCTCGACCCAAAACGGGAACTACGCGATGCAGTACAAAGACAG
AAACCCCTCCGTCTATGTCTGGCAATATAACGACGGCGCCAACTCCCTGT
ATCTATGCtgcgggcaggaagggaaagggagcccCCACTACAAGGTGACC
TTTTGtcccgaggagggcgggggcaggtGAATGTCCGACCTGGTGTGCTG
TGCCGGGACCTTCTCCTGGTCCCCCTACCAACCCAACAACGGTCCCGGCG
GCTCCTACGCGATGGCTTGCCCCACCCTGGGGGCCGGTGACCCCAAGAGC
CCCTTCCATgcggagcgaggggggagggagccggaCGTCGACTACCCGCA
gaaagaCCAGCAGGTCCGCATGTCCTCGCCCTGGCCGGACTGGCCCCTCT
CGACCCAAAACGGGAACTACGCGATGCAGTACAAAGACAGAAACCCCTCC
GTCTATGTCTGGCAATATAACGACGGCGCCAACTCCCTGTATCTATGCtg
cgggcaggaagggaaagggagcccCCACTACAAGGTGACCTTTTGtcccg
aggagggcgggggcaggtGA
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Synonyms
Publications