rna9399, rna9399 (mRNA) Nannochloropsis gaditana

Overview
Namerna9399
Unique Namerna9399
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1318
Alignment locationKK037253.1:178879..179624 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100350g3.4391.mrna
Orig protein idgnl|cribi|Naga_100350g3.4391
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:178879..179624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100350g3gene9119Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9399rna9399-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21305.1cds9369Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9399 ID=rna9399|Name=rna9399|organism=Nannochloropsis gaditana|type=mRNA|length=1318bp
CAGGAACCTTTCCCGCTGCAAGATGTGAAGAAGCTTTTCTTTCACAATGG
CTTTGGTGCTTGAAGCGCATGCCAGTTGGCATCTTTTGGTCTTCCTCGCT
TTCAACAGCAGTGTGTAAAAAGGCGGTAACAGCCCTCAGCTTTCGTTCCT
CTCCTTCCGTACCTTGCGCCTCGTGTTTTTCAGTGCTTGCCTTTCCCACG
GCATTCCGAGCCCCTCGTCTGCAACATTTGTTTTTGCCGACGTTGCTCTT
TACGATACGCTTTTCCGTTCCAACCAACCCGATCTTTCCCCCCAGCTTTC
GTTCCCTTTGCGCCATGTCTCTGCCGCGAATGTCGGAGACGCTGCAGGTG
AAGCGATTGTCCCAGCACGCCGTCCTCCCTGTGCGGGGCTCGGAATGGGC
CGCTGGATACGACCTAGCCAGTGCCGAGGATACTGTGGTCCCCGCTAAGG
GTAAGGCACTCGTGAAGACGGACCTGTCTATCGCCATCCCCCCCAACACT
TACGCGCGCATCGCGCCCCGGTCGGGCCTGGCGTGGAAGAAACACATCGA
TGTGGGCGCCGGGGTGGTGGACTATGACTACCGGGGGCCCGTGGGCGTGG
TCCTCTTCAACCATGGCACGGAGGATTTCGGCGTGAGTCGCGGGGACCGC
GTGGCCCAGCTTATCTTGGAGCGTATCTCCATGGCGGCGGTGGTGGAAGT
GGAGGAGGGGGGGGAGTTGCCGGAGACCAAGAGGGGCCAGGGCGGGTTCG
GGAGCACAGGGGTGCGCCACCAGGGGCAGTTGGCCGAGCGGGAGGAGGGT
GGGAACGGCGAAGGAAAGCGGATGCGGGTTGTGGAGGGAGCCACCTCGGT
GCCGACAGGGGCCCAGCTCCTCCTCATGCTGAAGGAGGTGGCCGACTCGG
GCGAAGACAAGGACTGGATCAAGAGCTTAAAACCTCTCGCGTTGGCGGGA
GATACCCGGATGTATGCCGCCTGGGGGGCCTACCAGTGCAACAAGGACAT
GAGCGACTTGAAGGAGACCCTCCGACTCATCACTCCCTCCGAGCAGTAGG
GCGAAGAACCTTTCGGAGTGGATAGTCCGGAAGCCACAGAGACTGACACT
TGCCAAGCTCGGTAAAGCACGAGGAGGTGAAGCCTACGATTTTTTTTGCC
ATGCCGGAGAAGCCTAGAGTACCTTTGAGAACAGTAGTGGACTGAATTCC
AGAGGTTGGCTTCCCCAGGGTTTCGCCAAGCAGTCGCACCATAACGAGGC
GATGCTGAGCAGACAAGAACATTGAAGTAAGGAACCAAATAAAATTATGG
CTAGTCAGTAGATGTATC
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protein sequence of rna9399

>rna9399-protein ID=rna9399-protein|Name=rna9399|organism=Nannochloropsis gaditana|type=polypeptide|length=109bp
MTLSSSPPASSPPSDTATESELDVLGRDLSGCVLEQYVFTIMGIGLGTGM
SVHRKSFFPLVAWGAAGSIGDLMYGLGYACKGQYDAYKACRNKLHRPQVP
PITPPPSLG
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mRNA from alignment at KK037253.1:178879..179624+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9399 ID=rna9399|Name=rna9399|organism=Nannochloropsis gaditana|type=mRNA|length=746bp|location=Sequence derived from alignment at KK037253.1:178879..179624+ (Nannochloropsis gaditana)
CCATCATTTAtaccctccctgctcgcatTTCAGAGCACACAGGGATCTGC
TAACACGCTTTCAACCAATCCTGTCGTTCGTGCAAAGACTGTGTTGAGCC
ATAtgaccctctcctcctccccgcctgcttcctctccaccatctGATACC
GCCACTGAAAGCGAACTCGACGTCCTCGGTCGCGACCTGTCCGGATGCGT
TCTTGAGCAATACGTGTTTACGATTATGGGGATAGGACTGGGCACGGGCA
TGAGTGTACACAGAAAAAGCTTTTTCCCATTAGTGGCATGGGGGGCCGCA
GGAAGCATTGGAGACTTGATGTATGGCTTGGGGTACGCATGCAAAGGGCA
ATATGACGCATATAAAGCTTGTCGGAACAAATTACATCGACCCCAGGTCC
CACCAAtcactccccctccatcgcttggctgaaatcctccttcttcctcc
gccccccccctcctcctctcccacctcgcTCTTGTTGTTGGAGAGCCTTG
GTCGTCCTTTGCTGTGCAGGGCGTTGTGCATGATGataaaggggaaaaaa
ataccGCCAGGGTGACGAGAGCGAAAACGCTTTCCTAACGCTGAGGGCCA
TGCTCCCCTGTTACCTATCACTTCTTTTTACCTCCCCATGCTCGTATTTC
CTCGTGCATGGGTGAGAGGAGGTCTCGCTCTTTCCTTCACGACGGTATCA
ATTCATTACCATCACTCAGGCAATGACGGCCCCGACGTCAGCGAAG
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Coding sequence (CDS) from alignment at KK037253.1:178879..179624+

>rna9399 ID=rna9399|Name=rna9399|organism=Nannochloropsis gaditana|type=CDS|length=330bp|location=Sequence derived from alignment at KK037253.1:178879..179624+ (Nannochloropsis gaditana)
AtgaccctctcctcctccccgcctgcttcctctccaccatctGATACCGC
CACTGAAAGCGAACTCGACGTCCTCGGTCGCGACCTGTCCGGATGCGTTC
TTGAGCAATACGTGTTTACGATTATGGGGATAGGACTGGGCACGGGCATG
AGTGTACACAGAAAAAGCTTTTTCCCATTAGTGGCATGGGGGGCCGCAGG
AAGCATTGGAGACTTGATGTATGGCTTGGGGTACGCATGCAAAGGGCAAT
ATGACGCATATAAAGCTTGTCGGAACAAATTACATCGACCCCAGGTCCCA
CCAAtcactccccctccatcgcttggctga
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Synonyms
Publications