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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100479g3.6418.mrna |
| Orig protein id | gnl|cribi|Naga_100479g3.6418 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037252.1 | supercontig | KK037252.1:341225..343394 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9306 ID=rna9306|Name=rna9306|organism=Nannochloropsis gaditana|type=mRNA|length=1909bp
TCGTCTGTGATGGCCTTTGCTCAGGGCAACCTCTTGTCCCAATGTAGCAC
CAGCTTTCTCCAGCACATAGGCTTCGCTTGCGAGTGTAGACCCTTTTATT
ATTCTATGTAGCTTGACAACGCTGTGGAGCACAGAGGCGCACGTACTGAT
ACATGTTGATTGTCTGATAAAACACACAAATAGGGCCCTGGAAGACATGG
AGAGCCACGAAGCTACGAGTTTGAGCACAACTTCCTCGACGTCGCTCTGT
ACCCTTTGCGACCGCCCCGTCTGGCGTCTCCCAACTTCTACCGCACAAAC
CCAAACAACTGCTTCATCACATTCAGGTGCTTGCCAGACGTCTATACCTC
GACCCTCTTCACCACCTGCTTCCTCTCTTCCCTCTCCACCTCCATGTTCT
TCCCATCCTCCTCCGCCTTTCCAGCGGCCACCTTCCTCCTCCAGTCGCGC
CTCCCTTTGGACGCCGAGCGCCGCTTCTTCGATGCCTTTATCCTCCCTTC
ATTCTTCCCCCCCACCTTCCGGTCCCCCCTCTTCCCCTGCTTCTTTCGTC
ATGGTGGCCCGCATGGCGGACATGAACATGTCTTACATCCACGTTCAAGA
AGCGGCCGCCGCCGCCATCTCCCCCTCTTCAGTCACCGCCACCAGCAACT
CTTCACCGCGTCCTACTTCCTATACTGGTCTTTTTGAGACCTCGCGACGG
GCGGAGATGGTGCTCGAGTATGGGGCAGGAAAAATTGACTCGGACGCGCC
CGCCTGCTCCCACTGCCTGAATGTGATGCTGCAGGGCCTCGACAAGGAAC
TCGCTTACCTGACAGAGGAGGAGGGCCGTTACAACGCCGTCATCACCCAG
AAGGGCGCCCCCTCCTTCCCTCCCTCCCTTCCTCCCTCCCTTACGTTCGC
TCGAAGCGCGGCCGAGGATGCGGTGAAGGCTTTACAGGAGGAGGAGGAGG
TGAGCCGGGGCGAGGAGGAGAGCTTGAGGGAAAAGTTAAGGTTCCTCTCG
ATGCGAGAGCGGGAAGTGAGGGCTCGGGAGGAAGAATTTTGGGACGCGCT
GTGTCGGTGCGAAGAGGATAAATGGGAGGATGAGGAAGGGGTGGAGGAAA
TGCTTCGGGAGGTGGAGAGGCTGCATGCTCGGGCGGAAGCACTTCAACGC
CCGGGCCACGCGGTGTTGAAGATGTTGCTCTTTGGGAGGAAGGGAGGGAG
GGAGGGCGGGAGGGAGGGGGGGAAAGGTCGGGAGGAGGAGGCTTTGGTGG
CGTTGGAGCCGGGGGGAAGCAGTGGGGGAGGGGAGACCGTCTTCAGGGTC
CACGGGCTTCGGGTGGCGAGGCGGGAAGACCCTCGACGGGACCTGTGGTG
GGCGGAGATCAATGCTGCATGGGGTCGGGTCGTGTTGTTGGTGATTGCCC
TCGTGCACGCGGTTGGGTTTGAGGGCGGGGGGGAGGAAAGGGGAGAGGAG
CCGGGCGGGGGGAGGAAGGGGGGGAGGGGCCGATACAGGGCGGTGTACAT
GGGGGGGGCGTCCCGCATCGTCCAAGACCCGGGTAAGAAATCTCAGCTCA
CGTTTCCCCTCTTTGTGGTGGAAGGGGGGAGATTGGGTGGGAAGGGAGGG
GGCGGCCGGGCGGGCGGGGCCTCGGCAAGTGCATTAAGGCAACAGCAGGC
GACGCGGATGGACGAAGGGGTCCGACGGTTGTGCCTGTTGGTAACGGAAA
TTCAAAAACACGTGCTCACGGTCGACGAAGGGGAGCGGGCGCTGGCGTTG
GAGCAGGAAGAGCGTCTGTTTGAGCTGGACGTGGCGAGTTTGGGGCTGGG
CGAGGAGCGAGGGTGGAACGTGGTGCTGCGCAGGCTGGCGGGGGCGTTGA
ACTGGCTGGTCTGGGTCGTGTGTGAGGGGGTGGGAGGGGCCCGGGGGGGG
GAGGCGTGA back to topprotein sequence of rna9306 >rna9306-protein ID=rna9306-protein|Name=rna9306|organism=Nannochloropsis gaditana|type=polypeptide|length=575bp
MALEDMESHEATSLSTTSSTSLCTLCDRPVWRLPTSTAQTQTTASSHSGA
CQTSIPRPSSPPASSLPSPPPCSSHPPPPFQRPPSSSSRASLWTPSAASS
MPLSSLHSSPPPSGPPSSPASFVMVARMADMNMSYIHVQEAAAAAISPSS
VTATSNSSPRPTSYTGLFETSRRAEMVLEYGAGKIDSDAPACSHCLNVML
QGLDKELAYLTEEEGRYNAVITQKGAPSFPPSLPPSLTFARSAAEDAVKA
LQEEEEVSRGEEESLREKLRFLSMREREVRAREEEFWDALCRCEEDKWED
EEGVEEMLREVERLHARAEALQRPGHAVLKMLLFGRKGGREGGREGGKGR
EEEALVALEPGGSSGGGETVFRVHGLRVARREDPRRDLWWAEINAAWGRV
VLLVIALVHAVGFEGGGEERGEEPGGGRKGGRGRYRAVYMGGASRIVQDP
GKKSQLTFPLFVVEGGRLGGKGGGGRAGGASASALRQQQATRMDEGVRRL
CLLVTEIQKHVLTVDEGERALALEQEERLFELDVASLGLGEERGWNVVLR
RLAGALNWLVWVVCEGVGGARGGEA back to topmRNA from alignment at KK037252.1:341225..343394+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9306 ID=rna9306|Name=rna9306|organism=Nannochloropsis gaditana|type=mRNA|length=2170bp|location=Sequence derived from alignment at KK037252.1:341225..343394+ (Nannochloropsis gaditana)
TCGTCTGTGATGGCCTTTGCTCAGGGCAACCTCTTGTCCCAATGTAGCAC
CAGCTTTCTCCAGCACATAGGCTTCGCTTGCGAGTGTAGACCCTTTTATT
ATTCTATGTAGCTTGACAACGCTGTGGAGCACAGAGGCGCACGTACTGAT
GTGAGTTTTACGGCACTATCTTGACAATCTTTCCATCGTGCCTacctctt
ctctcctcctgctacGGGCAGAATGCTTACTTAAAGAGGAAACTTCCCGC
TCATCCAAACGTAATTCTCTAGACATGTTGATTGTCTGATAAAACACACA
AATAGGGCCCTGGAAGACATGGAGAGCCACGAAGCTACGAGTTTGAGCAC
AACTTCCTCGACGTCGCTCTGTACCCTTTGCGACCGCCCCGTCTGGCGTC
TCCCAACTTCTACCGCACAAACCCAAACAACTGCTTCATCACATTCAGGT
GCTTGCCAGACGTCTATACCTCGACCCTCTTCAccacctgcttcctctct
tccctctccacctccatgttcttcccatcctcctccgcctttccagcggc
caccttcctcctccagtcgCGCCTCCCTTTGGACGCCGAGCGCCGCTTCT
TCGATGCCTTTATCCTCCCTtcattcttcccccccaccttccggtccccc
ctcttcccctgcttcttTCGTCATGGTGGCCCGCATGGCGGACATGAACA
TGTCTTACATCCACGTTCAAGaagcggccgccgccgccatctccccctct
tcagtcaccgccaccagcaACTCTTCACCGCGTCCTACTTCCTATACTGG
TCTTTTTGAGACCTCGCGACGGGCGGAGATGGTGCTCGAGTATGGGGCAG
GAAAAATTGACTCGGACgcgcccgcctgctcccactGCCTGAATGTGATG
CTGCAGGGCCTCGACAAGGTAggagtggggggagggggggggaacagggg
aggaagaatgaGTTCTTTCTTGGGATTCCTAGGACCCATAAAATTTTTGC
Gggatccttcttcccctcttccctccttttcgcgcctcccttcccctccc
tctctaggAACTCGCTTAcctgacagaggaggagggccgttACAACGCCG
TCATCACCCAGAAgggcgccccctccttccctccctcccttcctccctcc
cttacgtTCGCTCGAAGCGCGGCCGAGGATGCGGTGAAGGCTttacagga
ggaggaggaggtgagccggggcgaggaggagagcttgAGGGAAAAGTTAA
GGTTCCTCTCGATGCGAGAGCGGGAAGTGAGGGCtcgggaggaagaattt
tGGGACGCGCTGTGTCGGTGCGAAGAGGATAAatgggaggatgaggaagg
ggtggaggaaatgcttcgggaggtggagaggctGCATGCTCGGGCGGAAG
CACTTCAACGCCCGGGCCACGCGGTGTTGAAGATGTTGCTctttgggagg
aagggagggagggagggcgggagggagggggggaaaggtcgggaggagga
ggctttggtgGCGTTGGAGCCGGGGGGAAgcagtgggggaggggagaccg
TCTTCAGGGTCCACGGGCTTCGGGTGGCGAGGCGGGAAGACCCTCGACGG
GACCTGTGGTGGGCGGAGATCAATGCTGCATGGGGTCGGGTCGTGTTGTT
GGTGATTGCCCTCGTGCACGCGGTTGGGTttgagggcgggggggaggaaa
ggggagaggagccgggcggggggaggaagggggggaggggccgatACAGG
GCGGTGTACATGGGGGGGGCGTCCCGCATCGTCCAAGACCCGGGTAAGAA
ATCTCAGCTCACGTTTCCCCTCTTtgtggtggaaggggggagattgggtg
ggaagggagggggcggccgggcgggcggggcctcGGCAAGTGCATTAAGG
CAACAGCAGGCGACGCGGATGGACGAAGGGGTCCGACGGTTGTGCCTGTT
GGTAACGGAAATTCAAAAACACGTGCTCACGGTCGACGAAGGGGAGCGGG
CGCTGGCgttggagcaggaagagcgtCTGTTTGAGCTGGACGTGGCGAGT
TTGGggctgggcgaggagcgagggtggAACGTGGTGCTGCGCAGGCTGGC
GGGGGCGTTGAACTGGCTGGTCTGGGTCGTGTgtgagggggtgggagggg
cccgggggggggaggcgtga back to topCoding sequence (CDS) from alignment at KK037252.1:341225..343394+ >rna9306 ID=rna9306|Name=rna9306|organism=Nannochloropsis gaditana|type=CDS|length=5184bp|location=Sequence derived from alignment at KK037252.1:341225..343394+ (Nannochloropsis gaditana)
ATGGCCCTGGAAGACATGGAGAGCCACGAAGCTACGAGTTTGAGCACAAC
TTCCTCGACGTCGCTCTGTACCCTTTGCGACCGCCCCGTCTGGCGTCTCC
CAACTTCTACCGCACAAACCCAAACAACTGCTTCATCACATTCAGGTGCT
TGCCAGACGTCTATACCTCGACCCTCTTCAccacctgcttcctctcttcc
ctctccacctccatgttcttcccatcctcctccgcctttccagcggccac
cttcctcctccagtcgCGCCTCCCTTTGGACGCCGAGCGCCGCTTCTTCG
ATGCCTTTATCCTCCCTtcattcttcccccccaccttccggtcccccctc
ttcccctgcttcttTCGTCATGGTGGCCCGCATGGCGGACATGAACATGT
CTTACATCCACGTTCAAGaagcggccgccgccgccatctccccctcttca
gtcaccgccaccagcaACTCTTCACCGCGTCCTACTTCCTATACTGGTCT
TTTTGAGACCTCGCGACGGGCGGAGATGGTGCTCGAGTATGGGGCAGGAA
AAATTGACTCGGACgcgcccgcctgctcccactGCCTGAATGTGATGCTG
CAGGGCCTCGACAAGgAACTCGCTTAcctgacagaggaggagggccgttA
CAACGCCGTCATCACCCAGAAgggcgccccctccttccctccctcccttc
ctccctcccttacgtTCGCTCGAAGCGCGGCCGAGGATGCGGTGAAGGCT
ttacaggaggaggaggaggtgagccggggcgaggaggagagcttgAGGGA
AAAGTTAAGGTTCCTCTCGATGCGAGAGCGGGAAGTGAGGGCtcgggagg
aagaattttGGGACGCGCTGTGTCGGTGCGAAGAGGATAAatgggaggat
gaggaaggggtggaggaaatgcttcgggaggtggagaggctGCATGCTCG
GGCGGAAGCACTTCAACGCCCGGGCCACGCGGTGTTGAAGATGTTGCTct
ttgggaggaagggagggagggagggcgggagggagggggggaaaggtcgg
gaggaggaggctttggtgGCGTTGGAGCCGGGGGGAAgcagtgggggagg
ggagaccgTCTTCAGGGTCCACGGGCTTCGGGTGGCGAGGCGGGAAGACC
CTCGACGGGACCTGTGGTGGGCGGAGATCAATGCTGCATGGGGTCGGGTC
GTGTTGTTGGTGATTGCCCTCGTGCACGCGGTTGGGTttgagggcggggg
ggaggaaaggggagaggagccgggcggggggaggaagggggggaggggcc
gatACAGGGCGGTGTACATGGGGGGGGCGTCCCGCATCGTCCAAGACCCG
GGTAAGAAATCTCAGCTCACGTTTCCCCTCTTtgtggtggaaggggggag
attgggtgggaagggagggggcggccgggcgggcggggcctcGGCAAGTG
CATTAAGGCAACAGCAGGCGACGCGGATGGACGAAGGGGTCCGACGGTTG
TGCCTGTTGGTAACGGAAATTCAAAAACACGTGCTCACGGTCGACGAAGG
GGAGCGGGCGCTGGCgttggagcaggaagagcgtCTGTTTGAGCTGGACG
TGGCGAGTTTGGggctgggcgaggagcgagggtggAACGTGGTGCTGCGC
AGGCTGGCGGGGGCGTTGAACTGGCTGGTCTGGGTCGTGTgtgagggggt
gggaggggcccgggggggggaggcgtgaATGGCCCTGGAAGACATGGAGA
GCCACGAAGCTACGAGTTTGAGCACAACTTCCTCGACGTCGCTCTGTACC
CTTTGCGACCGCCCCGTCTGGCGTCTCCCAACTTCTACCGCACAAACCCA
AACAACTGCTTCATCACATTCAGGTGCTTGCCAGACGTCTATACCTCGAC
CCTCTTCAccacctgcttcctctcttccctctccacctccatgttcttcc
catcctcctccgcctttccagcggccaccttcctcctccagtcgCGCCTC
CCTTTGGACGCCGAGCGCCGCTTCTTCGATGCCTTTATCCTCCCTtcatt
cttcccccccaccttccggtcccccctcttcccctgcttcttTCGTCATG
GTGGCCCGCATGGCGGACATGAACATGTCTTACATCCACGTTCAAGaagc
ggccgccgccgccatctccccctcttcagtcaccgccaccagcaACTCTT
CACCGCGTCCTACTTCCTATACTGGTCTTTTTGAGACCTCGCGACGGGCG
GAGATGGTGCTCGAGTATGGGGCAGGAAAAATTGACTCGGACgcgcccgc
ctgctcccactGCCTGAATGTGATGCTGCAGGGCCTCGACAAGgAACTCG
CTTAcctgacagaggaggagggccgttACAACGCCGTCATCACCCAGAAg
ggcgccccctccttccctccctcccttcctccctcccttacgtTCGCTCG
AAGCGCGGCCGAGGATGCGGTGAAGGCTttacaggaggaggaggaggtga
gccggggcgaggaggagagcttgAGGGAAAAGTTAAGGTTCCTCTCGATG
CGAGAGCGGGAAGTGAGGGCtcgggaggaagaattttGGGACGCGCTGTG
TCGGTGCGAAGAGGATAAatgggaggatgaggaaggggtggaggaaatgc
ttcgggaggtggagaggctGCATGCTCGGGCGGAAGCACTTCAACGCCCG
GGCCACGCGGTGTTGAAGATGTTGCTctttgggaggaagggagggaggga
gggcgggagggagggggggaaaggtcgggaggaggaggctttggtgGCGT
TGGAGCCGGGGGGAAgcagtgggggaggggagaccgTCTTCAGGGTCCAC
GGGCTTCGGGTGGCGAGGCGGGAAGACCCTCGACGGGACCTGTGGTGGGC
GGAGATCAATGCTGCATGGGGTCGGGTCGTGTTGTTGGTGATTGCCCTCG
TGCACGCGGTTGGGTttgagggcgggggggaggaaaggggagaggagccg
ggcggggggaggaagggggggaggggccgatACAGGGCGGTGTACATGGG
GGGGGCGTCCCGCATCGTCCAAGACCCGGGTAAGAAATCTCAGCTCACGT
TTCCCCTCTTtgtggtggaaggggggagattgggtgggaagggagggggc
ggccgggcgggcggggcctcGGCAAGTGCATTAAGGCAACAGCAGGCGAC
GCGGATGGACGAAGGGGTCCGACGGTTGTGCCTGTTGGTAACGGAAATTC
AAAAACACGTGCTCACGGTCGACGAAGGGGAGCGGGCGCTGGCgttggag
caggaagagcgtCTGTTTGAGCTGGACGTGGCGAGTTTGGggctgggcga
ggagcgagggtggAACGTGGTGCTGCGCAGGCTGGCGGGGGCGTTGAACT
GGCTGGTCTGGGTCGTGTgtgagggggtgggaggggcccgggggggggag
gcgtgaATGGCCCTGGAAGACATGGAGAGCCACGAAGCTACGAGTTTGAG
CACAACTTCCTCGACGTCGCTCTGTACCCTTTGCGACCGCCCCGTCTGGC
GTCTCCCAACTTCTACCGCACAAACCCAAACAACTGCTTCATCACATTCA
GGTGCTTGCCAGACGTCTATACCTCGACCCTCTTCAccacctgcttcctc
tcttccctctccacctccatgttcttcccatcctcctccgcctttccagc
ggccaccttcctcctccagtcgCGCCTCCCTTTGGACGCCGAGCGCCGCT
TCTTCGATGCCTTTATCCTCCCTtcattcttcccccccaccttccggtcc
cccctcttcccctgcttcttTCGTCATGGTGGCCCGCATGGCGGACATGA
ACATGTCTTACATCCACGTTCAAGaagcggccgccgccgccatctccccc
tcttcagtcaccgccaccagcaACTCTTCACCGCGTCCTACTTCCTATAC
TGGTCTTTTTGAGACCTCGCGACGGGCGGAGATGGTGCTCGAGTATGGGG
CAGGAAAAATTGACTCGGACgcgcccgcctgctcccactGCCTGAATGTG
ATGCTGCAGGGCCTCGACAAGgAACTCGCTTAcctgacagaggaggaggg
ccgttACAACGCCGTCATCACCCAGAAgggcgccccctccttccctccct
cccttcctccctcccttacgtTCGCTCGAAGCGCGGCCGAGGATGCGGTG
AAGGCTttacaggaggaggaggaggtgagccggggcgaggaggagagctt
gAGGGAAAAGTTAAGGTTCCTCTCGATGCGAGAGCGGGAAGTGAGGGCtc
gggaggaagaattttGGGACGCGCTGTGTCGGTGCGAAGAGGATAAatgg
gaggatgaggaaggggtggaggaaatgcttcgggaggtggagaggctGCA
TGCTCGGGCGGAAGCACTTCAACGCCCGGGCCACGCGGTGTTGAAGATGT
TGCTctttgggaggaagggagggagggagggcgggagggagggggggaaa
ggtcgggaggaggaggctttggtgGCGTTGGAGCCGGGGGGAAgcagtgg
gggaggggagaccgTCTTCAGGGTCCACGGGCTTCGGGTGGCGAGGCGGG
AAGACCCTCGACGGGACCTGTGGTGGGCGGAGATCAATGCTGCATGGGGT
CGGGTCGTGTTGTTGGTGATTGCCCTCGTGCACGCGGTTGGGTttgaggg
cgggggggaggaaaggggagaggagccgggcggggggaggaaggggggga
ggggccgatACAGGGCGGTGTACATGGGGGGGGCGTCCCGCATCGTCCAA
GACCCGGGTAAGAAATCTCAGCTCACGTTTCCCCTCTTtgtggtggaagg
ggggagattgggtgggaagggagggggcggccgggcgggcggggcctcGG
CAAGTGCATTAAGGCAACAGCAGGCGACGCGGATGGACGAAGGGGTCCGA
CGGTTGTGCCTGTTGGTAACGGAAATTCAAAAACACGTGCTCACGGTCGA
CGAAGGGGAGCGGGCGCTGGCgttggagcaggaagagcgtCTGTTTGAGC
TGGACGTGGCGAGTTTGGggctgggcgaggagcgagggtggAACGTGGTG
CTGCGCAGGCTGGCGGGGGCGTTGAACTGGCTGGTCTGGGTCGTGTgtga
gggggtgggaggggcccgggggggggaggcgtga back to top
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