rna9353, rna9353 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9353
Unique Name	rna9353
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	999
Alignment location	KK037253.1:44925..47556 +

Link to JBrowse

Properties


Property Name	Value
Product	1-aminocyclopropane-1-carboxylate deaminase
Orig transcript id	gnl\|cribi\|Naga_100075g23.2884.mrna
Orig protein id	gnl\|cribi\|Naga_100075g23.2884
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:44925..47556 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100075g23	gene9070	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9353	rna9353-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21350.1	cds9323	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:44925..47556+
coding sequence from alignment at KK037253.1:44925..47556+

mRNA sequence

>rna9353 ID=rna9353|Name=rna9353|organism=Nannochloropsis gaditana|type=mRNA|length=999bp
ATGAGTCAGAGACACACGTCCTGCGCACCGACGCCCTCGAGAATCAAAAG
GCACGGGTTATGCATGGGCCGAATCCTTTGCATGCTTCTATTCTTTTTTC
CAGTCATAACTGTTGCCGTATCCCGTCCGGGTCAGGAATACCCGAGAGGG
AGTTCCTTCAATTTGGGCCTCATTGACGACAACGCAAACGATGGTGCGAA
CGCCGGCCTCGGGGCGGGAGGCGTCGACTTCCTTGGCGGGCTGTCGACAG
GGACAACGATGGTGGCAGCCAAGTACAAAGACGGAGTAGTGGTTGGGGCA
GACTCCCGCTCAGTGAAGAACGGTCGCTACGTGGCAGACCGCTTCACAGA
CAAGGTGCAGCAAGTCAGCGAATACGTTGTACTGGTCTGTTCAGGACGCA
CGGCCGTTGTGCAACGTCTCAACCAGGAAATCGCGGCGCGACTGCGGTTC
TATCAAATTCAACATCAACGGTTGCCCACGAGCCGGCACGCTGCTGCTGT
TCTCCGCATCCTCATGCGGATGGGACTAGAACCTGTGGAGGAAAAGCAGC
AGCGAAACGACAAAACTCAAGTAACAATGGACACTGATGCACTGGCGGCG
GGATGGAGTCCAAGGGAGGGTCCGCGCATTCATCAGGTGCTGACAGGGGG
CACAGTGCTTGAGGCACGAGATTACGCCGTGGCCGGGCACGGGGCTGACT
ACATCGTAGGCTTTATGGACGCGCACTACCCCCAAGTAGAGGAAGCAGGC
AAAGCATTGGCGCATGCAGGGATGTCCAAGGAGGACTGCGAAGAAATTGT
GAGACGCGCCATGGCCCTGGCCGTGGGACGAGACACGCAGTCGGGCGAGG
GCGTGACGATAGCGGTCGTGAACCCGCAGGGGACTACGAAGAGGGTGCTT
TCCACGGCCGAGCTCCAAAGGAGCCTCAAAAAAGCCTTGAGCGTTGTTCA
AGCGACGGAAAATAGGAAGGAGAAGGAACGCGAGGGTGCTACACCATAG

protein sequence of rna9353

>rna9353-protein ID=rna9353-protein|Name=rna9353|organism=Nannochloropsis gaditana|type=polypeptide|length=448bp
MRTSCTSVGVNMCVSLVTAFHARPGASHRFQRVSLSNLHIPLPLASAALI
ERATLPSYLHSSPVEEIHGIFDDHLKVYVKRDDKLDLLGAGIHGNKARKL
WGLASSYPLSSSRPFPAVCLSWGGIQSNALAALAGFVCGVQQKRLIYYTK
TIPAWLKDHPVGNYRRALELGVDFRELRASEFQDIFGATDETEGGDGEAR
CIRLKKRLVEREGDLLAREADDLLLVPQGAAFPGAEEGIDRLGREVEDWW
ATESGSGERAEVKPLAVVLPAGTGTTAFYLARTLASSSLGRTPVVYAVPC
VGDGTYLRAQMARLTRSEALSETPARPEGRGVLGGRKGGKPGADHGSEGW
REKAPQGAFPEVLEGSAPHVFGQPGQALIDMWHEMGEKHGLELDLLYGPR
AWCVIRQHWSVLRAKHDKLLYIHTGGMEGLPSQLARYRYRKMLPDPGE

mRNA from alignment at KK037253.1:44925..47556+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9353 ID=rna9353|Name=rna9353|organism=Nannochloropsis gaditana|type=mRNA|length=2632bp|location=Sequence derived from alignment at KK037253.1:44925..47556+ (Nannochloropsis gaditana)
AGTTGGGGTTCTTCAACCTTTTAcggggccaggaggttggACATGATTAT
TCAAGGATAACAAAGAATGCTGCAAGGGAAATTTAACAGAGAAACGAAAA
GTTATACAAAGGTTTGGGCTTCACAATGCCGTAGGTTATCTTCTTGAAGC
AAACTGACACGCTCGTCTAACGTCAGCTCCCAAACAAAAACAGAGGGAAG
CTGCCCGCATTGGCAGGGATGCTCAATCAAAGAATGATGGAAGGTCATCC
ACGCCCCCAGGGCACAAATTGAAAGTATAGAGACAAGCCTTAAAAACTGG
CACACACTTTGTCAGGCAGGTGGTCTTACTCGCGGTGATTCTTCTATACA
AAAGTGTACAGCCTCCTATCGAAAGCTACATATTCTGTTGTTCCTCCCGT
GACGACTTATCGTGCGCTTAGGAACCTATTTGGAAAACCATTCAAGTCGC
cttcaggaaaaaaatgcgtACTTCTTGCACTTCAGTCGGGGTGAACATGT
GTGTAAGCCTCGTAACTGCATTCCACGCCCGACCTGGCGCTTCACACCGC
TTCCAACGAGTGAGTCTCAGCAACCTTcacattcctcttcctctggcAAG
CGCTGCACTCATAGAAAGGGCGACCCTACCTTCTTATCTCCACTCCTCTC
CTGTTGAAGAGATTCATGGTATTTTCGACGACCACTTGAAAGTTTACGTG
AAAAGAGACGACAAGTTGGACCTCCTGGGTGCCGGAATTCACGGCAATAA
GGCTCGGAAGCTCTGGGGCCTGGCATCTTCATACCCTTtgtcttcttctc
gccctttccccgctGTCTGTCTCAGCTGGGGGGGGATCCAAAGCAATGCC
CTGGCCGCGCTCGCGGGCTTCGTGTGCGGCGTACAGCAGAAGCGACTCAT
CTACTACACAAAGACGATCCCTGCGTGGTTGAAAGACCATCCAGTGGGGA
ACTACAGGCGTGCTCTGGAGCTGGGTGTGGATTTTCGCGAGCTCCGTGCT
TCAGAGTTCCAGGACATTTTTGGGGCAACAGATGAgaccgaaggagggga
cggcgaGGCCAGGTGCATACGTCTGAAGAAGAGGCTTgtagagagagaag
gggaccTGCTTGCGCGTGAAGCCGACGATCTGCTCCTCGTGCCGCAAGGG
GCTGCCTTCCCAggagccgaggaagggatcgaTCGCCTGGGCCGGGAAGT
GGAGGACTGGTGGGCGACGGAGAGCGGGTCCGGCGAGAGGGCCGAGGTAA
AGCCGCTGGCTGTGGTCCTCCCGGCTGGGACGGGCACGACGGCTTTCTAC
CTGGCGAGGACCCTGGCCAGCTCCTCTCTGGGGAGAACTCCGGTAGTGTA
TGCGGTGCCCTGTGTCGGGGACGGCACCTACCTACGGGCGCAAATGGCTC
GTCTCACCCGCAGCGAGGCGCTTTCCGAAACACCCGCTCGGCccgagggg
cggggggtgctaggggggaggaaaggagggaagccagGCGCGGACCACGG
ATcggaagggtggagggagaaggcgccaCAGGGGGCCTTTCCCGAGGTCT
TGGAGGGCTCCGCGCCTCACGTGTTCGGCCAACCCGGGCAGGCGCTGATC
GACATGTGGCATGAGATGGGAGAAAAGCATGGGCTGGAGCTGGACCTGCT
CTACGGACCTCGCGCCTGGTGCGTGATCAGGCAGCACTGGTCGGTCCTAA
GGGCCAAGCACGACAAGCTCCTGTACATACACACcgggggcatggagggc
cTGCCCAGCCAGCTGGCAAGGTATCGATACCGAAAGATGCTACCAGACCC
CGGCGAGTAATTTACGTGAAGAAATACGGTGCGAACAAGTGAGACTTGAG
ATAccagcttcttcttccagaaTTGTTTCTAGCCTCTGCTCTTCCGTCGT
TGCCGTGCACGCTTCTACAGCCTAAATTAAGACCGGCCGGAGTTGagcct
cccccgcgtccttcaCATCCCCTACATTCACCACGCCGCCGATCCCCAGC
GGGTCTACTTTTCgcatctccacctccttgaatGTAAGCTGGCCTTCAGA
AAGCGACACCGCTCCGTCTTGTCGCACGTGGTTAAAACGAAAGTTCAAAC
GATTGCCGGGAATACCGGTCCCGCCAAAGACAGGTCGgagctctttcctc
ctctctccctcctcatccacttCTGTCAAGCAGTCATCGAGCACCGGCAG
AGAAAAATAGAGATACGGGAATAGAGGTTCGTCGAAAAGCCCCCAGATCC
ACAGACCCCATTGCCTGTCATTCTTGTCTTCGCTCAGTGTCCATGCCGGA
GCAGGTCCCAAGGCGAAGCCTTTCTCATCCGTATCGATAAGTGCCAGCGG
GTCTCGCTCTACAAAGATTCGGCCTTGAGGAGGCTCGTAACCAGGTTCTG
TCACGAAGCGTATTCGAAAATCTGCCTGAATATCAGAGTAGCCCTCTTTC
TTAATAACGACGCTCAGGTCCCAAGGGACGTTCGAGGAAAGACTGGCTTT
TTTACTTGCgccagtggaggagggggaggttgtagtaggcggcggaggag
atgatgTGGAAGCCAGCGGGGCGAGGACTGAGGATTTTGAGAGCCTCACA
ACAAAAGCATGCGCGAAAGTCAAGGCCTGGAA

Coding sequence (CDS) from alignment at KK037253.1:44925..47556+

>rna9353 ID=rna9353|Name=rna9353|organism=Nannochloropsis gaditana|type=CDS|length=1347bp|location=Sequence derived from alignment at KK037253.1:44925..47556+ (Nannochloropsis gaditana)
atgcgtACTTCTTGCACTTCAGTCGGGGTGAACATGTGTGTAAGCCTCGT
AACTGCATTCCACGCCCGACCTGGCGCTTCACACCGCTTCCAACGAGTGA
GTCTCAGCAACCTTcacattcctcttcctctggcAAGCGCTGCACTCATA
GAAAGGGCGACCCTACCTTCTTATCTCCACTCCTCTCCTGTTGAAGAGAT
TCATGGTATTTTCGACGACCACTTGAAAGTTTACGTGAAAAGAGACGACA
AGTTGGACCTCCTGGGTGCCGGAATTCACGGCAATAAGGCTCGGAAGCTC
TGGGGCCTGGCATCTTCATACCCTTtgtcttcttctcgccctttccccgc
tGTCTGTCTCAGCTGGGGGGGGATCCAAAGCAATGCCCTGGCCGCGCTCG
CGGGCTTCGTGTGCGGCGTACAGCAGAAGCGACTCATCTACTACACAAAG
ACGATCCCTGCGTGGTTGAAAGACCATCCAGTGGGGAACTACAGGCGTGC
TCTGGAGCTGGGTGTGGATTTTCGCGAGCTCCGTGCTTCAGAGTTCCAGG
ACATTTTTGGGGCAACAGATGAgaccgaaggaggggacggcgaGGCCAGG
TGCATACGTCTGAAGAAGAGGCTTgtagagagagaaggggaccTGCTTGC
GCGTGAAGCCGACGATCTGCTCCTCGTGCCGCAAGGGGCTGCCTTCCCAg
gagccgaggaagggatcgaTCGCCTGGGCCGGGAAGTGGAGGACTGGTGG
GCGACGGAGAGCGGGTCCGGCGAGAGGGCCGAGGTAAAGCCGCTGGCTGT
GGTCCTCCCGGCTGGGACGGGCACGACGGCTTTCTACCTGGCGAGGACCC
TGGCCAGCTCCTCTCTGGGGAGAACTCCGGTAGTGTATGCGGTGCCCTGT
GTCGGGGACGGCACCTACCTACGGGCGCAAATGGCTCGTCTCACCCGCAG
CGAGGCGCTTTCCGAAACACCCGCTCGGCccgaggggcggggggtgctag
gggggaggaaaggagggaagccagGCGCGGACCACGGATcggaagggtgg
agggagaaggcgccaCAGGGGGCCTTTCCCGAGGTCTTGGAGGGCTCCGC
GCCTCACGTGTTCGGCCAACCCGGGCAGGCGCTGATCGACATGTGGCATG
AGATGGGAGAAAAGCATGGGCTGGAGCTGGACCTGCTCTACGGACCTCGC
GCCTGGTGCGTGATCAGGCAGCACTGGTCGGTCCTAAGGGCCAAGCACGA
CAAGCTCCTGTACATACACACcgggggcatggagggccTGCCCAGCCAGC
TGGCAAGGTATCGATACCGAAAGATGCTACCAGACCCCGGCGAGTAA

Synonyms

Publications