rna9387, rna9387 (mRNA) Nannochloropsis gaditana

Overview
Namerna9387
Unique Namerna9387
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length342
Alignment locationKK037253.1:127301..129741 +

Link to JBrowse

Properties
Property NameValue
Producttranscription factor dp-1
Orig transcript idgnl|cribi|Naga_100214g2.6240.mrna
Orig protein idgnl|cribi|Naga_100214g2.6240
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:127301..129741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100214g2gene9105Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9387rna9387-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21325.1cds9357Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9387 ID=rna9387|Name=rna9387|organism=Nannochloropsis gaditana|type=mRNA|length=342bp
ATGTACCAAAGGTACGAGACTCGCACCGGGCTGGTCCTCCTCTTCCTTCT
TCGTGAGCTGAACATTTCATGTGAGGGAGACTTAACACGCCATTCTCTCG
AGATTTCCCCGTGCCAAGCCGCGCGCCTGGGGCATGATGGCATGAATTTT
GACTTCTTCTTGCTCGCAGCAACCGAAAGTAACCACGTGCAACCAAATGC
TTTTCTACATGTGTTTCGAGGGCTGGGCGCGTGGTGTTCAGGTTTATCAC
ATTTCCCCAGAGACAGCAAGGATATGCAGGGCGCGTTCTCGCTTGACCCG
CATTGTACGAGGCATCAAGGACATATTTATTCGTGTGGCTGA
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protein sequence of rna9387

>rna9387-protein ID=rna9387-protein|Name=rna9387|organism=Nannochloropsis gaditana|type=polypeptide|length=497bp
MPKLTKREQERALAQAVAADNNGDGASSPPSAAPTASQSHFTGRSLHLPA
ASHLSAQVTGASSPFDNQFSTEEIASLMADTASFDVNAGGETSTPVLPTS
RAGAGGRRLGWPGPGEDAGNGVEDAKKSTVPLIMDGMGYVGNGGAEAGGF
KRKAEEAFGGRGGGGGEREGDPGANAWEELSQHPRSQAPVVNGRVRKTPV
RPTVGGSKCGAGAATPGSADKSSKGLRHFSLQVCRKVEEKGRTNYNEVAD
ELVAEVLAQRAEPSGTGPVEKYDEKNIRRRVYDALNVLMAMDIISKEKKE
IRWKGLPSNAQHDLEVLRRDKRRLESSLAKKRELLQELILQRIAFQRLMR
RNSEREEMMATTTSSAAAAAAAAEAAAAAANASAGTGSSARSSPSSSTAT
ARAAAAAATAAVQAAEDEEQRRVPLPFIIVNTHSQTLIHCEMAEDRSDVF
FNFSAPFELADDNEILRRMQLQRASVEDVEAFVPEHLKAYVSDSVYE
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mRNA from alignment at KK037253.1:127301..129741+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9387 ID=rna9387|Name=rna9387|organism=Nannochloropsis gaditana|type=mRNA|length=2441bp|location=Sequence derived from alignment at KK037253.1:127301..129741+ (Nannochloropsis gaditana)
GCAGGCTCGGTATATTACGATATAGGCTCCCTGAGATAGGCTCCCACTGT
CATCTGGCACGTTCACTTAAGTACTTTTCCTGTCTCCTAAATCCTCACAA
GCGCAGCATTGCCTCAGCTTCTTCCCTTGGACCGGCTTTGTTCCTACCAG
CGAGGCAGAGTAGTTGGCTCGacgcttcctctctcagAAAAATGCCTAAG
TTAACGAAGCGAGAGCAAGAGAGGGCCCTGGCACAGGCCGTTGCCGCTGA
TAACAATGGAGATGGAGcttcctctccgccatcCGCGgctcccactgcct
cccaGTCTCATTTCACGGGCAGATCCCTGCACCTCCCTGCGGCCTCGCAC
CTCTCAGCCCAGGTCACGGGGGCTTCTTCGCCCTTCGACAACCAGTTTTC
GACGGAAGAAATTGCCAGCTTGATGGCTGACACGGCTTCCTTCGATGTGA
ACGCGGGAGGCGAAACCTCCACCCCTgtccttcctacctccagggcaggg
gcaggaggaaggaggttgggaTGGCCGGGTCCGGGGGAGGATGCCGGAAA
CGGGGTGGAAGATGCGAAGAAATCTACGGTGCCTTTGATCATGGACGGTA
TGGGATACGTCGGCAATGGAGGAGCTGAGGCGGGAGGGttcaagaggaag
gcagaggaggcgtttggtggaagaggaggaggaggaggagaaagggaggg
cgacccAGGGGCAAATGCGTGGGAGGAACTGAGCCAGCATCCCAGATCTC
AAGCTCCTGTCGTCAACGGTCGCGTGCGTAAGACACCAGTCCGCCCCACG
GTGGGCGGCAGCAAATGCGGCGCGGGGGCCGCTACCCCCGGCTCAGCGGA
TAAGTCTTCCAAGGGCTTGCGGCACTTCAGTCTTCAGGTGTGtcggaagg
tggaggagaaaggccgcACCAACTACAATGAGGTGGCGGATGAATTGGTG
GCAGAGGTGCTGGCGCAACGCGCCGAGCCCTCGGGGACGGGTCCGGTGGA
GAAATACGACGAGAAAAATATCCGGCGCCGAGTCTACGACGCTCTGAACG
TGCTCATGGCCATGGACATCAtcagcaaggagaagaaggagatccGATGG
AAAGGCTTGCCGTCCAATGCCCAGCATGACCTGGAGGTCCTGCGCCGGGA
CAAGCGCCGGCTGGAGAGCAGCCTTGCCAAGAAGCGGGAGCTCCTGCAGG
AGCTCATTCTCCAGCGCATCGCTTTTCAACGCTTGATGCGTCGGAACAGc
gaaagggaagaaatgatggccacgaccacgtcaagtgcagcggcagcagc
agcggcggcggaggcggctgccgccgctgccaacGCCTCGGCCGGGACGG
GCTCCTCAGCCaggtcctctccctcttcttccacagCGACCGCGcgtgct
gctgcggccgccgccactgccgccgTCCAAGCAgctgaagacgaggagca
aCGGCGTGTGCCCTTACCCTTCATCATTGTAAACACGCACTCCCAGACCC
TGATCCATTGCGAGATGGCTGAAGACCGGTCCGACGTGTTTTTTAATTTC
TCCGCCCCCTTCGAGTTGGCAGACGACAACGAGATATTGAGGCGGATGCA
GCTCCAGAGGGcctcggtggaggacgtggaggccttcgTTCCCGAGCATT
TGAAGGCCTATGTGTCCGACTCGGTGTATGAgtaggggaagggggtgggc
cTCGGAAGGACGCGCGCGGGATCGAGagccggaggggaaatggCCCGGCT
GTGATCAGGAGCGGCAGTGAGGTATCAGAGGTGGaacggaaagggaagag
tgGGCGCGGTAACGTCAAGGGGAAGCTTGGCAGCGGGCGGTAGCGCGCTC
TGGTCTCTTGGCTAACGCACGTTGGGGGTGAGTCGCCGGACGAGGtagcg
gggggggggagggaggaaggggggttggtcgaggagggatgcCGATGGGG
TGGGAGCAGGCAAAGGCGTCGATGGCAGGACAATgtaaggaaggaagaag
ggtctcgggagggggagaaaggcagtGCAAAGGAGGTTGTACTGTGCTGA
AAGAGGTGCTGTGCAAAGGAAATGGATGATGAGTATGAAGTGAAGGGATA
TGAAATGAGAGAAGTGAAGGACCGTTTATGAATCCgaaaggacggagaag
aaagataACGCCGGAGACCAGACAGCCACCGGTAACGTGTAAAGTAGAGC
AAAGCACCGAGGGTCGagcaggtaggaagggaggtagctAGGAAGGCACA
CATGGCTTTCCTGCCTCTGGTGGGCTGAGGCCAAAGCAACCCGCCCGAGT
GAGAAGTcgggcctccaaggcccggcGAATAACAAATCAAGAATGGACGT
GACAGCCACGCGGACAAGAATTGACCTTTGTTCTTCGCGGAAAGATCAGT
CTCATAATATTCATGAAAATGCCGAAGGGGCGCCACATGTT
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Coding sequence (CDS) from alignment at KK037253.1:127301..129741+

>rna9387 ID=rna9387|Name=rna9387|organism=Nannochloropsis gaditana|type=CDS|length=1494bp|location=Sequence derived from alignment at KK037253.1:127301..129741+ (Nannochloropsis gaditana)
ATGCCTAAGTTAACGAAGCGAGAGCAAGAGAGGGCCCTGGCACAGGCCGT
TGCCGCTGATAACAATGGAGATGGAGcttcctctccgccatcCGCGgctc
ccactgcctcccaGTCTCATTTCACGGGCAGATCCCTGCACCTCCCTGCG
GCCTCGCACCTCTCAGCCCAGGTCACGGGGGCTTCTTCGCCCTTCGACAA
CCAGTTTTCGACGGAAGAAATTGCCAGCTTGATGGCTGACACGGCTTCCT
TCGATGTGAACGCGGGAGGCGAAACCTCCACCCCTgtccttcctacctcc
agggcaggggcaggaggaaggaggttgggaTGGCCGGGTCCGGGGGAGGA
TGCCGGAAACGGGGTGGAAGATGCGAAGAAATCTACGGTGCCTTTGATCA
TGGACGGTATGGGATACGTCGGCAATGGAGGAGCTGAGGCGGGAGGGttc
aagaggaaggcagaggaggcgtttggtggaagaggaggaggaggaggaga
aagggagggcgacccAGGGGCAAATGCGTGGGAGGAACTGAGCCAGCATC
CCAGATCTCAAGCTCCTGTCGTCAACGGTCGCGTGCGTAAGACACCAGTC
CGCCCCACGGTGGGCGGCAGCAAATGCGGCGCGGGGGCCGCTACCCCCGG
CTCAGCGGATAAGTCTTCCAAGGGCTTGCGGCACTTCAGTCTTCAGGTGT
GtcggaaggtggaggagaaaggccgcACCAACTACAATGAGGTGGCGGAT
GAATTGGTGGCAGAGGTGCTGGCGCAACGCGCCGAGCCCTCGGGGACGGG
TCCGGTGGAGAAATACGACGAGAAAAATATCCGGCGCCGAGTCTACGACG
CTCTGAACGTGCTCATGGCCATGGACATCAtcagcaaggagaagaaggag
atccGATGGAAAGGCTTGCCGTCCAATGCCCAGCATGACCTGGAGGTCCT
GCGCCGGGACAAGCGCCGGCTGGAGAGCAGCCTTGCCAAGAAGCGGGAGC
TCCTGCAGGAGCTCATTCTCCAGCGCATCGCTTTTCAACGCTTGATGCGT
CGGAACAGcgaaagggaagaaatgatggccacgaccacgtcaagtgcagc
ggcagcagcagcggcggcggaggcggctgccgccgctgccaacGCCTCGG
CCGGGACGGGCTCCTCAGCCaggtcctctccctcttcttccacagCGACC
GCGcgtgctgctgcggccgccgccactgccgccgTCCAAGCAgctgaaga
cgaggagcaaCGGCGTGTGCCCTTACCCTTCATCATTGTAAACACGCACT
CCCAGACCCTGATCCATTGCGAGATGGCTGAAGACCGGTCCGACGTGTTT
TTTAATTTCTCCGCCCCCTTCGAGTTGGCAGACGACAACGAGATATTGAG
GCGGATGCAGCTCCAGAGGGcctcggtggaggacgtggaggccttcgTTC
CCGAGCATTTGAAGGCCTATGTGTCCGACTCGGTGTATGAgtag
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Synonyms
Publications