rna936, rna936 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna936
Unique Name	rna936
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	657
Alignment location	CM002456.1:769406..771738 +

Link to JBrowse

Properties


Property Name	Value
Product	exosome component 8
Orig transcript id	gnl\|cribi\|Naga_100022g50.862.mrna
Orig protein id	gnl\|cribi\|Naga_100022g50.862
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:769406..771738 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100022g50	gene899	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna936	rna936-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29763.1	cds936	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:769406..771738+
coding sequence from alignment at CM002456.1:769406..771738+

mRNA sequence

>rna936 ID=rna936|Name=rna936|organism=Nannochloropsis gaditana|type=mRNA|length=657bp
ATGAAACCAGATGATGAATATAAAGATGTGGAGTACTGGAATGCGCGTTT
TTTGCAGGAAGAATCATACGATTGGCTCGTCGCGTTTGAAGACATTGAGT
GTTTATTGAGGAAATACGTACCTATCGACCGTCCACTTCGCATTCTTCAC
ATTGGATGCGGCAATTCGACGCTTTCGATACAGCTGAAACATTTTCTACA
TCCTGAAAGCTATATTTGCAACCAAGACTTTTCCGAGGTGCTGATAAATA
AGATGAGAGCTACTTACGGAGAAGAAACAGGCAGGTTTGAGTGGATGGTG
GGAGACATGACAGATTTGGCTAGCTCTGCTTTCCCTCCGGCTTCATTTGA
CATTGTCATAGAAAAAGCAGCTCTAGATGCCTTGACAGTGCATACAGGTG
ATCCATGGAATCCTAGAGAGGAAGTAAGGGAGGACGTGGCAAAGGTGATG
CGAGGCGTGGCCATGCTCTTACGGAATGATTGCGAAAGCCTTTTTTTGAG
CATTTCATTCCACCAAAAGCACTTTCGCCTGAAATTATTGGATGACATGG
AAATCAACTTTCAGATCACAGTTCAGGATATCCCCCACACCAAATCTTTG
CCTCATTTCTTGTACATTTGCGAGAAAAAAAAACACCAGGGTACATCAGC
TAATTAA

protein sequence of rna936

>rna936-protein ID=rna936-protein|Name=rna936|organism=Nannochloropsis gaditana|type=polypeptide|length=296bp
MSCHAHEHGYSMVRLDFFILTGNHRVSMADTPSRGAVEEMISFYSRFDPA
TYLSDLESACRRQDGRSHKQLRPLKLLQGILQKSTAGSSLAKIGETKVLA
GVSLQVGQPGEDSPEKGEIGVEVNLLPLCHPKFSSIQAQQEESKALENFV
QSVLLRCNVVRREDLCIVEGRHVWKLNVDLQCLSHDGSLADACVLSALLA
LADVTLPVTIVGTDEKVVILHGFHADMLLGDLSLAEEEKIPTRLRIAVDC
ETGQLCTLQKLGGVSMASEHLDSAVALCGARQKQFLLERDLRQDKS

mRNA from alignment at CM002456.1:769406..771738+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna936 ID=rna936|Name=rna936|organism=Nannochloropsis gaditana|type=mRNA|length=2333bp|location=Sequence derived from alignment at CM002456.1:769406..771738+ (Nannochloropsis gaditana)
ACTGCACATACCCTTCAGGAGGATTTTGAGCTCTCGTGACTTCCACTGAG
GAGGCCACGTCCGGAgtgccctcttttcttctttaaATTGCTTACACAAT
AGGCACATTTCTCTAAAAAAGACTGATTGTGGCTGGCACGTGAGTTGGGG
CAGATCTCCTCAGTTCGATTTCAGCACGTGTTCGCAGCCACTTCCTTGCT
GATAGCATTTCTCGCCCCTGGAAAGTAACCTGTCCCGCTAACCATTGCCT
TTCgcctttcattttttttggggggtaAAAACTGGTCCTAGATTTGTTGG
CTGAAAGGATCATGTGATGTCTTTGATGCCTACGTTCCTATATGAGCTGT
CATGCGCACGAGCATGGTTATTCCATGGTGAGACTTGATTTTTTCATTTT
GACAGGCAATCACAGAGTTTCTATGGCAGACACTCCTAGCCGTGGAGCAG
TCGAGGAGATGATCAGCTTTTATTCACGGTTTGACCCGGCGACATACCTG
TCCGACCTGGAGAGTGCTTGCAGACGTCAAGATGGCCGCAGTCACAAGCA
GCTAAGGCCACTCAAGCTGCTCCAGGGAATCTTACAAAAGAGCACTGCGG
GTTCATCCCTGGCGAAGATTGGTGAAACGAAGGTGTTAGCGGGGGTGAGC
TTGCAGGTGGGCCAACCAGGTGAAGATTCTCCTGAAAAAGGAGAGATAGG
TGAGTTTGGAACGCGTATGACTAAATAATTACCAATTTGTTTTCAAATTT
GAGGgagtggaaaagaaagataTTTTGTTTCGCTAGCAACCGAATTCTAT
CGTTCATCTTCATCACCCATTttatcttttttttcttactGGCCAGGCGT
AGAAGTTAATTTATTGCCACTGTGCCATCCCAAGTTCTCCTCGATCCAGG
CGCAGCAAGAGGAAAGCAAGGCACTGGAAAACTTTGTGCAAAGCGTCTTA
TTGAGGTAGGCCCCGGAGGCTGGGTGAAACAGAAAACAGAATACAAAAGA
ACCTGCTGACAAATGTTTGAGAGGGACTCATGATTTTTGGAGGCTAAATG
AAGTGCATTTCCTATAGGTGCAATGTTGTACGGCGCGAGGACCTCTGCAT
CGTAGAAGGCCGCCATGTATGGAAGTTGAATGTTGATTTACAGTGCCTCA
GCCATGATGGAAGCTTGGCAGACGCCTGCGTCCTGTCGGCCCTGTTAGCT
CTTGCTGACGTCACGCTACCTGTCACCATCGTCGGCACGGACGAGAAAGT
TGTCATCTTGCATGGTAAGGTTTCATAAATTTCTGAATCGTCGGCGGGTT
TCATCATTGTCTGTTTCGTACCATTTTCAGTCTTTTCAAGAAATTTTATT
TCAAGACACTTTCCAAAATTGCCCTCATTTCGCTTCAGACCGTCCGCCCC
GGCGCTTGGAAATGGCGCgttttcccatccccttgACTGTAGGTTTTCAT
GCGGACATGCTCCTTGGCGATTTGTCCttggctgaggaggagaaaattcC
GACACGTTTGAGAATTGCCGTAGATTGTGAGACAGGGCAGTTGTGCACGT
TACAGAAGCTTGGAGGTGTATCCATGGCCTCCGAGCACTTAGACAGCGCA
GTGGCTTTGTGCGGTGCTCGACAAAAACAATTTCTCCTCGAGCGGGATCT
GCGACAAGACAAATCGTGACGCGAAATAACATGACATGTACAAAGGCGAA
GCTCAGAGGAGAGTCTTCGAGAAATCATCATACAGAATGACTTACAACAA
TTTTTTTTAAGCAGCGCTTCAATATTCTTTAGATTCGAGACACTGCTGTA
TTGTTTCCACTAGACAAACAGTAGTGCGTTGATATGCTCGTGCTTGCTCC
TTCCTGCAACGACTCATAGGCCGAAGAAAGGGTCATTTTGAGATCCTGGT
GGCCGTAAGGGAAAGGCTGTGCCTTGTTGTTGGTACGAAGCGTGATGAGC
TTGCGGATGGTGCTGTTGGTGCTGTTGTACAAAAGAAGTCTGCATCTGGA
CCGGCATCTGGACGTTCGAGTTCAGCGAGGTCATTGCCTGTCCTGGAAAT
GACATTTGCTGAGGCGGCAAGTACATACCACTACCGCCGCTCATACTGGT
GGTGGCTGTATTCGGAACGCCACGCCTTTGTTGATATGTGAATTGTTGCT
GTAAatactttcctcctcccatcattGCTGGCCCTGTCGGTGTTTCAACG
GGTTGCTGCCACGGCTGCGGCGTCCCACCCATCatgtgctgctgctgcat
aGGCGAAGAAAGCATCCCTCGACCGGGAAAAAACGGTTGAGCGCCCGGCG
ACGTCATGATCTCCGGAGGGGGCGTGCGATCGA

Coding sequence (CDS) from alignment at CM002456.1:769406..771738+

>rna936 ID=rna936|Name=rna936|organism=Nannochloropsis gaditana|type=CDS|length=3564bp|location=Sequence derived from alignment at CM002456.1:769406..771738+ (Nannochloropsis gaditana)
ATGAGCTGTCATGCGCACGAGCATGGTTATTCCATGGTGAGACTTGATTT
TTTCATTTTGACAGGCAATCACAGAGTTTCTATGGCAGACACTCCTAGCC
GTGGAGCAGTCGAGGAGATGATCAGCTTTTATTCACGGTTTGACCCGGCG
ACATACCTGTCCGACCTGGAGAGTGCTTGCAGACGTCAAGATGGCCGCAG
TCACAAGCAGCTAAGGCCACTCAAGCTGCTCCAGGGAATCTTACAAAAGA
GCACTGCGGGTTCATCCCTGGCGAAGATTGGTGAAACGAAGGTGTTAGCG
GGGGTGAGCTTGCAGGTGGGCCAACCAGGTGAAGATTCTCCTGAAAAAGG
AGAGATAGGCGTAGAAGTTAATTTATTGCCACTGTGCCATCCCAAGTTCT
CCTCGATCCAGGCGCAGCAAGAGGAAAGCAAGGCACTGGAAAACTTTGTG
CAAAGCGTCTTATTGAGGTGCAATGTTGTACGGCGCGAGGACCTCTGCAT
CGTAGAAGGCCGCCATGTATGGAAGTTGAATGTTGATTTACAGTGCCTCA
GCCATGATGGAAGCTTGGCAGACGCCTGCGTCCTGTCGGCCCTGTTAGCT
CTTGCTGACGTCACGCTACCTGTCACCATCGTCGGCACGGACGAGAAAGT
TGTCATCTTGCATGGTTTTCATGCGGACATGCTCCTTGGCGATTTGTCCt
tggctgaggaggagaaaattcCGACACGTTTGAGAATTGCCGTAGATTGT
GAGACAGGGCAGTTGTGCACGTTACAGAAGCTTGGAGGTGTATCCATGGC
CTCCGAGCACTTAGACAGCGCAGTGGCTTTGTGCGGTGCTCGACAAAAAC
AATTTCTCCTCGAGCGGGATCTGCGACAAGACAAATCGTGAATGAGCTGT
CATGCGCACGAGCATGGTTATTCCATGGTGAGACTTGATTTTTTCATTTT
GACAGGCAATCACAGAGTTTCTATGGCAGACACTCCTAGCCGTGGAGCAG
TCGAGGAGATGATCAGCTTTTATTCACGGTTTGACCCGGCGACATACCTG
TCCGACCTGGAGAGTGCTTGCAGACGTCAAGATGGCCGCAGTCACAAGCA
GCTAAGGCCACTCAAGCTGCTCCAGGGAATCTTACAAAAGAGCACTGCGG
GTTCATCCCTGGCGAAGATTGGTGAAACGAAGGTGTTAGCGGGGGTGAGC
TTGCAGGTGGGCCAACCAGGTGAAGATTCTCCTGAAAAAGGAGAGATAGG
CGTAGAAGTTAATTTATTGCCACTGTGCCATCCCAAGTTCTCCTCGATCC
AGGCGCAGCAAGAGGAAAGCAAGGCACTGGAAAACTTTGTGCAAAGCGTC
TTATTGAGGTGCAATGTTGTACGGCGCGAGGACCTCTGCATCGTAGAAGG
CCGCCATGTATGGAAGTTGAATGTTGATTTACAGTGCCTCAGCCATGATG
GAAGCTTGGCAGACGCCTGCGTCCTGTCGGCCCTGTTAGCTCTTGCTGAC
GTCACGCTACCTGTCACCATCGTCGGCACGGACGAGAAAGTTGTCATCTT
GCATGGTTTTCATGCGGACATGCTCCTTGGCGATTTGTCCttggctgagg
aggagaaaattcCGACACGTTTGAGAATTGCCGTAGATTGTGAGACAGGG
CAGTTGTGCACGTTACAGAAGCTTGGAGGTGTATCCATGGCCTCCGAGCA
CTTAGACAGCGCAGTGGCTTTGTGCGGTGCTCGACAAAAACAATTTCTCC
TCGAGCGGGATCTGCGACAAGACAAATCGTGAATGAGCTGTCATGCGCAC
GAGCATGGTTATTCCATGGTGAGACTTGATTTTTTCATTTTGACAGGCAA
TCACAGAGTTTCTATGGCAGACACTCCTAGCCGTGGAGCAGTCGAGGAGA
TGATCAGCTTTTATTCACGGTTTGACCCGGCGACATACCTGTCCGACCTG
GAGAGTGCTTGCAGACGTCAAGATGGCCGCAGTCACAAGCAGCTAAGGCC
ACTCAAGCTGCTCCAGGGAATCTTACAAAAGAGCACTGCGGGTTCATCCC
TGGCGAAGATTGGTGAAACGAAGGTGTTAGCGGGGGTGAGCTTGCAGGTG
GGCCAACCAGGTGAAGATTCTCCTGAAAAAGGAGAGATAGGCGTAGAAGT
TAATTTATTGCCACTGTGCCATCCCAAGTTCTCCTCGATCCAGGCGCAGC
AAGAGGAAAGCAAGGCACTGGAAAACTTTGTGCAAAGCGTCTTATTGAGG
TGCAATGTTGTACGGCGCGAGGACCTCTGCATCGTAGAAGGCCGCCATGT
ATGGAAGTTGAATGTTGATTTACAGTGCCTCAGCCATGATGGAAGCTTGG
CAGACGCCTGCGTCCTGTCGGCCCTGTTAGCTCTTGCTGACGTCACGCTA
CCTGTCACCATCGTCGGCACGGACGAGAAAGTTGTCATCTTGCATGGTTT
TCATGCGGACATGCTCCTTGGCGATTTGTCCttggctgaggaggagaaaa
ttcCGACACGTTTGAGAATTGCCGTAGATTGTGAGACAGGGCAGTTGTGC
ACGTTACAGAAGCTTGGAGGTGTATCCATGGCCTCCGAGCACTTAGACAG
CGCAGTGGCTTTGTGCGGTGCTCGACAAAAACAATTTCTCCTCGAGCGGG
ATCTGCGACAAGACAAATCGTGAATGAGCTGTCATGCGCACGAGCATGGT
TATTCCATGGTGAGACTTGATTTTTTCATTTTGACAGGCAATCACAGAGT
TTCTATGGCAGACACTCCTAGCCGTGGAGCAGTCGAGGAGATGATCAGCT
TTTATTCACGGTTTGACCCGGCGACATACCTGTCCGACCTGGAGAGTGCT
TGCAGACGTCAAGATGGCCGCAGTCACAAGCAGCTAAGGCCACTCAAGCT
GCTCCAGGGAATCTTACAAAAGAGCACTGCGGGTTCATCCCTGGCGAAGA
TTGGTGAAACGAAGGTGTTAGCGGGGGTGAGCTTGCAGGTGGGCCAACCA
GGTGAAGATTCTCCTGAAAAAGGAGAGATAGGCGTAGAAGTTAATTTATT
GCCACTGTGCCATCCCAAGTTCTCCTCGATCCAGGCGCAGCAAGAGGAAA
GCAAGGCACTGGAAAACTTTGTGCAAAGCGTCTTATTGAGGTGCAATGTT
GTACGGCGCGAGGACCTCTGCATCGTAGAAGGCCGCCATGTATGGAAGTT
GAATGTTGATTTACAGTGCCTCAGCCATGATGGAAGCTTGGCAGACGCCT
GCGTCCTGTCGGCCCTGTTAGCTCTTGCTGACGTCACGCTACCTGTCACC
ATCGTCGGCACGGACGAGAAAGTTGTCATCTTGCATGGTTTTCATGCGGA
CATGCTCCTTGGCGATTTGTCCttggctgaggaggagaaaattcCGACAC
GTTTGAGAATTGCCGTAGATTGTGAGACAGGGCAGTTGTGCACGTTACAG
AAGCTTGGAGGTGTATCCATGGCCTCCGAGCACTTAGACAGCGCAGTGGC
TTTGTGCGGTGCTCGACAAAAACAATTTCTCCTCGAGCGGGATCTGCGAC
AAGACAAATCGTGA

Synonyms

Publications