rna9368, rna9368 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9368
Unique Name	rna9368
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1794
Alignment location	KK037253.1:78692..82184 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100075g6.2887.mrna
Orig protein id	gnl\|cribi\|Naga_100075g6.2887
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:78692..82184 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100075g6	gene9085	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9368	rna9368-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21353.1	cds9338	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:78692..82184+
coding sequence from alignment at KK037253.1:78692..82184+

mRNA sequence

>rna9368 ID=rna9368|Name=rna9368|organism=Nannochloropsis gaditana|type=mRNA|length=1794bp
ATGTCAGTCATAAAGCAAGGTGAAGACATGAGCATCAATGAGCGGGAATT
CATTCTTACGGCGCTAAAGGATGAAAATTGTCGCGCCGATGGCCGGACGC
CTGCGGATACCCGTGAGCTGCGTGTTACTTACGCGCGTGCTGAAGGCCAG
GCAACCGCCGAAATCCAGCTGGGTAAGACGCGCGTGCTTACTGTGGTTAC
TAGCGAGCTTACCCCGCCCTATCCTGATCGGCCTGCAGAAGGATTTTTGA
ACTTGAATGTGGAATACTCTCCCATGGCAACACTTGGAATCGATAATGCA
CGCACTAATCCGACATTAGTGGAAGTGGACCGCGTCATTGAGCGGTGCTT
GCGTCAAAGCCGTGCACTAGACACAGAGGCACTTTGTGTTATCGCTGGCA
GTAAAGTGTGGTCCTTGCGCTGCGACGTGCGAATCCTAGATGACGCAGGG
AATGTTGTGGACGCGGCATGCTTGGCCACAGTCGCAGCGTTGATGCATTT
TCGTCTCCCAGAAGTAACGGTGTTGACTGGAGGTTCAGACGAGAGGAGCA
ACAGCAGCGCAAACGACGGTGAAAGCAGTGAGCCGTCCGCCTTGCCCATC
CACCACGTTCCCATCTGCGTCACTTTCGTGCTCTTTAACACGTCTCCTAT
CGTCTCTGTCATTGACCCTACGGAGCGCGAGGAGCTGGTGATGGGGGGCC
GTATAACTTTTTCAATCAACGTGCACAGAGAGGTGTGTGCCATGCAGAAG
ATTGGAGGGCTGGCACTGGCCCCGACCAGCCTTGCGCGGTTGGCAGAGAT
AGCCATGGAGAAGGTGGGCGACTGGCACTCTCTCTTACAGACTTCTTTGG
AGGCGGCGGACTCGCAAGCCAAGGCGGAAAGATTGCGATGCGTGCGTGGG
ACTGCCTCCATGCACGTTCGGAGAGGAGCGCTGGGAGACGCAGAAGGAGA
AAGGGGAGAAAAAGAAGTGGAAGGAGGGGCGGATGCACCTACATCGCATA
TCGAGACAGCTCATCTTGATTTTGCAGAGTTGCACGCACCCATCAAAGTC
CGAGAGGGATCGGAGAAGCCGCCTATCGATGAAGAGGAGGAGACACGTAC
GTTGAGTGTATTGGAGCAGGCAGCTTTGGATGCAGAGGACTACCGAATGA
AACAAGGAACCAAAAACTTGACTCAAGGGACACAGGAGACGCAGTTCTCA
TGGACAGGGGCAGCAACTCGTAACTCAGATACAGGAGCTGTCGCAGGGCT
TACAGACTCGGTGGTGACTGAAAGCACAGGCGTGAACGACGTGCGTACAG
CAGCTTGTCCGGGATCGACTGCCGAAACTGCACCAACTTCACATAGGTCG
AGCATGGAAACCAAACCAGCAGGAGCTCGTGAGCTAGGGAGAAAAACAAA
GACATTGGGGAGAAGAATGGACGTAAGGAACGGAGAGGGTAGGGACACGG
AAGAGGAGGACGATGAGGAGGAGGGGGATGCCGTCATGATGGTTTCAGAA
TTTGCATCAAGCACCGAAAGCAGTCTCGGAACCCCTTATGATAAGACGGC
CATTGCAGCGACAGGCTCCAATGCGAGAAGGCCTTCGTCACAGGGCGCCC
CGCAGGCGACAGCTACTACTGAGCGTGCTGAAAATGATGACGAAGAAATT
AAAGATTTGAGAGATGCGGTGAAAAAACCACGTGTACGAGGACAGAACGG
AAGCTCGAGTGGCCGAGGTGCTGCGAAGCGTCCCAGTGGTACGTCGAGTA
CGGGCACAAGCAAGAACAGACCGAAAGTAGGCACGAAAAGATAA

protein sequence of rna9368

>rna9368-protein ID=rna9368-protein|Name=rna9368|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
MCREGMEALGGGEGSRRPRFNFGNVHEHIAGSIMSWPLGVLFFWLGAPHP
LFTCEGCNVQRMRKIWHMPIRDSLRSGRSNTRRIVYEVTHKSARRKEKIF
FYQAFSTTSLVYYCDSKDGQIP

mRNA from alignment at KK037253.1:78692..82184+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9368 ID=rna9368|Name=rna9368|organism=Nannochloropsis gaditana|type=mRNA|length=3493bp|location=Sequence derived from alignment at KK037253.1:78692..82184+ (Nannochloropsis gaditana)
GGCGGGAGGtcggaggatgaaggagacCAGCAAGTGAGGAGTTTCGAATC
GAAATGAGTTGTGGCCTGTATAAGGATACCAAGTCTGGATGAAATCGTTT
TCAAATGACAGCTTGAGTGTTTGATTAGATACACAAAGCGCATGTTTTGA
ATAATTGATAGTACCCAAGACCCGGTTTTCATCGCTCACTTCTGTCGTGA
ACGTCTCACCTCACAATCGAAATTAAATTGCTTGCACACGCCCTGCAAGA
GACCTGACAATCCCTCTATTCTTTGATCAAATATCTCATTGTACACTTAA
AATTGTACACATTTCATATTAGCAGTTGAGATGGGAGCATGTCATTCGCA
CGTTACGAAAGGTGTGCTTTTAGCGCTGCGTAGATTGAAGTAACCTCGCA
CCCATCAGCCAAGCACTCGAGTTGTCTTCATTGTTTTCACAAGGCCTTGT
ATATGAATGTATCCCGTAAAAACTAAACTTTCGATGGAATTGTGCGATTC
TAACCACCGGACCTTTCGTTCACCTGCATGGAAAGCACCCAAATGTTGTC
CAAAGCAAGTCATAGGCGGTGACCACAGCTGTAATTTTTCTCAGCCTGGT
AGCTAAAAATTTCGTCCTGATTGCTTGGAATTCGCTTTTTAAAAAACAAT
CTCCCTTACCACATCATATTCAAGAAGACTGTGCTGTTGGCACGATTTGG
AAGCAGCATACAGGCTTGTGGGCCGTGGGACTtacctcctctgtctcctt
ttACTTGATACAGTTACGCTTTTCTAAGCACGACGCAGTGTGCGTGCGTA
TAGCAGAAAAGCGTTTTATGCCATCCTTCTTTTGAACGAAGGCTGAAATT
CATCTGAAAATTTGGTCAGGCATAGGGTGGAACGGAGTctgtccttttct
ttttttttccatttaATGTGACGTTAATCATGCTCAAATGCCATTTCAGT
AGATCTCTACCATTACTTTTTCTTATACTCTGTCTCATGATGTGTTTTGC
TGTTTTGAATCAGCCATTCAAACGTCTCGTCATAAGCAGCCAACCGATCC
TGGCAATCCACGATATCATCATTCAGGTCTGACCATGTCAAGTCgcgctc
cttgtcctctttctccttgctccgAACTTCTGTCTCCAGGCTTTTGAGGC
GCTCTAACATGCTATGCATTTGGTCCTCTGATTTTGCCATTTCCCATTTC
TTAGCCCTATTCCACTTTGCTATCTTCCATTTAGCTCCTAAATATGTCTC
GAATTTCCTCCCTAGTATCAAATTTTTTTCTAATAACCACTTGATAGAGA
CTTTATAATTTGTCACCGTTCGAGCGAAGCTAAGTTTCGGCAGCTGTAGC
TGGTACAGGCTCCGCGGATCTACGAGCTCTATTGAATTTCCAAGCTCTTT
ATTGTCAGTCTTCTCTTCTAAAGGTGCGTCCTTCACATGTTGCTTTTTTG
CTCCCATTTGTGTCAGGAACAAGCGAAACCCTTCGTTATATTCAACGTCA
TTCTGTGTTCGATCTTCACCTTCATCCAAGTTTTTCCGAATGACATGCTT
TGACGTTGCATGCTCTTCTACCCAGCCATCCCCACATCTTCCTATCGATG
CGTCCTTATCCTGCTGTAATTTTGCTTGAAAGTCCGCTTAATTGGGACAG
GTTTCATGTTTAACTTCCCCTGTGATATTACCCGTCCGTTGCCGACTACT
TCAATTTTCTTACTTTAaatctcttctccctttttcgtCGAGAGTGTCAG
GAAGACACTTAGTATTTATTCGGTCCTGCCCTAAGCGACCCACATGTTGC
AAATGCTCGATCGCTTTCTGTCGAAGTTGCGCGAGCTTAACGAGGGAGCG
CAGGCGAAATTGTTGATGGCGATGATGATCATACCTATGCGCGCGATTTT
TTTGGTGTTGCTCATCCTCTTTTTGTCTGCTGATACTTGTACAGTCAGTA
CACACTGCTGATACTCGTACAGTTTTCCAGGTATCCCCCTCCAATTTTTT
TTAGCTCGTATCAAATTTCATCCTCTTGTGTTgacgctctcttcctccgc
tctctCGACTTTGATATTCAAGAATCGCATACTTTCTCATCTCGAACTCT
CTTCCGAATGCGTTCGtatcctctacctcctcgtcgtcataTGTATCTTG
CAGTACCGCCCCGATAGCGTTGTACAGCAAAAGGTCTGTGATTTCGTATG
TTATTTGCAGCTTCGTTTTGCTTCTCGCGCCgtttgcctcctcttcgtgg
aCAGCAACCACCCAAGGGATTACGCAGTCGTGCAAAAAACGTGTCCGTTG
AAATTCGGCCACTTCTCGCCTTTTACTTGGTCCTTCGACATTACCGTTCG
TAATGAAACTTATCAACTTATCAGCGCTCATTTTGGCAAGGCCGCTTTGT
CTCTTATCTTTCTCACCGTCTTCTGTAGTCGATAAATGTACAGAAAAGCC
ATCTTCTGGTACAGAAGTAACAGCATTAGAAGGTGGCTGCAAAATAAATG
ATAATGGCAATTCTTTGACGCGTTCGGGGAAGTGTGCAGCGACATTCCGG
CTGTTGGCCTGTAAGGCTTGTTGCGCTCCTTCATAGACACGATGCCAGGC
CAGGCAATGTGGATCAGGCTCAGGAGAGAAAAGATGGGGGAGCGAGTGAA
GCATGAGATAGTGAAAAGTAGGGTTCACGAGatcatcttcatcgtcaCCG
TCATTATTGAGAGTCGTAAGGTGCCCAGatgtggggaggttgggagcAAT
CACGGGTGTGTGAGGGGGCGTAGAATGGGTCGATGTTAGGGAAGAGCACa
tgcaggaggggggagaaaaaggagaacaACGCCTTAAGGATTCGTCATCT
GCAGTGGCCATGGGCAAGTCTAAAAGGAGTATTGCACGTATTTATATGGG
TTGGAAAGTAAGCGTGAGCATTCTATGTCCTCAAAAAATGGGCGCAGCTT
CCTCGCATAAAAAGACGACATTCAAAGAAGCAGGTGGTATAAAAGCGTGT
CAAATCATGTGacaagagaggaaaagagcggcATCAAGCATCGATGGCAA
AGGGGCCGGGCGGTGATGTGCAGGGAAGGCATGGAGGCACtgggtggtgg
ggaaggaagccgcCGACCTCGCTTCAACTTCGGGAACGTACACGAGCACA
TAGCCGGCTCAATTATGTCGTGGCCTCTGGGGGTCTTATTTTTCTGGCTT
GGTGCACCGCACCCATTATTTACGTGTGAAGGGTGCAATGTCCAGAGAAT
GAGAAAAATTTGGCATATGCCTATTCGGGACTCTTTGAGATCAGGGAGGA
GCAACACTCGAAGGATAGTATACGAAGTAACACACAAATCagcaaggaga
aaagagaaaatATTTTTCTACCAGGCGTTTTCCACCACGTCTCTGGTTTA
CTATTGTGATAGTAAGGACGGTCAAATTCCATGACATCTCCTCTATTCCT
ATTTGGGACTAATTATTCTCATCTATACAAAGAAAATCCATCA

Coding sequence (CDS) from alignment at KK037253.1:78692..82184+

>rna9368 ID=rna9368|Name=rna9368|organism=Nannochloropsis gaditana|type=CDS|length=369bp|location=Sequence derived from alignment at KK037253.1:78692..82184+ (Nannochloropsis gaditana)
ATGTGCAGGGAAGGCATGGAGGCACtgggtggtggggaaggaagccgcCG
ACCTCGCTTCAACTTCGGGAACGTACACGAGCACATAGCCGGCTCAATTA
TGTCGTGGCCTCTGGGGGTCTTATTTTTCTGGCTTGGTGCACCGCACCCA
TTATTTACGTGTGAAGGGTGCAATGTCCAGAGAATGAGAAAAATTTGGCA
TATGCCTATTCGGGACTCTTTGAGATCAGGGAGGAGCAACACTCGAAGGA
TAGTATACGAAGTAACACACAAATCagcaaggagaaaagagaaaatATTT
TTCTACCAGGCGTTTTCCACCACGTCTCTGGTTTACTATTGTGATAGTAA
GGACGGTCAAATTCCATGA

Synonyms

Publications