rna9389, rna9389 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9389
Unique Name	rna9389
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2230
Alignment location	KK037253.1:133788..135905 +

Link to JBrowse

Properties


Property Name	Value
Product	aldehyde dehydrogenase family
Orig transcript id	gnl\|cribi\|Naga_100233g6.3730.mrna
Orig protein id	gnl\|cribi\|Naga_100233g6.3730
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:133788..135905 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100233g6	gene9108	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9389	rna9389-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21315.1	cds9359	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:133788..135905+
coding sequence from alignment at KK037253.1:133788..135905+

mRNA sequence

>rna9389 ID=rna9389|Name=rna9389|organism=Nannochloropsis gaditana|type=mRNA|length=2230bp
AGACACTATAATCCCGTATTGCATCTCTGCTTCTTTGGCCCGTGGCTGAA
AAGGGGCCTGTCTAACAACCTTTTGGCCCTCATAAACCCTCACACAGGTC
TGTCGTGGTGTTATCGGTATCTCTAGGGCTCCGGACCAGAGCTTGAGATT
CATGCCTCGGCGGGGGTTGCGCAGCGAGAGCGGGGACGGGAGGCGCGAGC
AGGTCGACGGCCTGGAGGAAGAAAGCCATCGGCGCATCAGGTCGCACAGC
AGAATTGCCGGCGCCAGTCGCGGCGTACGAAGGAAAGCCAACCGGCAGCT
TTCTGAAGAAGTGTCGGCTAGCGAAGCCCTGCCCGGGTGGTCCCTGCCCC
CCCCCTCCTGCCTGCACCGTTCTGCGCGCTGGCACCTCCTCGGGCCGACC
TCGAGGTCGGCCAAGAAGCCAAAGCGAGGGCCTGGTGCCTGGCGGCACAC
CTCAGGAAGCCAGGGATCTGGGTTGGCCTACTCGCCCTCTTCTTCCTCCT
CGGGCGCTCTTGGGATTCAGGTGTCAAGCCGACCTGGGCTCGCGCTTGAA
GGGCGTGAAGAGGAAGGAACTGGCAACGACGCGGCGAGAGGGGCCGCCAG
CAGGACGAGATTTGCCTTTGCGGGGGACGGGGAGGAGGAGGAGGAGGGAG
AGCAGGAGGAGGACAGCGGAGGAGGAGGGGGAGGGGAGCGAGGTGGGGAC
GGGATTTGCGACGCGCAGGCGGTGAGCATCAACAGCGGCTGCCTGGGCGG
TTTTCCCATCGGGGTGGGCTGTGCCGTGTCGGGGGAAGGGGGCCTAGCCT
TCGCGGTCCAGAGCGAGGCCACCTCTCCGGGCACGGGCGAGCTGATCTTG
ACGGGCAAGATCGGGAAGTCGATGGCCGAGAGCTGCATGGTGGCGCTGAG
CTGGGTGAAGGCGAAGAAGCGAGATTTGTGCCTGTGGATGAGCCTGGAGG
GGGAGGATGGGGAAGGGAGCGGGTGTCTGGTCGACCTGCACCGCCCGGAC
CTGGACGTGCACGTGAACTTTCCTTCCTGCGAGGCGGAGAAGAATGGGCC
GTCCGCGGGCGCCACGGTCGCGACCAGCCTGGTTTTGATGATGACGGGTG
CGCAGCTCTTGCCCAACATCGCCATCTCGGGGGAGATCAATCTGAAGGGA
GACCTGCTCCCCATCGGGAACGTGAAGGAAAAAGTGGCGGCGGCGGCCCG
GCAGGGCATCACGCACATTGTCCTCTCCTCCGCCAACGTCAAGCAGTTCC
GGCGCCTGCCCGCCAGGATCCGCAACGCGGTCAAGGCGCTCAAGGCCAAC
CACATCGTGGAGGTCCTCAAGCACGCGGTGTTGCCCCCCGGGGGGAGAGG
CTACCAGGCCCGGTACGAGCACCGGCTGCGGGAGGTGGCGGGCCTCGGGC
TGGCCGCCTCGCTGGCCTGCTCCCACGTGAAGGGACGGGTCCAGTGGGTG
GAGTGCTGCGCCACCACGGGCCGGGGTGAGTGGCACATCACGGGGAATGT
TCTCGAAGGAACGCGGGGCTCGGTCCTGGTCGCCCGTACCTGGGTGCGTC
GGAACGCCGCCGCCATCGTCGCGCGCTTGGGGGGGAAGACGAGCGTGCAG
GTGGAGCTGTGCGCCCTCCACGGGCTGGGGCCGGCCTGGCGGCTGCGTGG
CAAAGAAACCGGGGCGGTGGGCCCAGCACTGGCCGCGGGAACTCCTTCCC
TGCCCCTCGAGCCCAGCCGACGCAGCAACGGGAAGCACCCGCTCTCCCCC
TCCCCCGGCACCCTGGCCTCAGGGGACCCCGCCCTCCTTCCCCCCCCGCA
ACTTGACCTACACATCCACATGCCCGGCACCGACGTGGCCAAGGACGTCT
CCATTAACGGCGCGGCGGCGGCTGTCAGCATGATCGCCGTCATGACGGGC
CTGGCTGTGCGCCCCGGTAAGCCCCGGGATCTCTACCTTCCTCCCCTCCC
GCGTGATCGACTCGTTTCACCGTCCCTCCCCGCCCTCCCTCCTTCCCTCT
CTAGACGTTGCCGTTCTGGGCGAAATCACCCTGTCGGGCGTGTTCTGGCC
CTTGGAGCAGGTGAACGAGGCGGAGGTCAACACGGCCATCGACGCGAACA
TCTCGCTGCTTGTCCTGCCCATGGTAAGGCGCGAAGGGAGGGAGGAGGCG
AAAAGAGGGTGGAGAAATGGGGAGGACAGACTTCTCCGGAGGAGATGGGG
GGGGGGGGATTTAGTGAGGGGAGAAGATGA

protein sequence of rna9389

>rna9389-protein ID=rna9389-protein|Name=rna9389|organism=Nannochloropsis gaditana|type=polypeptide|length=563bp
MNSIVSYISKYLPGQTHRSLSHCRLKPFRRHFYPSCNPRSKHHGLWINDQ
SRPALKGLTHTLQNPATRKDLGHVVSIAEAQDIDVAVEAAESSFHSGVWS
RETDVKGRSKVLLNMAHGLEKRLPELSRLESLQTGRPLREMRAQLSRLPE
WFEYFAALVRTEEGSLPPFPGPYLNYVRRVPLGVCALLTPWNHPLLIAVK
KLAPALAGGNSVVLKPPELAPLAVLALGEIARDAGLPPGVLNIVPGQGKV
AGRALAAHPRVRKVDLTGGTDTGRMTACVAGKNLAKVVAELGGKTPMLVF
PDVDVDEAVNMCAFGAFVAAGQTCVSGSRLLVHESIFDDFAARFAAKAQG
LRLGDPLHLETDVGPLISRAQLERVHGFVERAKTKGAKVLCGGLGSIASS
PSSSPTTPTPTPVRGASPLQSLPRHLASGFFYPPTALTSVHPDMEIMQEE
VFGPVVCLLPFASESEAVALANRSPYGLGASVHTKCGRRAHRVADSLQAG
VIWLNEHHRNAPASPWGGVTAASGLGRENGREAWMDYTQSKSVVVGYAEG
AFDWFSQRGARYG

mRNA from alignment at KK037253.1:133788..135905+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9389 ID=rna9389|Name=rna9389|organism=Nannochloropsis gaditana|type=mRNA|length=2118bp|location=Sequence derived from alignment at KK037253.1:133788..135905+ (Nannochloropsis gaditana)
CACTGACAGACGAGCCGGGGAACGGGCGTTTTGGCTCCATTTTCTCCATG
TGCTGAAGCGCGCCTCTCACTGCACGCTATCCGCGCTACCATAAtacctc
ccctacccccccaACATGAACTCCATCGTCTCCTACATTTCCAAGTATCT
ACCTGGGCAGACGCACCGATCCTTGTCACATTGTCGTCTAAAACCTTTCA
GACGCCATTTTTATCCGTCTTGTAACCCTAGATCCAAGCACCACGGGCTC
TGGATTAACGACCAAAGTCGCCCGGCCTTAAAAGGTTTGACGCACACGCT
ACAAAATCCAGCCACACGCAAAGACCTCGGTCATGTTGTGAGCATTGCGG
AAGGTGCGCTAATTTTGATCTTCATAACCTGACTGATTTGGAGTTCGAGG
GGCGCACCTGTAGTTTATTGAAGCCTTCCACGTTTTTATTTCGCTCTTCG
TCGATTTCTTATTTTAGCCCAGGATATTGATGTAGCTGTCGAGGCTGCCG
AGTCAAGTTTCCATTCTGGCGTATGGTCAAGAGAGACAGACGTTAAAGGG
CGGAGCAAGGTGCTGTTGAACATGGCTCACGGACTGGAAAAACGCCTCCC
GGAGTTGAGCCGCCTCGAGTCCTTGCAGACCGGCCGCCCGCTACGAGAAA
TGCGGGCCCAGCTCTCCCGTCTGCCCGAATGGTTCGAATATTTCGCAGCC
CTGGTCCGCACAGAAGAAGGGAGCCTGCCTCCGTTCCCCGGACCGTACTT
GAACTATGTCCGACGGGTCCCACTCGGGGTATGCGCGCTTTTGACTCCCT
GGAATCACCCCCTCCTAATTGCTGTTAAAAAACTCGCCCCTGCACTGGCC
GGGGGCAACAGCGTGGTCTTGAAACCCCCCGAACTGGCCCCCTTGGCCGT
TTTGGCCCTCGGAGAAATTGCCCGGGACGCGGGGCTACCTCCGGGTGTCC
TAAACATCGTGCCTGGGCAGGGCAAGGTGGCGGGGAGAGCCTTAGCCGCA
CACCCCAGAGTGCGCAAGGTAGACCtgacgggcgggacggatACGGGTCG
GATGACGGCCTGTGTGGCGGGAAAAAACCTggccaaggtggtggcggagc
tgGGCGGGAAGACCCCAATGCTCGTGTTCCCGGACGTGgatgtggacgag
gcggtgAACATGTGTGCGTTCGGGGCCTTCGTGGCAGCGGGCCAGACATG
CGTCTCTGgcagccgcctcctcgtgcaCGAGTCCATCTTCGACGACTTCG
CCGCCCGCTTTGCGGCCAAGGCCCAGGGCCTGCGCCTCGGCGACCCCCTA
CACCTGGAAACGGACGTGGGACCGCTCATCTCCCGAGCGCAATTGGAGCG
CGTGCACGGCTTCGTAGAACGCGCCAAGACAAAGGGAGCCAAGGTATTGT
GCGGAGGGCTGGGCTcaatcgcttcctccccgtcgtcctcccccacgacc
cccacccccacccccgtccGGGGCGCCTCGCCGCTTCAATCTCTCCCTCG
GCACCTGGCCTCCGGATTCTTCTACCCGCCCACCGCGCTCACCAGCGTCC
ATCCTGACATGGAAATcatgcaggaggaggtgttcgGCCCCGtcgtctgc
ctcctccccttcgcctccgagtcggaggccgtggccctgGCCAATCGCTC
TCCTTACGGGCTCGGGGCCAGCGTGCACACGAAATGCGGACGTCGCGCGC
ACCGGGTGGCGGACAGCTTGCAGGCAGGAGTAATCTGGCTGAACGAGCAC
CATCGAAACGCGCCCGCGTCCCCCTGGGGCGGGGTGACGGCAGCAAGCGG
GCTGGGGCGAGAGAACGGGCGGGAGGCCTGGATGGACTACACACAGAGCA
AGAGCGTGGTGGTGGGGTACGCCGAGGGGGCCTTCGACTGGTTCTCGCAG
CGAGGGGCGCGGTATGGTTGAACGAGCGCGGGGACAAGGTAgcgaggggg
tggtgggcaGGTCAtggggtgaggaagaagacgggatTGTGTCAATAGAG
AGAAGTCTGATGGCCCGCAGGCTCCCTGTGAACGAGGCGAGACACAAGGC
GCTTCAAAGCGGGGAAATGAAGAataagggaggggacgggggaagaaaga
aggcacAGACAAGACCCA

Coding sequence (CDS) from alignment at KK037253.1:133788..135905+

>rna9389 ID=rna9389|Name=rna9389|organism=Nannochloropsis gaditana|type=CDS|length=3384bp|location=Sequence derived from alignment at KK037253.1:133788..135905+ (Nannochloropsis gaditana)
ATGAACTCCATCGTCTCCTACATTTCCAAGTATCTACCTGGGCAGACGCA
CCGATCCTTGTCACATTGTCGTCTAAAACCTTTCAGACGCCATTTTTATC
CGTCTTGTAACCCTAGATCCAAGCACCACGGGCTCTGGATTAACGACCAA
AGTCGCCCGGCCTTAAAAGGTTTGACGCACACGCTACAAAATCCAGCCAC
ACGCAAAGACCTCGGTCATGTTGTGAGCATTGCGGAAGCCCAGGATATTG
ATGTAGCTGTCGAGGCTGCCGAGTCAAGTTTCCATTCTGGCGTATGGTCA
AGAGAGACAGACGTTAAAGGGCGGAGCAAGGTGCTGTTGAACATGGCTCA
CGGACTGGAAAAACGCCTCCCGGAGTTGAGCCGCCTCGAGTCCTTGCAGA
CCGGCCGCCCGCTACGAGAAATGCGGGCCCAGCTCTCCCGTCTGCCCGAA
TGGTTCGAATATTTCGCAGCCCTGGTCCGCACAGAAGAAGGGAGCCTGCC
TCCGTTCCCCGGACCGTACTTGAACTATGTCCGACGGGTCCCACTCGGGG
TATGCGCGCTTTTGACTCCCTGGAATCACCCCCTCCTAATTGCTGTTAAA
AAACTCGCCCCTGCACTGGCCGGGGGCAACAGCGTGGTCTTGAAACCCCC
CGAACTGGCCCCCTTGGCCGTTTTGGCCCTCGGAGAAATTGCCCGGGACG
CGGGGCTACCTCCGGGTGTCCTAAACATCGTGCCTGGGCAGGGCAAGGTG
GCGGGGAGAGCCTTAGCCGCACACCCCAGAGTGCGCAAGGTAGACCtgac
gggcgggacggatACGGGTCGGATGACGGCCTGTGTGGCGGGAAAAAACC
TggccaaggtggtggcggagctgGGCGGGAAGACCCCAATGCTCGTGTTC
CCGGACGTGgatgtggacgaggcggtgAACATGTGTGCGTTCGGGGCCTT
CGTGGCAGCGGGCCAGACATGCGTCTCTGgcagccgcctcctcgtgcaCG
AGTCCATCTTCGACGACTTCGCCGCCCGCTTTGCGGCCAAGGCCCAGGGC
CTGCGCCTCGGCGACCCCCTACACCTGGAAACGGACGTGGGACCGCTCAT
CTCCCGAGCGCAATTGGAGCGCGTGCACGGCTTCGTAGAACGCGCCAAGA
CAAAGGGAGCCAAGGTATTGTGCGGAGGGCTGGGCTcaatcgcttcctcc
ccgtcgtcctcccccacgacccccacccccacccccgtccGGGGCGCCTC
GCCGCTTCAATCTCTCCCTCGGCACCTGGCCTCCGGATTCTTCTACCCGC
CCACCGCGCTCACCAGCGTCCATCCTGACATGGAAATcatgcaggaggag
gtgttcgGCCCCGtcgtctgcctcctccccttcgcctccgagtcggaggc
cgtggccctgGCCAATCGCTCTCCTTACGGGCTCGGGGCCAGCGTGCACA
CGAAATGCGGACGTCGCGCGCACCGGGTGGCGGACAGCTTGCAGGCAGGA
GTAATCTGGCTGAACGAGCACCATCGAAACGCGCCCGCGTCCCCCTGGGG
CGGGGTGACGGCAGCAAGCGGGCTGGGGCGAGAGAACGGGCGGGAGGCCT
GGATGGACTACACACAGAGCAAGAGCGTGGTGGTGGGGTACGCCGAGGGG
GCCTTCGACTGGTTCTCGCAGCGAGGGGCGCGGTATGGTTGAATGAACTC
CATCGTCTCCTACATTTCCAAGTATCTACCTGGGCAGACGCACCGATCCT
TGTCACATTGTCGTCTAAAACCTTTCAGACGCCATTTTTATCCGTCTTGT
AACCCTAGATCCAAGCACCACGGGCTCTGGATTAACGACCAAAGTCGCCC
GGCCTTAAAAGGTTTGACGCACACGCTACAAAATCCAGCCACACGCAAAG
ACCTCGGTCATGTTGTGAGCATTGCGGAAGCCCAGGATATTGATGTAGCT
GTCGAGGCTGCCGAGTCAAGTTTCCATTCTGGCGTATGGTCAAGAGAGAC
AGACGTTAAAGGGCGGAGCAAGGTGCTGTTGAACATGGCTCACGGACTGG
AAAAACGCCTCCCGGAGTTGAGCCGCCTCGAGTCCTTGCAGACCGGCCGC
CCGCTACGAGAAATGCGGGCCCAGCTCTCCCGTCTGCCCGAATGGTTCGA
ATATTTCGCAGCCCTGGTCCGCACAGAAGAAGGGAGCCTGCCTCCGTTCC
CCGGACCGTACTTGAACTATGTCCGACGGGTCCCACTCGGGGTATGCGCG
CTTTTGACTCCCTGGAATCACCCCCTCCTAATTGCTGTTAAAAAACTCGC
CCCTGCACTGGCCGGGGGCAACAGCGTGGTCTTGAAACCCCCCGAACTGG
CCCCCTTGGCCGTTTTGGCCCTCGGAGAAATTGCCCGGGACGCGGGGCTA
CCTCCGGGTGTCCTAAACATCGTGCCTGGGCAGGGCAAGGTGGCGGGGAG
AGCCTTAGCCGCACACCCCAGAGTGCGCAAGGTAGACCtgacgggcggga
cggatACGGGTCGGATGACGGCCTGTGTGGCGGGAAAAAACCTggccaag
gtggtggcggagctgGGCGGGAAGACCCCAATGCTCGTGTTCCCGGACGT
GgatgtggacgaggcggtgAACATGTGTGCGTTCGGGGCCTTCGTGGCAG
CGGGCCAGACATGCGTCTCTGgcagccgcctcctcgtgcaCGAGTCCATC
TTCGACGACTTCGCCGCCCGCTTTGCGGCCAAGGCCCAGGGCCTGCGCCT
CGGCGACCCCCTACACCTGGAAACGGACGTGGGACCGCTCATCTCCCGAG
CGCAATTGGAGCGCGTGCACGGCTTCGTAGAACGCGCCAAGACAAAGGGA
GCCAAGGTATTGTGCGGAGGGCTGGGCTcaatcgcttcctccccgtcgtc
ctcccccacgacccccacccccacccccgtccGGGGCGCCTCGCCGCTTC
AATCTCTCCCTCGGCACCTGGCCTCCGGATTCTTCTACCCGCCCACCGCG
CTCACCAGCGTCCATCCTGACATGGAAATcatgcaggaggaggtgttcgG
CCCCGtcgtctgcctcctccccttcgcctccgagtcggaggccgtggccc
tgGCCAATCGCTCTCCTTACGGGCTCGGGGCCAGCGTGCACACGAAATGC
GGACGTCGCGCGCACCGGGTGGCGGACAGCTTGCAGGCAGGAGTAATCTG
GCTGAACGAGCACCATCGAAACGCGCCCGCGTCCCCCTGGGGCGGGGTGA
CGGCAGCAAGCGGGCTGGGGCGAGAGAACGGGCGGGAGGCCTGGATGGAC
TACACACAGAGCAAGAGCGTGGTGGTGGGGTACGCCGAGGGGGCCTTCGA
CTGGTTCTCGCAGCGAGGGGCGCGGTATGGTTGA

Synonyms

Publications