rna935, rna935 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna935
Unique Name	rna935
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4833
Alignment location	CM002456.1:767822..768478 -

Link to JBrowse

Properties


Property Name	Value
Product	endothelin-converting enzyme 2
Orig transcript id	gnl\|cribi\|Naga_100022g49.857.mrna
Orig protein id	gnl\|cribi\|Naga_100022g49.857
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:767822..768478 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100022g49	gene898	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29758.1	cds935	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna935	rna935-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:767822..768478-
coding sequence from alignment at CM002456.1:767822..768478-

mRNA sequence

>rna935 ID=rna935|Name=rna935|organism=Nannochloropsis gaditana|type=mRNA|length=4833bp
CCCCCCAACAGAACTTATGGTCGTAAGTGAATTGCCAGGGCAGGTTTGAT
AGTGCAGGCAGCTCGACGAAACCCTCAGAGATGAGGATGGGAAGGGAGAA
GCGGGTTGGGGGGCCGAATCAGCCGTCTTTGGCCATTTTTTTTGGAAAAA
AGCCAGGCCGCAAGAAACACGAGACGAGTCAAGAAAGAGTGAGGGATAGC
AATGCCGAAGTTTTCGAGGTGTGCCCTTCACGCGAGAGGATAGGGACTCG
GGTTCCTCGATGGCGCAATCGGTGCATGACCCTTGTAGAGCGGTTGCTTG
AGGAGGATGAGGAGGGATGGTTCGCGGGCCCGGTCAACGCCGAGCAGCTT
GGGCTGGACGATTATTTCCGGATCGTCACAGAACCTATGGATCTAGGTAC
GATCAAGGCTAACTTGAAGGAGAAGGCCTACGTGTCACCGGAAGCCTTTG
CTCGGGACGTCTGGCTGGTCTTCGATAATGCTCGCCGGTACAACGAGAGC
CCCGACCATCCCGTGCATCAATTGGCGGTGGCGCTGGCATGCAGCTTTGG
GCGTGCATTCAACGCCCTTTTTCCTAGGTCTGGTAGGTCCCGAGAAGAAG
GAGGTTCACCGTCGAGGGCGACGCCAGTGCCTCGACGTGGAGGGCTTGCA
GAGGGTCCAGAAAGGGACGGAGAGGGTCTCGAAGAGAGCGACGTAGAGAT
TCTGCCAGCCTCCGGAGCAGGGTGGTCTACAAAAAAGCCCTGTGAAATTG
ATCCACCTGTAAGTGTCGGAGCTTCTATCGGGGAGAAATTGCATCCTTTT
TTTGCAAAGCGGACTCATAACCTTAGTCAGAGAGAGAATTTTACGACGAG
TCTTACCGCAGTATCGACCAAAGCAAGCATTACATCTGCTCTAGAAAGTG
ATCTGCCAAGAACTGATGCGGCCGGCAGAAGCGCTACCGGCAAAGGAATG
TTGTCGGGGTCTCGGCCCACTGAGGAGACTTCTTGCGAGGAGAGTGGCGC
TACAAGGAGCAGTCAAGGACGCCGAGAGATGTCTGATGAGGAGCTTCTTG
CAGCCAACGATTACTTTTTAAGCCAAGCGCTTAGCAAGCGTAAAGCGTCA
CTTCTCCGCGCCCACGCCGAGGAGGTGGAGAGGCGTATGCGCCGGGAATG
GCTGGAGAGCTTGAACAACGGTAGAGAGATGCATCCCTTCTTTGAGAAAG
CCAGAGCTGGAAGCAGCGGGCGTTCTGAGCTTCGACGGAGCGAAGGCTGT
ATATCAATGCAGGATGAAAGGGCTTGGACTTGCCCGTTGTTTCCGGAAGT
GACTCACGTCCATCAGGAGGACGACACAGAGCAGCAGAACGCCCAAGTGC
CTGCAGACACCATTTGCCTAGGAGAACTCTTAATACCGAAGCTGGGCGCA
ATGCCCGCGTTTTTCGGTCGTGACGCTGGCTCGCTTCCTTTACATGCATC
TCGTTGTCTAGTTTCCGAAGTCACGAAGACTCCAGAGGAGAATAGGCCCT
CGGACGCGGGGGAAGCCGAGGGAGCCTCGCGAGGCATTATGCTGAGAAAA
GCAGATTTGAATGAACGGGGTCGCAGCATGCTGCTCCCTGTCAGCAATAG
CAATGCTCAGCATGGTGCAGCTGAAAGTGAACAGACGGTGCACTCCCTAG
CCTCATCCGCAGAGATCGACGCTAAGGTCATCAGACGTCATTTGAAGTGG
ATGAAGAGGCAGCGAGAGCGAGGGTCGTCAGGCGTGGCAGCCCAGTGGGT
GGATAGGTATCGGCCCGACGAGCCTGATGCGTTGGTGTGGCCTTTGCGGC
AGGCGGCTCTCTCGCTGCAGCAGTGGTTGGAGGACTGGCAAGAGTGGCGG
CTGACAGGCTCGCGCGGTCATTCAACAAAGCAGAAGCGAAAGAAGCGTTT
GCATGAGCGTTCGAAGCGTGACGCGGGAGATATAGATGAGGGCGAATGGA
ACGATGGTGAGCCGCGCACCACGACGCTCGTATGTGGCCCTTCCGGGATA
GGAAAGTCGGCGGTTGTTTATGCGACAGCGGCAAGGCTTGGCTTCGAGGT
CATTGAGGTCAACACCAGCCAACTCCGGTCGGGTGTCGAAATCAAGAAAC
TCTTCAGCGAGGCCACGCAGTCACAGCATATAAGGCAAGCTTCTAGTGTT
TGTACATTCGATCAGACGACGCCAGCGGAGCAGCTTTGGCTCACGAAATC
AAGTAAGGGCGCGAATGGGCCCCAAAAAAGGAAAGGCGCGAAACAGAAGG
ATGAAGACGAGGTTGTCTGGCTCGAACAACCGATCCCGCGGAGCAGATCC
GCGAACCGTATGACCCTCATCCTCATCGAAGAGGTGGATTTGGTTTTTGA
AGAGGATGTAGGGTTCCATAGAGCGCTGCGCGAATTCATGTCTTCTGCGA
AATGGCCTTTGGTGCTCACTGCCAACCATCCGCCGGACTGGCTATCAGAG
ATGGAATGCTGCCGTACAAGGACAGTCCTACCCTGTCCCACTGTCACATT
GGCCCTCATGCTAAGCATGATTTGGGCAACAGAGGGCTTGCCGGGTTTAC
CTCCAGAACATTTTTGTGCCCTTGCGTGCTCCTCCCGAGGAGATGTTCGC
TCAGCTATCATGAGCCTGCAGATGTGGTCTTTCGACTTCTCACCGAATAG
ACAAGGGAACACTGGGCACCAAGGAGCACCATACCGATCCGGAGCTTCAG
CCCTATCCCTGTTGCAGACGGGAAAGAATGTAGATTTCCGTAAGGCTTTA
AAGGATCAAATGCTAGAGCAGAAACGGCTACAGAGTCGGACGCACGCAGA
TTGTAACCAGTCTCTTCCAGAGAAGCACTCGATTTTCGGTTACCATCGTC
CGGTTGTGGACTGTGTGCACCCTCTGTGTGGGAGCCATGTCGGGGGCACG
CGCATCACTATCCGCGGCCGACATTTCTTGCAGGCGAGCGACGAATCTGC
CGGGGCCTGGGCTCCTGTGGACGTTCGTCTCGGGTCCCTGGCCTGCCTGC
ACGTAAAGGTGCTGTCCGACACGGAGATAACGGCCGTCACGCCGGCGCTC
CCCCGCTCCTTGTATCCTGGCCAGCTTCCTGTCATTGTGACTATCTGTCG
CTTGGTAAACAGTGCGAACACCTGGCAGCTGGCTTGCAGGGCTTGTTTTC
GATTCCAAAGTGAGCGTCGCCCTGAGGACAGAAATTTTCCAGATCTCAAG
TTGCCCGGCCATCATCTAAAGCGATGGAGATCGACAAGAGATGAGACGCC
AACCAAGCAGTTGCAAATGAAAGGAAAGCATGTACGAGAGAAAATTCAGG
TCGAGACGAATGTAGAAGGAGAAGAGCAGTATCAAGTGAACGCTGACGAT
CAAAGCGAAAATTATGAGGGTCAAGTCAAACGTCGAAGAGTGGTACTTGA
AAGTGAGAGCGAGGACGAAGAGGTAGAGAGAAGATATGTGCAGAACGACT
TGCCCTCCTCAAGTCCTGATGCGGTGGTCACGGATGAAGTTCTAGATGAC
AAGGAGCGAGGCACAGCGACATGCGAAACAGATATTCTGTCGCACACTGA
TATCAGGTCGCAGGCCCAGGCAGTGATTGCCAAAAGAGAGGGCCCGATCT
CTTACACGAGGGACGAAAGAGGGGATATGGAGGAGATTTCGAAGGAAATT
GACAGGATCAAAGTTGAGAATGAGAAGTTGACTGAGCAGCTCGATGTTGT
GAGAGCAGAAGTGCCGGTGGGAAAGACAGAGGAAGGGCGGAACGTAACAG
GAGGAGCGGTACGACTACAACAGGAGAAGGATCAAGACTCGAAGACAGAA
GCACTTGACGAGGACAAGGGTAACAATAACTGGGACACAGGCGAGCATGG
GGGACTGCCTGATGCGGGAGCACAGAAACATGACCAAGAAAGGTCGGTTG
CGACTCTTCCAAGGCGTCTATGGCGCGAGGTGCTTCGGCCGCCATCGAGG
GGTGCTTCTTGTGTCGACACCTGTGCCTTGGAGATATTGAGCGATCATGC
GGACGCTTTGTCGTGCTGCGACTTACTTGAAACGCTTACACCGGGACTCG
ACGGGGATGATTACGTGCAGGCCCCTTGCTCCTCGCTACTACGGCACGCT
ATTCCAGCAAAGGCAATAAGTGAGGAGAACAGCCCTTGGCCGCGGGGATC
GGGTGGGGGCCATGAAGTCAGTACCTTACTGCAGATATTGCTGGCTCGAC
GACAGCGGCCCGTTTGCTTCAAAGAAATCTGTTTCCCGCCTGTTGACTCG
ACCATGATGGAAAGTCTGAAACGGAAGCGAGCCCTAGACGTGGTTCTCGC
CCTGATGCCGTCTTGCTTTTCCTTGCGATGGCCCTCTCGCCAGGATGTGC
AAGTAGACTACACACCTTTGTTGCGATCCATGCAGGTTGCGGACAGGTTT
CGATGCTTTGCTGTACAAGATTTAGGGCGAGGATGTCGAAAGAAACGCAC
CTATTGGGATAGAGTGCTCTCAATAGAAATGAAGCACCTTGAAGATGATT
TGGTTTTATTAGCTTCAGACTCGCCTTTTTCGTAATGGCGGCTGTCAGGT
GAAGTGAACGGACTAGGCCAGATCATCTGAGTTGACACGGCACTTGACGA
CTGAATGTACGCAGTCGAGTGTGCGCTGTGGTTCCTCGGACAATCGAGAA
TGACTTACAGTGAGTAGAACGACAAGGAAAAGTAGAAATTTATCTCGTAA
AACGACGCATGTACAAGTAAAAATAGAAATAAGCAACATTTTTCTCATCA
CGTTTTTATTGATTGAAGGTGAGCACGTCTCAAAAGATGAAGGCTGAATT
GAGTAACATCTTCGATGTATCAGAATATTGACT

protein sequence of rna935

>rna935-protein ID=rna935-protein|Name=rna935|organism=Nannochloropsis gaditana|type=polypeptide|length=218bp
MKPDDEYKDVEYWNARFLQEESYDWLVAFEDIECLLRKYVPIDRPLRILH
IGCGNSTLSIQLKHFLHPESYICNQDFSEVLINKMRATYGEETGRFEWMV
GDMTDLASSAFPPASFDIVIEKAALDALTVHTGDPWNPREEVREDVAKVM
RGVAMLLRNDCESLFLSISFHQKHFRLKLLDDMEINFQITVQDIPHTKSL
PHFLYICEKKKHQGTSAN

mRNA from alignment at CM002456.1:767822..768478-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna935 ID=rna935|Name=rna935|organism=Nannochloropsis gaditana|type=mRNA|length=657bp|location=Sequence derived from alignment at CM002456.1:767822..768478- (Nannochloropsis gaditana)
ATGAAACCAGATGATGAATATAAAGATGTGGAGTACTGGAATGCGCGTTT
TTTGCAGGAAGAATCATACGATTGGCTCGTCGCGTTTGAAGACATTGAGT
GTTTATTGAGGAAATACGTACCTATCGACCGTCCACTTCGCATTCTTCAC
ATTGGATGCGGCAATTCGACGCTTTCGATACAGCTGAAACATTTTCTACA
TCCTGAAAGCTATATTTGCAACCAAGACTTTTCCGAGGTGCTGATAAATA
AGATGAGAGCTACTTACGGAGAAGAAACAGGCAGGTTTGAGTGGATGGTG
GGAGACATGACAGATTTGGCTAGCTCTGCTTTCCCTCCGGCTTCATTTGA
CATTGTCATAGAAAAAGCAGCTCTAGATGCCTTGACAGTGCATACAGGTG
ATCCATGGAATCCTAGAGAGGAAGTAAGGGAGGACGTGGCAAAGGTGATG
CGAGGCGTGGCCATGCTCTTACGGAATGATTGCGAAAGCCTTTTTTTGAG
CATTTCATTCCACCAAAAGCACTTTCGCCTGAAATTATTGGATGACATGG
AAATCAACTTTCAGATCACAGTTCAGGATATCCCCCACACCAAATCTTTG
CCTCATTTCTTGTACATTTGCGAGAAAAAAAAACACCAGGGTACATCAGC
TAATTAA

Coding sequence (CDS) from alignment at CM002456.1:767822..768478-

>rna935 ID=rna935|Name=rna935|organism=Nannochloropsis gaditana|type=CDS|length=657bp|location=Sequence derived from alignment at CM002456.1:767822..768478- (Nannochloropsis gaditana)
ATGAAACCAGATGATGAATATAAAGATGTGGAGTACTGGAATGCGCGTTT
TTTGCAGGAAGAATCATACGATTGGCTCGTCGCGTTTGAAGACATTGAGT
GTTTATTGAGGAAATACGTACCTATCGACCGTCCACTTCGCATTCTTCAC
ATTGGATGCGGCAATTCGACGCTTTCGATACAGCTGAAACATTTTCTACA
TCCTGAAAGCTATATTTGCAACCAAGACTTTTCCGAGGTGCTGATAAATA
AGATGAGAGCTACTTACGGAGAAGAAACAGGCAGGTTTGAGTGGATGGTG
GGAGACATGACAGATTTGGCTAGCTCTGCTTTCCCTCCGGCTTCATTTGA
CATTGTCATAGAAAAAGCAGCTCTAGATGCCTTGACAGTGCATACAGGTG
ATCCATGGAATCCTAGAGAGGAAGTAAGGGAGGACGTGGCAAAGGTGATG
CGAGGCGTGGCCATGCTCTTACGGAATGATTGCGAAAGCCTTTTTTTGAG
CATTTCATTCCACCAAAAGCACTTTCGCCTGAAATTATTGGATGACATGG
AAATCAACTTTCAGATCACAGTTCAGGATATCCCCCACACCAAATCTTTG
CCTCATTTCTTGTACATTTGCGAGAAAAAAAAACACCAGGGTACATCAGC
TAATTAA

Synonyms

Publications