rna9379, rna9379 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9379
Unique Name	rna9379
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3451
Alignment location	KK037253.1:113006..114414 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100214g11.6233.mrna
Orig protein id	gnl\|cribi\|Naga_100214g11.6233
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:113006..114414 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100214g11	gene9097	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21318.1	cds9349	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9379	rna9379-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:113006..114414-
coding sequence from alignment at KK037253.1:113006..114414-

mRNA sequence

>rna9379 ID=rna9379|Name=rna9379|organism=Nannochloropsis gaditana|type=mRNA|length=3451bp
ACCGGCTCCCACGCGCTAAAATAAGCCCAGGTTCGAGATCTATGCCTGCC
TACGGGTAAATCAGGAGGATATGGGAGAGCGGGAGTAGTCAGTAAGCATA
GAAGGCCCCCTGCATGGTGCTGAGGGAGGAAGCCTGAATGAAGAAGAGAG
GCGAAGTCGCTTGTCTCTTTTCCGGCAAGTTTGAGCGAGGGTCGATACAT
CGGACAACACCAAGCTCCCAGTTGCGGCTTTGCCTGAAAGCATGCTAAGA
ATACCCAACTGAGCCTAGACGGCGTCTGGTGCTTGGATTTTTGCTGATCG
AACTCAAAGGCTATCGCGAGACGATACGGGAACAAAGGATTAACAGAGCT
CGGGCTGAGGCAAGGAATTAATGCTTCTGGTAATTCGCCTGATGCGCCCG
AGACGCAAACTGCGATCATGCCATTCGAAGGACAGACAGACCCCCCACTA
CTTTTTTGTGATTTTGACAGTCGCAAGCACGAACATCACCACATGACTGG
GACACTGGAAGACACTATGTGTGGCCATCACCCACAGGTCGGGGGTACTC
GCACGGGCTCGCGACCTCCCCCCCTTTTCTTGCCTCAACCTTTTGCAACC
ATGAAAACACATTATACCGCATATATTTAGCACAGACGTCATGCAAAAAA
GTTAGAGCCTTTGCACGATTTACCCCCCATTCTGTTGCCGCCCGCCATGA
ACGCCTCTCCCTTTTTACCTCCCGTCCCACCGGCCTTTCCTCTCCTTCCT
ATCACCTCCGACGCCACGCTTCGGAAATGCAAGTCATTTCCCTGCAAATC
TTGCGACATCTTCATCGCGTCATATCCCAAAAGCGGGACGACGTGGACAC
AAAATATTGTATACCAGCTTCTGGCCGCTGCTGCCGACGTTGCGAAGAAA
GATCGACTCAACAAGAGGAGGACGGAGCACGGGGAAAATGAAGGAAAGGC
CTATGTGGGGGTGCGCAGCAATGGAGGAAGCCGATCCTGCGGGGAGTCAG
CCTTAGAAGTGGTTGACACGCAGAAGGATGTAGAGAGAGTAGATCTGTCT
ATCGAGCACATCAGTGACGTAGCTCCTTTTTACGAGGCGGATAGGACCTG
GGATGGAGAGGGACTGGCTGCCAGATATGAGGCCATGCACGCACGCCTGG
GGCGGCGCATCTTCAACACACACTTACTGTGGGGCATGCTGCCCTGCACT
GGAGACGAGGAAAGGGGGGAGGGGGCAGAGGGAATAGAGAGGGAAGAGGA
CTCGCCCTGCTACCTGTACATCGTCCGTGACGGGCGGGACGCTTGCGTGT
CCTTTTTCCACCACATGAAGAGCATGGCGAAGGAGGACGGCGGCTTTGAA
GGAGACTTCTCAATCTTCTTCCAGGAATGGTTGGAGGGGCGACTGGCCTA
CGGGCGGTGGACGGACCACGTGGCGGCCTGGATGGGGAGGGAGCGGGAGA
GGGGGCGGGGGAGGAACGTCCGTGTCTTGGTGGTGCGGTACGAGGACTTG
AAGGCGGACCTGACGGGGGAGCTGAAGCGTATCGCCCGGCACTGCGGCAT
CGACGTGGGCGGCGGGATAGGGGAAAAGGGGGAGGAGGTGTGGGAGGCAG
TGCGGGAGAAATGTTCCTTCGAGTACATGGCAACAAACCGAAGAGTTTAC
GAACCACGCAGCGTGACCTGGAGGGACCGGAGCTTTCGGTTCATGCGCAA
GGGGGCGGTGGGCGATTATCGACAGCTTTTTACGGAGGACCAATGCGTGT
GCTTCGCCGAGGCGGTGAGGGAGGCGCAGAGAAAGTCAGGGCAGGCAGAG
GCGTGTCTGATGCGAGAATTGCTCGGGGGGGAGGAGTGGGAGAGGGGAAG
AAAGGAGGGGGAAGAGAGGGCTTGACGGCCAAGTTGCGCGGGTGGCGCCT
GGTACGTCGCAAGTCTGCGTAGAACACAATACATCCTGAAACAAGATTGA
GAGAAAGAACAGAACTGCCCGCGGAAGTATTCCTTGCCCGAGCTTAAGAT
TTCGCCCGAGCCAGAGATGCCTGGCCCTCGTCGCCCTGAGGCCAGAGGAC
ATACACCAGAACCAAGCCGTCCGCTGACACCACCTCTCCTCCCTTGCCCA
ATTCGGCGTCGCCTAAGCGCCGCTGCATGATGTGCCACAGACCTCCCTTT
CCTCCCTTCGCACCCCTTGCCGAAGCTTTGTATTCCACCTCCCTCTCTCC
GAGAACCACATTACTCCACTCGAGGATGAGTCCTGGCTCTGCCAGGTGAT
TCAGGCCTAAGAGGTGAGAGGTAACTAAAGTATCCAGGCATTCCGCATTT
GACACATGGGCAGCTTCAGGACTAAACAAGTGACAGAACAACCGATTCTT
CATCAGGCCTGTCGAAGTCGAGGGGGGAGGAGCGAGGGAGCTGGAAGAAG
AGGATGCGTGCCTTGCCCGGCTTGTGACGACGAGAACAGGAACCGGTAAA
TCGTAGAAGGCACGGCTGAAAAAGGAGTCACTAGGGCTAGGTGGAGGAGT
CGAAAGAGGTGGTAGGGCCTGTCGGCACCGCCTCCCTTTTTTACCTGTAT
GCACCTCGTCCACGATCAGAAAAGTTCCCAGCATGAAGGCATCCTGCAAA
TTTCGCTTTCGGGTGTGGTTGACATGGTTGCCTGAAGGGACTTGCCAGGG
TTCATAGAAATCAAGAACGGCGTCGGGGTCCTGAGACGATAATGCCATAA
CACGACGGTCGTCCAAGAAATACTGCCTGGCATCGACGGAATTGAAATGG
TTGAGGGCGTTTTGCCCAATCATGTCCAAACGATTGAATCCACTGGCATG
GTCCATGAGGGCGTTGAAATAGACGTAACAAAAGCCAGTTTGATCGTCCA
TTCGCGTGCGGGGGTCGGCATCTTTTGCAAAGACCATAGTGGGGAAATGC
TCGAGAATGGCGAAGCATAAAGCTTCCTTTTGCTGCTGGTCATGAAGTTC
TATGCCCGTTCCCTGCTCTTCAATGGGCTGATGCTGGATTGATGACGGCA
TATCACATGCGTTCGTGATCGATGAAGCTGCAAGAGAGACATGTTTGGTC
GCAGGCTCCATGGACTAGGCACAGGAGAGGTGGGGGAGGTTAACGTCGAT
TCCCACCGGAAGAAGGGCCCGAAATCCCGTGTTCTATCCTTATATAAGTA
TCAGACCCTGCATAAGGTCTACCATGAAATATCATGAGGATCCGTCACAG
GTCTTGAGTGTTCGTATTGATCAGCGAGATGTAACAAACCATCTTTGTCT
TCCCCCCAGAGGCTGCCTGTGTTCTCCGACCGAGCCAAGGAATCGATCCG
TGCGATCTCTCCTGCCATGGTCACATTCCATCAGACTTTCAAAGCAATAC
CTAAGTCACCGTAACAATATATGCGGCAGCATTAACAGATTATTCCCTTT
AAAGAATCAGATCAAGGCTCCCGCAAGTACATATGTCTAGCTGCTTGATT
G

protein sequence of rna9379

>rna9379-protein ID=rna9379-protein|Name=rna9379|organism=Nannochloropsis gaditana|type=polypeptide|length=355bp
MEPATKHVSLAASSITNACDMPSSIQHQPIEEQGTGIELHDQQQKEALCF
AILEHFPTMVFAKDADPRTRMDDQTGFCYVYFNALMDHASGFNRLDMIGQ
NALNHFNSVDARQYFLDDRRVMALSSQDPDAVLDFYEPWQVPSGNHVNHT
RKRNLQDAFMLGTFLIVDEVHTGKKGRRCRQALPPLSTPPPSPSDSFFSR
AFYDLPVPVLVVTSRARHASSSSSSLAPPPSTSTGLMKNRLFCHLFSPEA
AHVSNAECLDTLVTSHLLGLNHLAEPGLILEWSNVVLGEREVEYKASARG
AKGGKGGLWHIMQRRLGDAELGKGGEVVSADGLVLVYVLWPQGDEGQASL
ARAKS

mRNA from alignment at KK037253.1:113006..114414-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9379 ID=rna9379|Name=rna9379|organism=Nannochloropsis gaditana|type=mRNA|length=1409bp|location=Sequence derived from alignment at KK037253.1:113006..114414- (Nannochloropsis gaditana)
GCAGCCTCTGGGGGGAAGACAAAGATGGTTTGTTACATCTCGCTGATCAA
TACGAACACTCAAGACCTGTGACGGATCCTCATGATATTTCATGGTAGAC
CTTATGCAGGGTCTGATACTTATATAAGGATAGAACACGGGATTTCGGGC
CCTTCTTCCGGTGGGAATCGACGTTAACCTCCCCCACCTCTCCTGTGCCT
AGTCCATGGAGCCTGCGACCAAACATGTCTCTCTTGCAGCTTCATCGATC
ACGAACGCATGTGATATGCCGTCATCAATCCAGCATCAGCCCATTGAAGA
GCAGGGAACGGGCATAGAACTTCATGACCAGCAGCAAAAGGAAGCTTTAT
GCTTCGCCATTCTCGAGCATTTCCCCACTATGGTCTTTGCAAAAGATGCC
GACCCCCGCACGCGAATGGACGATCAAACTGGCTTTTGTTACGTCTATTT
CAACGCCCTCATGGACCATGCCAGTGGATTCAATCGTTTGGACATGATTG
GGCAAAACGCCCTCAACCATTTCAATTCCGTCGATGCCAGGCAGTATTTC
TTGGACGACCGTCGTGTTATGGCATTATCGTCTCAGGACCCCGACGCCGT
TCTTGATTTCTATGAACCCTGGCAAGTCCCTTCAGGCAACCATGTCAACC
ACACCCGAAAGCGAAATTTGCAGGATGCCTTCATGCTGGGAACTTTTCTG
ATCGTGGACGAGGTGCATACAGGTAAAAAAGGGAGGCGGTGCCGACAGGC
CCTACCACCTCTTTCGACTCCTCCACCTAGCCCTAGTGACTCCTTTTTCA
GCCGTGCCTTCTACGATTTACCGGTTCCTGTTCTCGTCGTCACAAGCCGG
GCAAGGCACGCATCCTCTTCTTCCAGCTCCCTCGCTCCTCCCCCCTCGAC
TTCGACAGGCCTGATGAAGAATCGGTTGTTCTGTCACTTGTTTAGTCCTG
AAGCTGCCCATGTGTCAAATGCGGAATGCCTGGATACTTTAGTTACCTCT
CACCTCTTAGGCCTGAATCACCTGGCAGAGCCAGGACTCATCCTCGAGTG
GAGTAATGTGGTTCTCGGAGAGAGGGAGGTGGAATACAAAGCTTCGGCAA
GGGGTGCGAAGGGAGGAAAGGGAGGTCTGTGGCACATCATGCAGCGGCGC
TTAGGCGACGCCGAATTGGGCAAGGGAGGAGAGGTGGTGTCAGCGGACGG
CTTGGTTCTGGTGTATGTCCTCTGGCCTCAGGGCGACGAGGGCCAGGCAT
CTCTGGCTCGGGCGAAATCTTAAGCTCGGGCAAGGAATACTTCCGCGGGC
AGTTCTGTTCTTTCTCTCAATCTTGTTTCAGGATGTATTGTGTTCTACGC
AGACTTGCGACGTACCAGGCGCCACCCGCGCAACTTGGCCGTCAAGCCCT
CTCTTCCCC

Coding sequence (CDS) from alignment at KK037253.1:113006..114414-

>rna9379 ID=rna9379|Name=rna9379|organism=Nannochloropsis gaditana|type=CDS|length=1068bp|location=Sequence derived from alignment at KK037253.1:113006..114414- (Nannochloropsis gaditana)
ATGGAGCCTGCGACCAAACATGTCTCTCTTGCAGCTTCATCGATCACGAA
CGCATGTGATATGCCGTCATCAATCCAGCATCAGCCCATTGAAGAGCAGG
GAACGGGCATAGAACTTCATGACCAGCAGCAAAAGGAAGCTTTATGCTTC
GCCATTCTCGAGCATTTCCCCACTATGGTCTTTGCAAAAGATGCCGACCC
CCGCACGCGAATGGACGATCAAACTGGCTTTTGTTACGTCTATTTCAACG
CCCTCATGGACCATGCCAGTGGATTCAATCGTTTGGACATGATTGGGCAA
AACGCCCTCAACCATTTCAATTCCGTCGATGCCAGGCAGTATTTCTTGGA
CGACCGTCGTGTTATGGCATTATCGTCTCAGGACCCCGACGCCGTTCTTG
ATTTCTATGAACCCTGGCAAGTCCCTTCAGGCAACCATGTCAACCACACC
CGAAAGCGAAATTTGCAGGATGCCTTCATGCTGGGAACTTTTCTGATCGT
GGACGAGGTGCATACAGGTAAAAAAGGGAGGCGGTGCCGACAGGCCCTAC
CACCTCTTTCGACTCCTCCACCTAGCCCTAGTGACTCCTTTTTCAGCCGT
GCCTTCTACGATTTACCGGTTCCTGTTCTCGTCGTCACAAGCCGGGCAAG
GCACGCATCCTCTTCTTCCAGCTCCCTCGCTCCTCCCCCCTCGACTTCGA
CAGGCCTGATGAAGAATCGGTTGTTCTGTCACTTGTTTAGTCCTGAAGCT
GCCCATGTGTCAAATGCGGAATGCCTGGATACTTTAGTTACCTCTCACCT
CTTAGGCCTGAATCACCTGGCAGAGCCAGGACTCATCCTCGAGTGGAGTA
ATGTGGTTCTCGGAGAGAGGGAGGTGGAATACAAAGCTTCGGCAAGGGGT
GCGAAGGGAGGAAAGGGAGGTCTGTGGCACATCATGCAGCGGCGCTTAGG
CGACGCCGAATTGGGCAAGGGAGGAGAGGTGGTGTCAGCGGACGGCTTGG
TTCTGGTGTATGTCCTCTGGCCTCAGGGCGACGAGGGCCAGGCATCTCTG
GCTCGGGCGAAATCTTAA

Synonyms

Publications