rna9383, rna9383 (mRNA) Nannochloropsis gaditana

Overview
Namerna9383
Unique Namerna9383
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1627
Alignment locationKK037253.1:120971..122100 -

Link to JBrowse

Properties
Property NameValue
Productputative oxidoreductase yrbe
Orig transcript idgnl|cribi|Naga_100214g7.6241.mrna
Orig protein idgnl|cribi|Naga_100214g7.6241
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:120971..122100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100214g7gene9101Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9383rna9383-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21326.1cds9353Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9383 ID=rna9383|Name=rna9383|organism=Nannochloropsis gaditana|type=mRNA|length=1627bp
GTCTTCTACACGAGGGCCACATCGGTGCAAGTTCGAAAAATCATATCTCA
ATCTTCAGATCCTTTCCAGAAACGGTGCTCAGGCGGGAAAGTGAAGGTTT
TCTACTCTAGTGGCTACCCCAATTCTCTCCGACTGTCGCAGACGGTCCTT
CGTTGCGCACGCACCGCGCACTACCTCTGAAATTCGACAAACGAAGTTCA
ATTTTACATCTAACTTCTTTTTCATCCTCTCACCAAAGGCCTAGCTTCTA
TGTCGCGGAAACGAGCCTCAGGAGGCGGTCGATCGGAGGAGGAGATCCAA
TTTGACGCAACAGAGGAGGTCGAGTTCACCGTCACCAAGGATGTAGCTGT
CAAACCCACATTTGAGGCGATGGGCCTACGTGAAGAGCTCCTACGAGGCA
TCTACGACTACGGTTTCGAAAAGCCGTCTGCCATCCAACAGCGGGCCGTC
TTGCCCATCATCAAAGGCCACGACGTGATCGCTCAGTCCCAGTCGGGTAC
GGGGAAGACCGCGGTCTTCTCCATGGGCATCCTCCAGCGCCTGGACACAA
GCAGCAACGACACGCAGGCCCTGGTCCTGTCCCCGACCCGGGAATTGGCC
GAGCAGACGCAGAAAGTCATCCTATCCCTGGGTGACTACATGAACGTGCA
ATGCCACGCCTGCATCGGAGGGAAGAGCATCGGGGAGGACATCCGCCGCC
TGGACTACGGTGTGCAAGTGGTGAGCGGGACGCCGGGCCGGGTCTTTGAC
ATGATCCGACGGCGGAACTTGAAGACAAAATCCTTGAAGATGCTTGTGAT
CGACGAGGCGGACGAGATGCTGAACAAAGGCTTTAAGGAGCAGATCTATG
ACATCTACCGGTACCTCCCTCCGACCACGCAGGTGGTGCTGATCAGCGCC
ACCCTGCCCCAGGAGGTACTGGACATGACCAAGAAGTTCATGAACGAGCC
CATCAAGGTCCTGGTGAAGCGTGACGAGCTCACGTTGGAGGGCATCAAGC
AGTTTTTCGTGGCGGTGGAGAAGGAGGAGTGGAAGTTCGACACCTTGTGC
GATTTGTACGACACACTCACCATCACGCAGGCCGTAATCTTTTGCAACAC
CCGGAAGAAGGTGGACTGGCTGCGCAACAAGATGGTGGAGGCGAACTTCA
CGGTCTCGGCTATGCATGGTGACATGCCGCAGAAAGAGCGCGAGGCTATC
ATGGAGGAGTTCCGGTCGGGGGCGACCCGGGTGCTGATCGCCACGGACGT
CTGGGGCCGGGGTCTGGACGTGCAGCAGGTCTCGCTCGTCATCAACTACG
ACCTGCCCAACAACCGGGAGCTCTACATCCATCGGATCGGCCGGTCTGGG
CGCTTTGGGCGGAAGGGCGTGGCGATCAACTTCGTCAGGAACGACGACAT
CTCCATCCTGCGCGACATCGAACAGTACTACTCGACTCAGATCGATGAAA
TGCCCATGTCCGTCCACGACCTTGTCTGAGAGGGGGGCTCGAGAGGGAGA
GGGGTGTGTCATATGAGGGCGGCGGGGAATTCGTGTGTGAAAGGAAAGCA
TGAGTCGATAAAGGGGGGGGTGGAGCGAGACAAAGAAGAAACGGGGGTCG
ATAGCGCTGATCCAAAGCGTCGTCTCA
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protein sequence of rna9383

>rna9383-protein ID=rna9383-protein|Name=rna9383|organism=Nannochloropsis gaditana|type=polypeptide|length=336bp
MPSSHPRHQILVIGAGRMGTIRAAAFYGSRTSTLAGIVDADEAKAAELGR
QYHAPAFSNLSTALRALPDVRAVWICTPTPLHTESIKESMEAGLAVGIEK
PVAIQTDDIRLCYQWAAEKNVPLYCSFQRRIDPSYVQLLQTVKEGKIGDI
RSVRAVFRDHPVPSLEFLRLGGDIFHDLVVHDADFIMHLLQETPSSVYAT
GSAFHPSLRAHRIIDTAHCLLHFPSGVLASIELSRSSPYGYDQRIEVCGT
EGMLYIKNELNTHVVSVTAAGGIAHANPVHSFPERFARAYVMEVEDFGKI
LNGKSAPTITCEDSINSTRVAQACGRSVIDGRPVPL
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mRNA from alignment at KK037253.1:120971..122100-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9383 ID=rna9383|Name=rna9383|organism=Nannochloropsis gaditana|type=mRNA|length=1130bp|location=Sequence derived from alignment at KK037253.1:120971..122100- (Nannochloropsis gaditana)
ATGCCGTCAAGCCACCCACGCCATCAAATCCTTGTCATTGGTGCCGGGCG
TATGGGAACTATTCGAGCGGCCGCTTTCTATGGCTCCCGGACCTCTACGC
TCGCCGGCATTGTCGATGCTGACGAGGCGAAAGCAGCCGAGCTCGGACGA
CAATATCACGCACCAGCCTTCTCAAACCTCTCTACCGCCCTTCGCGCCCT
CCCTGACGTGCGAGCAGTTTGGATCTGTACGCCGACGCCTTTGCACACTG
AGAGCATCAAAGAGTCGATGGAAGCGGGTCTCGCTGTGGGGATTGAGAAA
CCCGTAGCCATCCAGACCGACGACATACGCCTATGTTACCAGTGGGCCGC
CGAGAAAAACGTCCCGCTCTACTGCAGCTTTCAGCGGAGGATAGACCCTA
GCTACGTGCAGCTCCTTCAAACCGTGAAAGAAGGAAAGATAGGAGACATC
CGATCCGTCCGGGCGGTATTCCGGGACCATCCCGTTCCTTCCCTGGAGTT
CTTGAGGCTGGGAGGGGACATCTTCCACGACTTGGTGGTGGGTGCGCCAA
GAGGGGGAGAAAATGGGGAGGGAAAGCTACGGGGAGCAGAATGAGCCCAA
CATGTTAGAGACCCACTCGCTTCCTCCTCCTATCCCTCCCCTCCTCTACA
CCGCAGGTGCATGACGCCGACTTCATCATGCACCTACTTCAAGAAACGCC
ATCTTCCGTCTACGCCACTGGGAGTGCCTTTCACCCCTCGCTCCGCGCCC
ACCGCATCATTGACACCGCACACTGCCTCCTTCACTTCCCCTCCGGCGTC
CTCGCGAGCATTGAATTGAGTCGTTCTTCGCCCTACGGGTACGACCAACG
CATAGAGGTGTGCGGGACTGAAGGTATGTTGTATATAAAAAACGAACTGA
ACACGCACGTCGTCTCTGTGACGGCGGCGGGGGGCATCGCGCATGCCAAT
CCTGTGCATTCTTTCCCTGAGCGCTTTGCTCGTGCCTACGTCATGGAGGT
GGAAGACTTCGGAAAGATATTGAACGGGAAAAGCGCACCAACCATAACGT
GTGAGGACAGTATAAATAGCACGCGTGTTGCGCAGGCTTGCGGGCGCTCC
GTCATAGATGGAAGGCCCGTACCCTTGTGA
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Coding sequence (CDS) from alignment at KK037253.1:120971..122100-

>rna9383 ID=rna9383|Name=rna9383|organism=Nannochloropsis gaditana|type=CDS|length=2022bp|location=Sequence derived from alignment at KK037253.1:120971..122100- (Nannochloropsis gaditana)
GTGCATGACGCCGACTTCATCATGCACCTACTTCAAGAAACGCCATCTTC
CGTCTACGCCACTGGGAGTGCCTTTCACCCCTCGCTCCGCGCCCACCGCA
TCATTGACACCGCACACTGCCTCCTTCACTTCCCCTCCGGCGTCCTCGCG
AGCATTGAATTGAGTCGTTCTTCGCCCTACGGGTACGACCAACGCATAGA
GGTGTGCGGGACTGAAGGTATGTTGTATATAAAAAACGAACTGAACACGC
ACGTCGTCTCTGTGACGGCGGCGGGGGGCATCGCGCATGCCAATCCTGTG
CATTCTTTCCCTGAGCGCTTTGCTCGTGCCTACGTCATGGAGGTGGAAGA
CTTCGGAAAGATATTGAACGGGAAAAGCGCACCAACCATAACGTGTGAGG
ACAGTATAAATAGCACGCGTGTTGCGCAGGCTTGCGGGCGCTCCGTCATA
GATGGAAGGCCCGTACCCTTGTGAATGCCGTCAAGCCACCCACGCCATCA
AATCCTTGTCATTGGTGCCGGGCGTATGGGAACTATTCGAGCGGCCGCTT
TCTATGGCTCCCGGACCTCTACGCTCGCCGGCATTGTCGATGCTGACGAG
GCGAAAGCAGCCGAGCTCGGACGACAATATCACGCACCAGCCTTCTCAAA
CCTCTCTACCGCCCTTCGCGCCCTCCCTGACGTGCGAGCAGTTTGGATCT
GTACGCCGACGCCTTTGCACACTGAGAGCATCAAAGAGTCGATGGAAGCG
GGTCTCGCTGTGGGGATTGAGAAACCCGTAGCCATCCAGACCGACGACAT
ACGCCTATGTTACCAGTGGGCCGCCGAGAAAAACGTCCCGCTCTACTGCA
GCTTTCAGCGGAGGATAGACCCTAGCTACGTGCAGCTCCTTCAAACCGTG
AAAGAAGGAAAGATAGGAGACATCCGATCCGTCCGGGCGGTATTCCGGGA
CCATCCCGTTCCTTCCCTGGAGTTCTTGAGGCTGGGAGGGGACATCTTCC
ACGACTTGGTGGTGCATGACGCCGACTTCATCATGCACCTACTTCAAGAA
ACGCCATCTTCCGTCTACGCCACTGGGAGTGCCTTTCACCCCTCGCTCCG
CGCCCACCGCATCATTGACACCGCACACTGCCTCCTTCACTTCCCCTCCG
GCGTCCTCGCGAGCATTGAATTGAGTCGTTCTTCGCCCTACGGGTACGAC
CAACGCATAGAGGTGTGCGGGACTGAAGGTATGTTGTATATAAAAAACGA
ACTGAACACGCACGTCGTCTCTGTGACGGCGGCGGGGGGCATCGCGCATG
CCAATCCTGTGCATTCTTTCCCTGAGCGCTTTGCTCGTGCCTACGTCATG
GAGGTGGAAGACTTCGGAAAGATATTGAACGGGAAAAGCGCACCAACCAT
AACGTGTGAGGACAGTATAAATAGCACGCGTGTTGCGCAGGCTTGCGGGC
GCTCCGTCATAGATGGAAGGCCCGTACCCTTGTGAATGCCGTCAAGCCAC
CCACGCCATCAAATCCTTGTCATTGGTGCCGGGCGTATGGGAACTATTCG
AGCGGCCGCTTTCTATGGCTCCCGGACCTCTACGCTCGCCGGCATTGTCG
ATGCTGACGAGGCGAAAGCAGCCGAGCTCGGACGACAATATCACGCACCA
GCCTTCTCAAACCTCTCTACCGCCCTTCGCGCCCTCCCTGACGTGCGAGC
AGTTTGGATCTGTACGCCGACGCCTTTGCACACTGAGAGCATCAAAGAGT
CGATGGAAGCGGGTCTCGCTGTGGGGATTGAGAAACCCGTAGCCATCCAG
ACCGACGACATACGCCTATGTTACCAGTGGGCCGCCGAGAAAAACGTCCC
GCTCTACTGCAGCTTTCAGCGGAGGATAGACCCTAGCTACGTGCAGCTCC
TTCAAACCGTGAAAGAAGGAAAGATAGGAGACATCCGATCCGTCCGGGCG
GTATTCCGGGACCATCCCGTTCCTTCCCTGGAGTTCTTGAGGCTGGGAGG
GGACATCTTCCACGACTTGGTG
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Synonyms
Publications