rna930, rna930 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna930
Unique Name	rna930
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2719
Alignment location	CM002456.1:753443..755162 +

Link to JBrowse

Properties


Property Name	Value
Product	ribosome production factor
Orig transcript id	gnl\|cribi\|Naga_100022g44.864.mrna
Orig protein id	gnl\|cribi\|Naga_100022g44.864
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:753443..755162 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100022g44	gene893	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna930	rna930-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29765.1	cds930	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:753443..755162+
coding sequence from alignment at CM002456.1:753443..755162+

mRNA sequence

>rna930 ID=rna930|Name=rna930|organism=Nannochloropsis gaditana|type=mRNA|length=2719bp
ACAGAATAACAGGCGTCCATGCCCCTAAAGGCGTGCTCCAAGCCTGTGAC
AGTACTCGTTTGAGTAACACAGTGCCAAGACAAGGCCTAAGCCTAACAGC
AAAGTAGATGCTTATGAAAGATCGTCAAGAAGCATTATGAGCTGGATACT
TGCGCACCCCGAAGTATAAGGTATCGCTGCTTGAGATTGCACTTTGCCTC
CGGAGGCTTGCAAGGGCACTTTCTCCAAGCAACGGCACTTCCTCCAAGCA
AATTACAGAAGACAGCATGGAGGAAAGCCAGAAATATGACGAGGAGGTCG
CGCGACTTCGGGACACTAATCACAATATTATTGGTGAAGAGGAGATTCAA
GACCATCTACAATGTGAAGTGCAGAAAATTCCATCGGCCAAGTCTGCATC
TGCTCAAGAGGCTTCTCATCATGACCCCAAGCCTAAGCACATTTCAGGGC
TGTCATTAGGCAAGTATGCTGCTACAACTCCGGTGGGACCGTCCAGGGGG
CCGTCAAGACGCATAAGCTTGCGTACATTAGCGCCGCTAATGCGACTCCG
AAGTCAAGATATCAAAAAGCATCCTTGGATTGTTGCACTCAACAGCACGC
GTGTAAAAGAGAAGAGGTTGATAGAACAAGGTATCGCTAAATTCAATGAG
AAAGCTGCCGCTGGTATTGACTTTCTCATTGAAAATGGAGTACTCCAGAG
AGCTCCAGCAGACGTTGCCGTGTGGCTGAACCAGCAAGCATTGGAATTGA
GTAAAAAGCGTCTAGGGGAGTATCTGGGAGGTAACGATTCTTTTGCGCAG
GAGGTTTTGCATCAACTCCTACAGGACTATGACTTTCAAGGGATGTCCAT
CGATGAAGCTATGCGGGTGTTTATCAATGATATTCGCATGCCAGGCGAGG
CCCAGATGCTGGATCGAATCCTAAATGCTTTTGCGAAGCGCTTTTTTGAG
ACCACTCGAAATGAGAACCAATACGCAACAGAGGATACTGTATATATCCT
CTCCTTTTCCATCATGCTTCTCAACACGGATCTTCATAACCGGAATCTTC
CCCGAAAGGAAAAAATGCGCCTTGAGGACTTTATCCGAAACAACCGCGGT
ATTAATGCCGGACGAGACCTGCCACCTGAGCTTCTTTCAACGTTATACTA
CTCGATCAAACGCAAAGAATTGCGGATGAAGGAAGGAGATATGTGGGAGT
CAGAATCCCTTACCTTTGTGGCGCCACGAATGAGCGGCTGGCTTGAAAAA
CAGCTTCAGGGTCAGCTTGGGTTTTGCCGTTTTCACAGATTTTGGTTCGT
CTTGACGAATGGGTGTCTCTTTTATTTTTCAAGCCCCGTGGATAGAAATC
CGCGCTGCATCATTATTCTGGAGGCTGTCATGGCGATAAAGGGCGCGTCT
TCCACGGAGATCATCCTCTACAGCAATGGGGGGGGGATAATCAAAAGCGT
GAAGATCGGCAAGCGAGACAAAGCCACGACCCGGGGCCAGCACACACATT
TTATTTTCCGAACAGGCTCACAAAAGGAGCGCGACGAATGGGTGGAGGCA
TTTCAAACCGAGACGGAACCTTTCCAGCGCCATCATCGCCTTGGGGGCTG
TGGCATTCCAGGCGCCAGCCAGGGAAAATGTACTAGCCCTGAGGTAGCAA
GTGCTGGGAGTGATCCAAGTGTGCAAGGTATCGCAAAATTCTTAAGTCAG
TATCGTAGCCCACGCTCGGTAGGAGGTGTACGTCCGGTCGCTGAAGTCCC
ACACGCGCACACGTCATGTCTAGCCGAAGGTTGGATGCGGCGCAGGTCTT
ACGGAAGCCGAGGCTGGCAGCGACGGTATTTTATGCTGATCGCAGTGGGT
AAAACAAAGCATCGGCCTGAACATTCTGAGCTTCATTGGTATACGACATT
GGAAATGGCCCAATCTCACATTGGCATTCGAGGCTGCCAAGGCAGCATAT
CGCTCGATGACCCCTATCTAGTCTTTTGCGTCACTACTGCTATCCACAGT
CCATCCTACCGGCTTCCGGAGCCCGCGGCTACTGTCTTTGAGTTTGAGAC
CATGCTACATGGTAGCAAGGTGAAAGAATTGATTTCACCCGAGGATCAGG
AAAGCCTCAGTTTGTGGTTGAACGCGCTTCAGCCACTTGTGCCGGTTCGC
AATGGCGAGCACAGGCAGCGAGACACGGCCATCCCCGATTCATAAGTAGC
TTAGACCGTCAACTAAACACTGTCCACTTCAATTAAACTCGCTGACGCTA
TGTGCATTTGAAATTAGAATTGTCTTCTTGCACCTATGGAATTAGCTGCA
TAGTGCGCTTGATAAGTATGGACTGTTAATGTCGAAGCCCATGCAGAAAT
AGATAAAGGTCGTGGTTCTGAGATGATGTGCAATGTAGAGGGGAACCACG
CACGGAAAAGAGAGAGGTCTTCATTCCGCACAAAATTTTCAAACATACAT
CCACGCAAACATTTACGCGTCCTTCCAGTTTAAAAGTAAGAAGGAGTGCG
CCCCAAACACCAATTTTCCGAGAGATTCCAGGCAATTTAGTTATGTGTAT
GGAAATGAATCCAAAACCGGTGTGTTTTCATGCCCTTTGCAGCAAAGTGT
AGCTCTTCAGCGCACTGTGAGTACGTGTTGAGATGTTATCTCCCTTCTTT
ACAGAAAAGTGTCGGAGCTGACTGCGAAAAAGGAAGCAAAGGTGAACTTA
AAAAATCTTTGTTGCCATG

protein sequence of rna930

>rna930-protein ID=rna930-protein|Name=rna930|organism=Nannochloropsis gaditana|type=polypeptide|length=328bp
MVKKEVSRIRNRCKRREVHAKVKAEKKKVKKSERTKRQREALELGDEAPP
KQVPRTLENTREVDETIVQPDDLEVVADEAEDEFQPYFSGKETPKILITT
RPRPSRELFHFVGDLMQVIPNAFFYPRKSFEVKAICKHAEEGGFTHVFIL
SEKYKACNGLLVSHLPCGPTVFFKVSNVTPGAKIAHHGQPTAHVPELILN
NFNTRLGHRVGRFLGSFFPHAPEFRGRQVVTFHNQRDFLFVRHHRYVFDE
KKAKSVPEINNPKKIKSAGDGSKAIAAGGIRARLQELGPRFTLKLRWLQE
GTFDTKFGEYEWLHKRKEMDTTRRRFHL

mRNA from alignment at CM002456.1:753443..755162+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna930 ID=rna930|Name=rna930|organism=Nannochloropsis gaditana|type=mRNA|length=1720bp|location=Sequence derived from alignment at CM002456.1:753443..755162+ (Nannochloropsis gaditana)
CGGACCAAAGCTCGGACGCCGACAGCATCACATATGACCATGATTCGACA
GGTTTCGTAGACTCAGATCCCATTTTGGCCTTCAATGTCTGTTTTATCAG
GAGAGATAACCTGAAGTGGAGTGCATCCTTACCTTGGACACGGCAGGGTT
AAGGATCATGAGGCACCAGGGCGTTCCAGTCCATCCGAGCGATGCGGTGC
ATTAGAGATTAAAAAGGTCTTCATTGTATCCTCTTGAAGCGTTGCTTTCC
CGAGTTTAACTCTCGCTATGCTGACGTTCGTTTTTTCCTCGGCAGGTCAT
GGTGAAAAAGGAGGTTTCCCGGATCAGGAATCGATGTAAGCGCCGGGAGG
TGCACGCCAAGGTCAAGGctgagaagaagaaggtcAAGAAGAGCGAGCGG
ACTaagaggcagagagaggCCCTGGAGCTGGGTGACGAGGCACCACCTAA
GCAGGTTCGTGGAACGACTCTTAAGTATATAGTACTACTTAACCAAGACC
TGGACCTTGCTGAGATTTTCTCCTGAAAATCTAAGAGTTTCCACCAGGTT
ACTGCGAATCGCGGGGATGTAATGCACGTCATGTATTCCACGATAAGTCA
TATCCATATGAATAAATGTCCTGTATCTTTCTCATTTTTTGGCGTGCAGG
TGCCGCGTACACTAGAAAATACGCGAGAGGTAGACGAGACGATCGTGCAG
CCCGACGATCTTGAGGTCGTAGCGGACGAAGCGGAGGACGAATTTCAGCC
CTATTTTTCAGGCAAAGAAACCCCCAAAATCCTTATTACAACACGGCCCA
GACCTTCACGGGAACTGTTTCACTTTGTTGGTGATCTTATGCAGGTGATA
CCCAACGCTTTTTTCTATCCGCGGAAAAGCTTCGAGGTCAAAGCAATCTG
CAAGCACGctgaggagggcggctttACTCATGTTTTCATCCTCAGTGAGA
AGTACAAGGCTTGTAACGGGCTTCTcgtttcccacctcccttgcGGCCCA
ACTGTCTTTTTCAAAGTCTCAAACGTCACTCCCGGCGCCAAGATTGCACA
CCATGGGCAGCCTACCGCCCACGTCCCAGAGCTCATCCTCAACAACTTTA
ACACTCGGCTTGGGCATCGAGTGGGTCGCTTTCTTggctccttttttcct
catgCTCCGGAATTCCGTGGTCGACAAGTGGTAACTTTTCATAACCAGCG
AGACTTCCTTTTCGTCCGACACCATCGATACGTCTTCGACGAGAAGAAGG
CCAAGAGCGTCCCGGAAATTAACAACCCTAAAAAAATAAAATCAGCCGGA
GACGGGTCAAAAGCAATAGCTGCAGGGGGGATTCGAGCCCGCCTTCAAGA
GCTGGGTCCGCGTTTCACTCTCAAATTGAGATGGTTGCAAGAAGGCACTT
TCGACACTAAATTTGGGGAATATGAATGGCTACATAAACGTAAAGAGATG
GACACCACTCGCCGCCGCTTCCACCTCTAATAACTCGATCATGTGGTTAT
CTGTAAAGGAGGTGAATCTGAAGAAAAATCAAAGACCTCTCTGCTCAAAC
ATTTTCTTTTAACCCTCACATCTGAGAGAGCTCTCACGTAGTCTGTCATG
CCAGCGAAATGCAGTGGCAGGGAAAAtgagaagaaaaatgaaagagACAA
GACTTGGGCCCAATTTTCATTTTTGGGTAGACTTGTGACGTTCAAAAACC
TGTCCTTCTTCTAAGACTCG

Coding sequence (CDS) from alignment at CM002456.1:753443..755162+

>rna930 ID=rna930|Name=rna930|organism=Nannochloropsis gaditana|type=CDS|length=1974bp|location=Sequence derived from alignment at CM002456.1:753443..755162+ (Nannochloropsis gaditana)
ATGGTGAAAAAGGAGGTTTCCCGGATCAGGAATCGATGTAAGCGCCGGGA
GGTGCACGCCAAGGTCAAGGctgagaagaagaaggtcAAGAAGAGCGAGC
GGACTaagaggcagagagaggCCCTGGAGCTGGGTGACGAGGCACCACCT
AAGCAGGTGCCGCGTACACTAGAAAATACGCGAGAGGTAGACGAGACGAT
CGTGCAGCCCGACGATCTTGAGGTCGTAGCGGACGAAGCGGAGGACGAAT
TTCAGCCCTATTTTTCAGGCAAAGAAACCCCCAAAATCCTTATTACAACA
CGGCCCAGACCTTCACGGGAACTGTTTCACTTTGTTGGTGATCTTATGCA
GGTGATACCCAACGCTTTTTTCTATCCGCGGAAAAGCTTCGAGGTCAAAG
CAATCTGCAAGCACGctgaggagggcggctttACTCATGTTTTCATCCTC
AGTGAGAAGTACAAGGCTTGTAACGGGCTTCTcgtttcccacctcccttg
cGGCCCAACTGTCTTTTTCAAAGTCTCAAACGTCACTCCCGGCGCCAAGA
TTGCACACCATGGGCAGCCTACCGCCCACGTCCCAGAGCTCATCCTCAAC
AACTTTAACACTCGGCTTGGGCATCGAGTGGGTCGCTTTCTTggctcctt
ttttcctcatgCTCCGGAATTCCGTGGTCGACAAGTGGTAACTTTTCATA
ACCAGCGAGACTTCCTTTTCGTCCGACACCATCGATACGTCTTCGACGAG
AAGAAGGCCAAGAGCGTCCCGGAAATTAACAACCCTAAAAAAATAAAATC
AGCCGGAGACGGGTCAAAAGCAATAGCTGCAGGGGGGATTCGAGCCCGCC
TTCAAGAGCTGGGTCCGCGTTTCACTCTCAAATTGAGATGGTTGCAAGAA
GGCACTTTCGACACTAAATTTGGGGAATATGAATGGCTACATAAACGTAA
AGAGATGGACACCACTCGCCGCCGCTTCCACCTCTAAATGGTGAAAAAGG
AGGTTTCCCGGATCAGGAATCGATGTAAGCGCCGGGAGGTGCACGCCAAG
GTCAAGGctgagaagaagaaggtcAAGAAGAGCGAGCGGACTaagaggca
gagagaggCCCTGGAGCTGGGTGACGAGGCACCACCTAAGCAGGTGCCGC
GTACACTAGAAAATACGCGAGAGGTAGACGAGACGATCGTGCAGCCCGAC
GATCTTGAGGTCGTAGCGGACGAAGCGGAGGACGAATTTCAGCCCTATTT
TTCAGGCAAAGAAACCCCCAAAATCCTTATTACAACACGGCCCAGACCTT
CACGGGAACTGTTTCACTTTGTTGGTGATCTTATGCAGGTGATACCCAAC
GCTTTTTTCTATCCGCGGAAAAGCTTCGAGGTCAAAGCAATCTGCAAGCA
CGctgaggagggcggctttACTCATGTTTTCATCCTCAGTGAGAAGTACA
AGGCTTGTAACGGGCTTCTcgtttcccacctcccttgcGGCCCAACTGTC
TTTTTCAAAGTCTCAAACGTCACTCCCGGCGCCAAGATTGCACACCATGG
GCAGCCTACCGCCCACGTCCCAGAGCTCATCCTCAACAACTTTAACACTC
GGCTTGGGCATCGAGTGGGTCGCTTTCTTggctccttttttcctcatgCT
CCGGAATTCCGTGGTCGACAAGTGGTAACTTTTCATAACCAGCGAGACTT
CCTTTTCGTCCGACACCATCGATACGTCTTCGACGAGAAGAAGGCCAAGA
GCGTCCCGGAAATTAACAACCCTAAAAAAATAAAATCAGCCGGAGACGGG
TCAAAAGCAATAGCTGCAGGGGGGATTCGAGCCCGCCTTCAAGAGCTGGG
TCCGCGTTTCACTCTCAAATTGAGATGGTTGCAAGAAGGCACTTTCGACA
CTAAATTTGGGGAATATGAATGGCTACATAAACGTAAAGAGATGGACACC
ACTCGCCGCCGCTTCCACCTCTAA

Synonyms

Publications