rna9318, rna9318 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9318
Unique Name	rna9318
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	708
Alignment location	KK037252.1:371456..373926 +

Link to JBrowse

Properties


Property Name	Value
Product	adenosine kinase
Orig transcript id	gnl\|cribi\|Naga_100215g13.1627.mrna
Orig protein id	gnl\|cribi\|Naga_100215g13.1627
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:371456..373926 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100215g13	gene9034	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9318	rna9318-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21385.1	cds9288	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:371456..373926+
coding sequence from alignment at KK037252.1:371456..373926+

mRNA sequence

>rna9318 ID=rna9318|Name=rna9318|organism=Nannochloropsis gaditana|type=mRNA|length=708bp
ATGGCCAAACTGAAACGATTTTTGAGAAAAGCCTCCTTTCTCTTGGCGAC
ATCCCCATCCTCCTCCTTTTCCTGGCCCCGTGCGTTTTTCCCCTCTCCCT
CCCACGGAGGCCCGCCGCCTGCCCGCACAACCCGCTACTTTTCCCCTGCC
TCGAAGATGTACATGAAGGCCACCTCCTCTTCCCGCACCCCTTCTAATCT
TCTTGCGCAAGTCCGTTGCCATTCTCAAGTCATCCTCGACACAGCAGACT
ACTTGCAATTGGCACATCTTCCGGGTACCCTGGAGGTGACGACCAACCCT
TCTATCGTCTGGCAAGCCGCCCAGAAAGAAGAATACTTCCATCTGTTGGA
AGAAGCCTGCAATATGTACCTCCCCTTGGGCATCGATGGCATCCCTGACA
TGTTAGAAGCCGTCCCGCCCAAATTTGCTCGCGAAATTTGGAAACGGCTC
CCGCATGCTCCCTCCTCCTCCTCCCTTCCTCTCCCCCGAGTGTACGTGCA
GCTGGATCCTCGTTATGCTTTCGACATCGACCTCGCCGTGCGTCAGTCCC
TAGCCCTTGTCGACTTGTGCGTCCACAAGCATCAACTCCCGTTGTCCAAC
CTGGTGATCAAGATACCCGGATCTTGGGAAGGGATTCAGGCCGCCAAGGA
TCTGCGGGCTTTGGAGCGAGTTTTCTTTGACTACCTGAGGGAGAGGCCAG
GGGTATGA

protein sequence of rna9318

>rna9318-protein ID=rna9318-protein|Name=rna9318|organism=Nannochloropsis gaditana|type=polypeptide|length=340bp
MPTILLGMGNPLLDISAEVPQEVLDKYELKLDSAILAEEKHLPLYKELVD
AYKVQYIAGGATQNAIRVAQWMSQTPGSTSFFGCIGKDDFGAELQNCAKA
DGVNAFYKEDPETPTGTCAVLVKDGERSLCANLAAANKFTADHLASVKAK
EMIAEAKMFYIASFFLTVSVESLLVVADHAVEHNKIFAMNLSAPFLIQFF
AEPMAQALPYTDYVFGNESEATAYGELQGWGTDIPTIALRLAAAPKKSGT
RPRVVVFTQGSEATVVAKEGQVEKFPVEMLEKDKLVDTNGAGDAFVGGFL
SVLMRKEGAAMEECVRAGHWASRVIIQRSGCTFPKECDYK

mRNA from alignment at KK037252.1:371456..373926+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9318 ID=rna9318|Name=rna9318|organism=Nannochloropsis gaditana|type=mRNA|length=2471bp|location=Sequence derived from alignment at KK037252.1:371456..373926+ (Nannochloropsis gaditana)
CGAATGCTAACCAGGCACGAGGCTGCGACAACTTCTTGGAAACCATTTTG
TGGGTGTGTGGGAAGGCAGGGTAGCTGCATTCCTGTTGTTAGTGTTTTTA
TTCCCACCAGGTCTTGATTTAGAAATTTTAtcatttttgggggggacgaa
gagccTGACATAGGTTTTCAGAACGCAGTGCGTGTTCCGTCATATCCTAT
TCGAAGGTTGGCGGGGTCGATGGGATGTATCGgatctttcttttccacct
cGCAACCCGTCACAGTGTCCCCACAAAGGCTGCAAACATCGTTAGGAGTT
AGTAAAGTGGCATTGCATGCATTTGGATTAATTTTGGgcgtccctgtccc
tctttctttcctaaGCCCTAGATTGCTTGCATCGTCGGCCATCCATCTGA
CTAGATTAGATCCACTTTTCTAAAAAATCACGAAACGCGCAAGACGTGTT
TTTTAAAGCCTGTACACGTAAATTACATGAATCTCGGCGCAATggcttct
ctttttctcttcaCGCCTCGATTCAGGACAGACAATTTTTCTTTTGTTCT
TCGTTTTCCTACTCTGATGACACTGAGAATCTCATAAAGTTTTCCATTTT
CCAACATTTTGAAGGAAACAAACTACCCACCACTACCAACAACACCATGC
CGACAATCCTTTTGGGAATGGGGAACCCTCTCCTCGACATCTCCGCGGAA
GTGCCGCAGGAGGTGCTGGATAAATATGAGCTCAAGGTAAGGTAGAACGC
TATATCCCTTGCAGACGCATAAGAGCCCTTTTCGCGCGCCATTTGTTCCG
ACGCACGCCTTAGTATACCCCAGGCATCTTCATCCGCTTCCCTgtgtctt
ttcctttctttttttcttcctttcccagtTGGACTCGGCCAtcttggcgg
aggagaagcaccTGCCCCTCTATAAGGAATTGGTCGACGCCTACAAGGTG
CAATACATCGCAGGAGGCGCCACCCAGAACGCCATCCGTGTGGCCCAATG
GATGTCGCAGACACCTGGGGTAAGTGGGTGTTTGACAGAGCTTGCATGGG
CGACAGCCCTCTCCTGACGTTGTagatttccttccttttcctgccccccc
tccctccctcctgccctccccccctccctttagTCCACCAGCTTTTTTGG
ATGCATCGGAAAAGACGATTTCGGGGCGGAACTtcaaaattgcgcgaagg
ccGACGGGGTCAATGCCTTCTATAAGGAAGATCCCGAGACCCCGACAGGC
ACCTGCGCGGTGCTGGTGAAAGATGGAGAGCGGTCTCTCTGTGCGAATTT
GGCTGCCGCCAACAAATTCACCGCGGACCACCTGGCCTCCGTgaaggcca
aggagatgATCGCGGAGGCCAAGATGTTTTACatcgcctccttttttctg
aCCGTCTCGGTCGAGTCTTTGCTGGTGGTGGCCGACCATGCCGTGGAGCA
CAACAAGGTCAGAGGAGGGTGCCGGTGCCGGACTCTCTGGGGGTGGGAGC
ACGGTCGTTGTATAGATCGAAAAAGCTGTGTCGTGCGTTTGGAAGCCCGG
CGTGTCTTTAGCCTGGCCGTGTAACCTTGACGCGCGTCGGCATGGGGTtg
tgcgggggggggggatggtaACCGTCGGGGGCCGATAATTACCGAAGGAC
ATAGCCTGAGTCCCCCCCTTCGCAAGCCCCAGGAAACCCATCGATGTATC
GATTCACCAAGGACCTTATGACCCGCGCACCGACGCCTCTCTTActccct
cctgttccccCCCACCTACCCACTCCATTCCCTTGCTGGGTCTCAGATTT
TTGCCATGAATTTATCCGCGCCTTTTTTGATCCAATTTTTCGCGGAGCCC
ATGGCCCAAGCCCTGCCCTACACCGACTACGTGTTTGGGAACGAATCGGA
GGCCACGGCCTACGGTGAATTGCAAGGGTGGGGCACCGACATCCCGACCA
TTGCCCTGCgcctggcggcggcgccGAAAAAGAGCGGGACACGCCCTCGG
GTGGTAGTGTTCACCcaagggagcgaggcgacCGTGGtcgccaaggaggg
gcaggtgGAGAAATTTCCGGTGGAAATGTTGGAAAAGGACAAGTTGGTGG
ATACGAACGGGGCGGGAGATGCCTTTGTGGGTGGTTTCCTTTCCGTCTTg
atgcggaaggagggggcggcgatggaggaatgCGTCCGGGCGGGGCACTG
GGCAAGTCGGGTCATCATCCAGCGGAGTGGGTGCACGTTCCCGAAGGAGT
GTGACTACAAatagaaaggaggggaaagggagggagggaggagggaggga
gggagggagggagggtctcgagaggcaggaaaagacTAGGTAATACCGAG
CAAAACATCACGTTTCATTGCTGCGGGTGATCCACCGTTCCACTTCAACC
CAATTGAAGCAGCCTGGATTCATGCTCGTGGCTGCGGCGGTATCTTGTTT
TTGTTTCTTGGTTTCTTTTCC

Coding sequence (CDS) from alignment at KK037252.1:371456..373926+

>rna9318 ID=rna9318|Name=rna9318|organism=Nannochloropsis gaditana|type=CDS|length=4092bp|location=Sequence derived from alignment at KK037252.1:371456..373926+ (Nannochloropsis gaditana)
ATGCCGACAATCCTTTTGGGAATGGGGAACCCTCTCCTCGACATCTCCGC
GGAAGTGCCGCAGGAGGTGCTGGATAAATATGAGCTCAAGtTGGACTCGG
CCAtcttggcggaggagaagcaccTGCCCCTCTATAAGGAATTGGTCGAC
GCCTACAAGGTGCAATACATCGCAGGAGGCGCCACCCAGAACGCCATCCG
TGTGGCCCAATGGATGTCGCAGACACCTGGGTCCACCAGCTTTTTTGGAT
GCATCGGAAAAGACGATTTCGGGGCGGAACTtcaaaattgcgcgaaggcc
GACGGGGTCAATGCCTTCTATAAGGAAGATCCCGAGACCCCGACAGGCAC
CTGCGCGGTGCTGGTGAAAGATGGAGAGCGGTCTCTCTGTGCGAATTTGG
CTGCCGCCAACAAATTCACCGCGGACCACCTGGCCTCCGTgaaggccaag
gagatgATCGCGGAGGCCAAGATGTTTTACatcgcctccttttttctgaC
CGTCTCGGTCGAGTCTTTGCTGGTGGTGGCCGACCATGCCGTGGAGCACA
ACAAGATTTTTGCCATGAATTTATCCGCGCCTTTTTTGATCCAATTTTTC
GCGGAGCCCATGGCCCAAGCCCTGCCCTACACCGACTACGTGTTTGGGAA
CGAATCGGAGGCCACGGCCTACGGTGAATTGCAAGGGTGGGGCACCGACA
TCCCGACCATTGCCCTGCgcctggcggcggcgccGAAAAAGAGCGGGACA
CGCCCTCGGGTGGTAGTGTTCACCcaagggagcgaggcgacCGTGGtcgc
caaggaggggcaggtgGAGAAATTTCCGGTGGAAATGTTGGAAAAGGACA
AGTTGGTGGATACGAACGGGGCGGGAGATGCCTTTGTGGGTGGTTTCCTT
TCCGTCTTgatgcggaaggagggggcggcgatggaggaatgCGTCCGGGC
GGGGCACTGGGCAAGTCGGGTCATCATCCAGCGGAGTGGGTGCACGTTCC
CGAAGGAGTGTGACTACAAatagATGCCGACAATCCTTTTGGGAATGGGG
AACCCTCTCCTCGACATCTCCGCGGAAGTGCCGCAGGAGGTGCTGGATAA
ATATGAGCTCAAGtTGGACTCGGCCAtcttggcggaggagaagcaccTGC
CCCTCTATAAGGAATTGGTCGACGCCTACAAGGTGCAATACATCGCAGGA
GGCGCCACCCAGAACGCCATCCGTGTGGCCCAATGGATGTCGCAGACACC
TGGGTCCACCAGCTTTTTTGGATGCATCGGAAAAGACGATTTCGGGGCGG
AACTtcaaaattgcgcgaaggccGACGGGGTCAATGCCTTCTATAAGGAA
GATCCCGAGACCCCGACAGGCACCTGCGCGGTGCTGGTGAAAGATGGAGA
GCGGTCTCTCTGTGCGAATTTGGCTGCCGCCAACAAATTCACCGCGGACC
ACCTGGCCTCCGTgaaggccaaggagatgATCGCGGAGGCCAAGATGTTT
TACatcgcctccttttttctgaCCGTCTCGGTCGAGTCTTTGCTGGTGGT
GGCCGACCATGCCGTGGAGCACAACAAGATTTTTGCCATGAATTTATCCG
CGCCTTTTTTGATCCAATTTTTCGCGGAGCCCATGGCCCAAGCCCTGCCC
TACACCGACTACGTGTTTGGGAACGAATCGGAGGCCACGGCCTACGGTGA
ATTGCAAGGGTGGGGCACCGACATCCCGACCATTGCCCTGCgcctggcgg
cggcgccGAAAAAGAGCGGGACACGCCCTCGGGTGGTAGTGTTCACCcaa
gggagcgaggcgacCGTGGtcgccaaggaggggcaggtgGAGAAATTTCC
GGTGGAAATGTTGGAAAAGGACAAGTTGGTGGATACGAACGGGGCGGGAG
ATGCCTTTGTGGGTGGTTTCCTTTCCGTCTTgatgcggaaggagggggcg
gcgatggaggaatgCGTCCGGGCGGGGCACTGGGCAAGTCGGGTCATCAT
CCAGCGGAGTGGGTGCACGTTCCCGAAGGAGTGTGACTACAAatagATGC
CGACAATCCTTTTGGGAATGGGGAACCCTCTCCTCGACATCTCCGCGGAA
GTGCCGCAGGAGGTGCTGGATAAATATGAGCTCAAGtTGGACTCGGCCAt
cttggcggaggagaagcaccTGCCCCTCTATAAGGAATTGGTCGACGCCT
ACAAGGTGCAATACATCGCAGGAGGCGCCACCCAGAACGCCATCCGTGTG
GCCCAATGGATGTCGCAGACACCTGGGTCCACCAGCTTTTTTGGATGCAT
CGGAAAAGACGATTTCGGGGCGGAACTtcaaaattgcgcgaaggccGACG
GGGTCAATGCCTTCTATAAGGAAGATCCCGAGACCCCGACAGGCACCTGC
GCGGTGCTGGTGAAAGATGGAGAGCGGTCTCTCTGTGCGAATTTGGCTGC
CGCCAACAAATTCACCGCGGACCACCTGGCCTCCGTgaaggccaaggaga
tgATCGCGGAGGCCAAGATGTTTTACatcgcctccttttttctgaCCGTC
TCGGTCGAGTCTTTGCTGGTGGTGGCCGACCATGCCGTGGAGCACAACAA
GATTTTTGCCATGAATTTATCCGCGCCTTTTTTGATCCAATTTTTCGCGG
AGCCCATGGCCCAAGCCCTGCCCTACACCGACTACGTGTTTGGGAACGAA
TCGGAGGCCACGGCCTACGGTGAATTGCAAGGGTGGGGCACCGACATCCC
GACCATTGCCCTGCgcctggcggcggcgccGAAAAAGAGCGGGACACGCC
CTCGGGTGGTAGTGTTCACCcaagggagcgaggcgacCGTGGtcgccaag
gaggggcaggtgGAGAAATTTCCGGTGGAAATGTTGGAAAAGGACAAGTT
GGTGGATACGAACGGGGCGGGAGATGCCTTTGTGGGTGGTTTCCTTTCCG
TCTTgatgcggaaggagggggcggcgatggaggaatgCGTCCGGGCGGGG
CACTGGGCAAGTCGGGTCATCATCCAGCGGAGTGGGTGCACGTTCCCGAA
GGAGTGTGACTACAAatagATGCCGACAATCCTTTTGGGAATGGGGAACC
CTCTCCTCGACATCTCCGCGGAAGTGCCGCAGGAGGTGCTGGATAAATAT
GAGCTCAAGtTGGACTCGGCCAtcttggcggaggagaagcaccTGCCCCT
CTATAAGGAATTGGTCGACGCCTACAAGGTGCAATACATCGCAGGAGGCG
CCACCCAGAACGCCATCCGTGTGGCCCAATGGATGTCGCAGACACCTGGG
TCCACCAGCTTTTTTGGATGCATCGGAAAAGACGATTTCGGGGCGGAACT
tcaaaattgcgcgaaggccGACGGGGTCAATGCCTTCTATAAGGAAGATC
CCGAGACCCCGACAGGCACCTGCGCGGTGCTGGTGAAAGATGGAGAGCGG
TCTCTCTGTGCGAATTTGGCTGCCGCCAACAAATTCACCGCGGACCACCT
GGCCTCCGTgaaggccaaggagatgATCGCGGAGGCCAAGATGTTTTACa
tcgcctccttttttctgaCCGTCTCGGTCGAGTCTTTGCTGGTGGTGGCC
GACCATGCCGTGGAGCACAACAAGATTTTTGCCATGAATTTATCCGCGCC
TTTTTTGATCCAATTTTTCGCGGAGCCCATGGCCCAAGCCCTGCCCTACA
CCGACTACGTGTTTGGGAACGAATCGGAGGCCACGGCCTACGGTGAATTG
CAAGGGTGGGGCACCGACATCCCGACCATTGCCCTGCgcctggcggcggc
gccGAAAAAGAGCGGGACACGCCCTCGGGTGGTAGTGTTCACCcaaggga
gcgaggcgacCGTGGtcgccaaggaggggcaggtgGAGAAATTTCCGGTG
GAAATGTTGGAAAAGGACAAGTTGGTGGATACGAACGGGGCGGGAGATGC
CTTTGTGGGTGGTTTCCTTTCCGTCTTgatgcggaaggagggggcggcga
tggaggaatgCGTCCGGGCGGGGCACTGGGCAAGTCGGGTCATCATCCAG
CGGAGTGGGTGCACGTTCCCGAAGGAGTGTGACTACAAatag

Synonyms

Publications