rna9396, rna9396 (mRNA) Nannochloropsis gaditana

Overview
Namerna9396
Unique Namerna9396
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1696
Alignment locationKK037253.1:164943..166698 +

Link to JBrowse

Properties
Property NameValue
Productmethyltransferase nucleic acid binding protein
Orig transcript idgnl|cribi|Naga_100535g1.6004.mrna
Orig protein idgnl|cribi|Naga_100535g1.6004
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:164943..166698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100535g1gene9116Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9396rna9396-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21307.1cds9366Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9396 ID=rna9396|Name=rna9396|organism=Nannochloropsis gaditana|type=mRNA|length=1696bp
GTTACAGGCACATGGATGGCCCAGGGGGGGGAGGTTAACGGGGATGGCTT
TGCCACGTATGGGTGGGGGACTCAGGACGCTGAGAGGGCCCGAGGGTTCC
CCAAAAAGGCTGTGTGATGGGTAAAATAAGAAATATGAGATGAGATGATT
TCTCGTGGCCGGCATAAAGGATTTTACGTTGGCAACATGGTCTGAAAAAC
GGTTCTCCTTTGGCTTCCGTGCGGCCGGCCCGTTCCCTCCCTTCTAGTCA
CAACAATACGAGTGAATGAATTGACACTCAACATGGCAACATTTCTATCA
AGAAAACAAATTCACGGTAAAGGGATTCCCGTCAAGCCACAGACTCGTCC
CCAAAAAGACAGGTTGGACATTTCAGGTCATGCCCGCGCCAGTTGAACCC
CGCCCCCCCTGTGCTAGCGACACGGACACGGGGCAAAATCGGCAACCACA
AGAGCAACAGCCGCAGTCGTCCCTTCCTGGAACATTTCCGACGCTTTCCG
GGCCCGACGCTACCAGCAACAGCATCCCTGGCGGCGGTAATAGCGAAGGC
TCTTGTCCAGGACCCTCTCCCTCTGTCACGAAGGACGTGGCGGAGACGGC
CTTGAGAGAAGACAGGGGAAATGGTAGCGAAAGGCAGGAACGTGCAACAT
CGATTCTTATAGTTCCCTACCGAGACCTGTATCCCGAGCAGGAACGTGCT
CGGCATCTGCAACGCTTCCTAAGGGAGATGCCAGCCTTGCTTACCGCATT
CGGGGACCCGGCACGGAGGAAGACAGGAGGAGGAGGAGGAGAAGGAGTGG
GAGAACAGAGAGAAGGGGTGCCCGAAGGAAAAGAGAGCGAGGGAAAAGGA
CGCGGCCAAAAAGAGGAGGAAGGGGAAGGAAAGGAAGGTTCAGGGAGCCC
CGGCGCCCCTCTTTACCACATCTACATCGTGGAGCAGAGCAAGGACGGCC
GGAAGTTCAACCGAGGGAAGCTCCTGAACATTGGTTTCGACGTCGCCTTG
AAGGACGGGGAGGGAACGGGGGAGGGGGGGAAGGAGGGAGGGAGGGCGGC
GGCCTCGGTTTTTATTTTCCACGACGTGGACTTGCTCCCCAGCCGGGAGC
TTGTTCCCCTCTACCTTACCCGTCCTTCCCGCCCCCTCCACATCGCCCGG
GCCTGGGGCCGCTACAGCGGGAACCCTCGTTACTTGGGGGGGGCAATCGC
ATTCAACGCCACGGATTTTCAAAAAATCAACGGTTTCCCCAATACGTTTT
GGGGGTGGGGGGGCGAGGACGATGAGATGAGGAAGCGGGTGGAGCAGGTT
GGGTTGGAAGTAGGTGCGCCGGCGGCGGAGGAGGGAGGGCGCATGGAGGA
CATGGAGGGCGTGAGTCTGGAGGAAAAATTGCAGGCTTTGCGGCGGAACC
GGGAGTGGAAGTGTAATGTGAAGTGGGAGGCTCTGGGAGAGCACGCTGAG
ACGTGGAGGCAGAACGGCCTGAAGGACTTGCGGTACGAAGTGATGGGGCG
GGAAGAGCTGGAGGGGGAGGTGGGGGGCGGGGGGGGGCGGATCACGAAGC
TGACGGTGGACGTGAGGGAGAACGGGCACTGGACCGACACGGTGGTGGAG
ATCGAGGGCCCCGCTGGAGGGGGCGGCAAGGGGGGGAAGAGGGGGCGGGA
GGGCGAGAGGAAGGGGCCAGGCGGCCGAGGTCGTTGGCGGAGGTGA
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protein sequence of rna9396

>rna9396-protein ID=rna9396-protein|Name=rna9396|organism=Nannochloropsis gaditana|type=polypeptide|length=437bp
MPRYLVTFVYRLLDFRFAELDAILDMLCLDPAAVYAPSPPEIRLNNYSHL
FVDLPSEAVAVEIQQRAVLVESVLELWGEGRTYEELDASLLSLSDDVLAP
YMRPKMTWSLMVAGSGKTLSMAAQDTARYRVLASIPFPGPIQLKQPQETF
WLIDHVANDTDPTPDHLYFGRAITSRASRGRERVGKGDLKRRAYLGPTSL
DNELALLMASFAQIRPGSMVLDPFVGTGSILVACTQFGAFCVGTDIDIRV
LRGKEEGRNVYANFTQYGLRYPELVRSDNALYAGHFRQVALYDAIVCDPP
YGIRAGARRSGSRREQVRPVPAHLRADHIPQTRPYPMRDVLDDLLQVAST
ALRAGGRLVYLLPCEVGPEAGPEEGVVPTHEALDLVCVHEQKLNSKLVRK
MVVMQKGEGTGDRGREGEEGGREGEGPRVKRQHIVRE
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mRNA from alignment at KK037253.1:164943..166698+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9396 ID=rna9396|Name=rna9396|organism=Nannochloropsis gaditana|type=mRNA|length=1756bp|location=Sequence derived from alignment at KK037253.1:164943..166698+ (Nannochloropsis gaditana)
ATCATCTCATCTCATATTTCTTATTTTACCCATCACACAGCCTTTTTGGG
GAACCCTCGGGCCCTCTCAGCGTCCTGAGTCCCCCACCCATACGTGGCAA
AGCCATCCccgttaacctcccccccctgggcCATCCATGTGCCTGTAACG
CTTGCACGAACACGCCGAGCACACGGCATTCGCAGCGTTTGCCTCGATTC
TTGGCTATCGGCTCCTGTATTTTCTGTTACTGCTTAACGAAAAAGGGCCC
AGTTGCTTGCACTCGGTCGCCACGGAGCTCCCACCCGAGGCCTCCGTCCT
ACGACCCCCACGTCGGGCCTCCCGTGCAAGCACGCGTGGCATACGGGCAG
ACTCAAGAAGCATTTCGTACACTCATATTGACAAGATTGAAGGATGCCTC
GGTATCTAGTCACTTTCGTGTATCGTCTGCTCGATTTTCGATTTGCGGAG
TTGGATGCCATCCTCGATATGCTCTGCCTGGACCCCGCCGCTGTGtacgc
tccttcccccccggaaATCAGGCTCAACAATTACTCACACCTATTCGTTG
ACCTCCCTTCTGAGGCCGTAGCTGTAGAGATCCAACAGCGGGCCGTTCTG
GTCGAGAGCGTCCTGGAGCTCTGGGGTGAGGGCCGTACCTATGAAGAGTT
GGACGCCAGCCTGCTGTCCCTCTCCGACGATGTCCTCGCCCCTTACATGC
GGCCGAAGATGACCTGGTCGTTGATGGTGGCGGGCTCGGGCAAAACCCTG
AGCATGGCTGCCCAAGACACTGCCCGCTACCGTGTCctggcctccatccc
tttcccggGGCCCATTCAGTTGAAGCAGCCGCAAGAGACTTTCTGGCTGA
TCGACCACGTCGCCAACGACACCGACCCGACGCCCGACCACCTCTACTTC
GGTCGcgccatcacctcccggGCTTCCCGTGGCCGGGAGCGTGTCGGGAA
AGGGGACTTGAAGCGGCGGGCTTATCTGGGACCGACCTCTCTGGACAACG
AACTCGCCCTGCTCATGGCGAGCTTCGCGCAAATCCGACCCGGAAGTATG
GTGTTGGACCCTTTTGTGGGCACGGGCTCTATTCTGGTGGCCTGCACCCA
GTTTGGGGCCTTTTGTGTGGGCACCGACATCGACATCCGGGTCttgcggg
ggaaggaggagggacgcaaCGTCTATGCGAATTTCACCCAGTACGGGCTA
CGCTACCCGGAGCTGGTTCGGAGCGATAACGCGCTGTATGCCGGGCACTT
CCGCCAGGTGGCTCTGTACGACGCCATTGTCTGCGACCCCCCCTACGGGA
TCCGGGCGGGGGCTCGGCGTTCCGGCAGCCGTCGGGAGCAAGTGCGGCCT
GTGCCAGCCCATCTCCGAGCCGACCACATCCCCCAAACCAGGCCCTACCC
GATGCGCGACGTGCTTgacgacctcctccaagtgGCGTCGACCGCcctga
gggcgggagggaggttggtcTACCTGCTTCCCTGCGAGGTAGGGCCCGAG
GCCGGGcctgaggaaggggtggttcCTACGCACGAAGCGCTGGACTTGGT
GTGCGTGCATGAGCAGAAGCTGAACAGCAAGCTGGTCCGGAAGATGGTGG
TGATgcaaaagggggaggggacgggggatagagggagggagggggaggag
ggagggagggagggggagggcccgcGGGTGAAGAGACAGCATATAGTGAG
AGAGTAAGCAGCGCCTGCCCCTGACGGGGAAAGAAGTATGCCTGGATTCT
TGTGCA
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Coding sequence (CDS) from alignment at KK037253.1:164943..166698+

>rna9396 ID=rna9396|Name=rna9396|organism=Nannochloropsis gaditana|type=CDS|length=1314bp|location=Sequence derived from alignment at KK037253.1:164943..166698+ (Nannochloropsis gaditana)
ATGCCTCGGTATCTAGTCACTTTCGTGTATCGTCTGCTCGATTTTCGATT
TGCGGAGTTGGATGCCATCCTCGATATGCTCTGCCTGGACCCCGCCGCTG
TGtacgctccttcccccccggaaATCAGGCTCAACAATTACTCACACCTA
TTCGTTGACCTCCCTTCTGAGGCCGTAGCTGTAGAGATCCAACAGCGGGC
CGTTCTGGTCGAGAGCGTCCTGGAGCTCTGGGGTGAGGGCCGTACCTATG
AAGAGTTGGACGCCAGCCTGCTGTCCCTCTCCGACGATGTCCTCGCCCCT
TACATGCGGCCGAAGATGACCTGGTCGTTGATGGTGGCGGGCTCGGGCAA
AACCCTGAGCATGGCTGCCCAAGACACTGCCCGCTACCGTGTCctggcct
ccatccctttcccggGGCCCATTCAGTTGAAGCAGCCGCAAGAGACTTTC
TGGCTGATCGACCACGTCGCCAACGACACCGACCCGACGCCCGACCACCT
CTACTTCGGTCGcgccatcacctcccggGCTTCCCGTGGCCGGGAGCGTG
TCGGGAAAGGGGACTTGAAGCGGCGGGCTTATCTGGGACCGACCTCTCTG
GACAACGAACTCGCCCTGCTCATGGCGAGCTTCGCGCAAATCCGACCCGG
AAGTATGGTGTTGGACCCTTTTGTGGGCACGGGCTCTATTCTGGTGGCCT
GCACCCAGTTTGGGGCCTTTTGTGTGGGCACCGACATCGACATCCGGGTC
ttgcgggggaaggaggagggacgcaaCGTCTATGCGAATTTCACCCAGTA
CGGGCTACGCTACCCGGAGCTGGTTCGGAGCGATAACGCGCTGTATGCCG
GGCACTTCCGCCAGGTGGCTCTGTACGACGCCATTGTCTGCGACCCCCCC
TACGGGATCCGGGCGGGGGCTCGGCGTTCCGGCAGCCGTCGGGAGCAAGT
GCGGCCTGTGCCAGCCCATCTCCGAGCCGACCACATCCCCCAAACCAGGC
CCTACCCGATGCGCGACGTGCTTgacgacctcctccaagtgGCGTCGACC
GCcctgagggcgggagggaggttggtcTACCTGCTTCCCTGCGAGGTAGG
GCCCGAGGCCGGGcctgaggaaggggtggttcCTACGCACGAAGCGCTGG
ACTTGGTGTGCGTGCATGAGCAGAAGCTGAACAGCAAGCTGGTCCGGAAG
ATGGTGGTGATgcaaaagggggaggggacgggggatagagggagggaggg
ggaggagggagggagggagggggagggcccgcGGGTGAAGAGACAGCATA
TAGTGAGAGAGTAA
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Synonyms
Publications