rna93, rna93 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna93
Unique Name	rna93
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2867
Alignment location	CM002455.1:255434..257562 -

Link to JBrowse

Properties


Property Name	Value
Product	guanine nucleotide-binding 3
Orig transcript id	gnl\|cribi\|Naga_100033g18.8429.mrna
Orig protein id	gnl\|cribi\|Naga_100033g18.8429
Gene	Nug1
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:255434..257562 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Nug1	gene91	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30590.1	cds93	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna93	rna93-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:255434..257562-
coding sequence from alignment at CM002455.1:255434..257562-

mRNA sequence

>rna93 ID=rna93|Name=rna93|organism=Nannochloropsis gaditana|type=mRNA|length=2867bp
AGAGGGCAACGTCCACGCGCGTTGGTCTATTTCATGTCCACTTGTTGCTG
TTGGATAATTTATGGTCCAGTGTTTCCGTGATTTTCGACCTTCCGAGGTT
TGAATGACAATGGAAATCCCTAGTCTTTCTTCAAAACCATTGCCAAGATA
CCCCGGTCCTCTCCTCGAGTGTAGCATGTCCTTCGTCGAACTTCAACTAG
TAATCATACCCAACACTTTTTCCCGGCACTTTTCCTTGCAGACCCGCATC
ATGGGAATTAAACGTCGACGGGCTGCGGAGGCGGATGTCTCGTTCGTACC
AAAGAAGGGCAGTGAAGACAGCCTTTCCCCTTCGTCCTCGACGACAGCGG
CCCTCAGAAACCCCACATTGACGCCATCGCAAACCCAGACAGCCATGCTT
CTTGCCCTCCGCGCAGGGGGCTCCTTAGGTTGGGGCAAGCCCAACGACGA
GCCTTTTTGGCCCTGTATAGCGGCACGCTCCTACTCGGTCCTGCACCTTT
TCACAAGCACTCAGGCCCCCCGCCAGCCTCTGGGGAAGGGCCAGCTCTTG
GCATACTTCTTGGGCGAAGACACGTACGACATTCTGGACGAAGCCTGGTT
TGAAGTCGGGTACGTTTTACGGAAGCCGAGCAAGGTACAATTGGCGGCCC
GTCCAGAATACGCCGCAGGGGTCGCCCTAGGAGAGGGGTTGCAAGCCCGC
TTAGATTCGTTGGACGACGAGGAAGCAGAAAAATTGCGCGGCCTACTCCG
CAGAAAGGAAGGACGGGTGGTCCAGGTGCATGATGACAAATGGTATGGAA
CGGCAGTCGGGCCATCCGAAGGCGATGGGGCCAGAGGCCGTGGCGATTCT
GGATATGTTTCCGGCCATGCGACCGGAATATGCTGGCCGGCGGTGGCGGT
GGACTCGTGGGAGGCGGGGAACAGGCTAGGACTGGGCCTCAGCCTGCCCA
AATGTACATTGAGCCGAGGAGAGACCTTGGTGTTCAGAATGGGTAGCTGG
GTGGCGCCGAAGGAGCGATGGGCCGTGGTCCGGCACCTGACTCCTTTCGT
ATGCACAGAGGGTAGCTTCGAGACACCATCGGCGGCCCCTGGGCCGGTGA
AAGCGGGAAAAGGCGGCGATCTCTGGCAGTCCATGCTCGAAGCTGCCAGG
GCGGAGGCTTGTACACTCGTGGACTCCTTGGCTAGGACCTGGCGCCGGAC
GCGGGGGGCCCAGAGCCAGGGCGTGGAGACCGACCGAGGGGGAACTCGGG
CGGAGGGAGTCCTTGGGGCAGGGGCAGGCACGTCTGGGGCTGGTTCCAAG
GGGAGGAAGCCGGGCGGGGGAAGGAATGAGGCGCGAGACAGGCAACGAGC
GGGGGGCGGTCCGTGTCGGGTGGGGAGCGGGGAGGAAGGCGAGGACGGGA
AGGAGGAAGGGAAAGAGGACAGGAAAGGGGAAGGAAGAAAAGCGGAGGCC
GCTACTGCGAAGAATCAGGAGACGATGAGCCTTCAGGGAGTCGATGGAAG
GGCACTGAGGGAGGGAAATGCTTCCACGGCACGCGTCGAGACTCCCACCG
CCCTGGGATTCGTGAGGAAGGAGGCGGGGGACCAGGGCGGCTGCCGACAA
GGAAGGGGAAACGGGACTTATCCAGGGGCGCCAGGGGAGGGGCAGCCGGA
TTCAATGAATCATTCCGTGTCAAGCAGGAACCAGTCCAGACTCCCCCCCC
CCCGACCACTGACCCCTGAGGAGGTGGAAAAAATTCGCCGCCTGGCCGAA
GGGCTCCTGTACATGGCAGGGCTGGAGGGAGGGCAAGGAGAGGACGGCCT
GCGTCGGGATTTGAACGCGCTGCGCTTGTTCGTGAGCCGGGGAAAAGAGA
TCTCTCAGCCCACCCTGGCCCGCTTGGAGAGGGGGTTGAGGACCTACATG
GGCCGCATGCGGGCACAGCTGTTGCGCGGAAGGAGGGAGTACCGACGGTG
GCAACGAGGGAGCAGGGGGAAGGAGGAGAAAGAGGTGGACGCAACCGAAG
TGTATAAGGCGCTGGAGTCGACCGTACTGGCTGCCACCCGACGGCTGGAG
AAGCGACGAGGGCCGTTGCAGCGTCTGCTTGGACAAGCGAGGAGGGGAGG
GGCGGGGGCGAGGGAGGGCGGCAACGGAGGGTGCGTGCAAGCGCGGGGGC
GAGAGCAGCTCATGATGGACGTGGAGGTGGCCCTGGATGCCTTGACGAGG
GTGAGAGACACATTGCTCGCAACGCAGGCCTCGACAGGGCAGAAGGAGGA
CAAGGAAGAGACTACGAGACCGACTGCTTCCTCCCATGGGCCCCGCCATC
CCCAGGTTGCACGGACCATCGCCTCCCCAGGAAGGTCAGCGATACATGGG
AGGGATGATAACGAGAGCAGCATGCTGCAAGCAGCAGCGCTTTTCCGGCT
GGGGAGGGAGTTGACGGAGGATCAGATCGCGGCGGCGGAACATCTACTCC
GGGCCTGTGAAGACTTTCGCGTGAGATTGTTGAGACACCAGGTGGAATCA
CGCACATTGAGTGACGGTCTCGACAGCGAGAAGGAAGGAAGGACGAGGCC
AGAAAGGCAAGGAGGGCTGACCACGTGCAGCCCTCTAAACATCCAGCAGA
GGTTCTTCGGGCCCGGTCCATGGAGCCCGGTGTATTGAGAAGGAGGGAAA
CGAGGATGGGCATGCGGGAGCGGCGTTTACGTCGGCCTCGAATGAGTAAG
TGAACATTAATGCTTTCGATACTGCAAGCCTGCAGTTGTTCCCGTAGGCA
TGATCGCACCAAGCATTGTTATTTCTTTTGCCTCGCCTTGCCGATTCGAA
AGGTGCTTTTCGACAGTAGCGCCCCGTTTGACTTGAACGGTCGCTGTAAA
AAAGAACTTTCCTTCCC

protein sequence of rna93

>rna93-protein ID=rna93-protein|Name=rna93|organism=Nannochloropsis gaditana|type=polypeptide|length=679bp
MVKKKGKSKRVTFKQKYKIERRVKEHKRKTKKETRRRAKLGLPPLGIGQR
KKEVSIPNAWPFKEQLLEELATAKRNKEAEDAKKKEEAALRRKQKGLVGK
DVADLVTQAAAAQATFASQGPGTLSLEENGVNDMKALGQQSRRAFIRDLK
EVVEQADVVLEVLDARDPLGSRGEGVEELILRKPNKKLVLVLNKVDLVPR
EVVGAWLAYLRRFHPTVAFKSATQEQRVQLAQHGGDASKAGANLLSRSGS
VGAEALLQLLKNYSRSLDIKTSISVGVVGYPNVGKSSLINSLKRTKAAGV
SSTPGFTRCMQEVQLDKHIKLLDSPGIVFDDSDVEGVLLRNCVKVDSLPD
PSAAVGALLQRCEAQDLMMIYALPAFDATDVQGFLALLARKMGKLLRGGV
PDRTAAARVLLQDWNTGKVPFYTKPPPLPSSRVDEEAQLVGSLGTAFEVG
SVLEEGDAKVMAYLEEGGEGGVGDGNFVAFESGGVAGRRVGLGLSEGRQG
ELGDEEDLEMAEGDAEDGEEEEEEEEEEEEEEEEEEIMEVSEAPVSRLRT
SRRGTRRQDAGKVSTREGEKMKTEAGQGELKKKGRMTDRGSTASGKSAQG
EGARRKERTKRSLSNQSEAVSMAMALDDAKGDGLNVQINQTARKKMVAER
KKARKLTRRAGGTGATAMDADYDFATDFV

mRNA from alignment at CM002455.1:255434..257562-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna93 ID=rna93|Name=rna93|organism=Nannochloropsis gaditana|type=mRNA|length=2129bp|location=Sequence derived from alignment at CM002455.1:255434..257562- (Nannochloropsis gaditana)
ATGGTCAAGAAAAAGGGAAAATCCAAGCGTGTGACATTCAAACAGAAGTA
CAAGATCGAACGACGGGTAAAAGAACACAAGCGCAAGACTAAGAAAGAAA
CACGGCGCCGGGCCAAGCTCGGTCTTCCTCCTCTCGGGATTGGGCAACGC
AAGAAGGAAGTGAGCATTCCCAACGCCTGGCCGTTCAAAGAACAGCTTCT
CGAGGAGCTCGCGACGGCCAAACGGAACAAGGAAGCGGAGGACGCCAAGA
AGAAGGAGGAAGCGGCGTTGCGACGGAAGCAGAAAGGTTTGGTAGGAAAA
GACGTGGCAGACTTGGTGACGCAGGCGGCCGCGGCCCAGGCCACCTTTGC
CTCCCAAGGGCCCGGCACGCTTTCCCTGGAAGAAAATGGCGTGAACGACA
TGAAAGCTTTGGGGCAACAGAGCCGACGGGCATTTATCCGGGATTTGAAA
GAAGTGGTGGAGCAGGCCGACGTGGTCCTGGAGGTCCTGGACGCCCGAGA
CCCGTTGGGTTCCCGGGGGGAGGGGGTGGAGGAACTGATCCTCCGAAAGC
CGAACAAGAAACTAGTCCTAGTCCTGAACAAGGTCGACCTGGTGCCAAGG
GAAGTGGTGGGGGCGTGGCTGGCCTACCTTCGCCGTTTCCATCCCACCGT
GGCTTTTAAATCCGCCACCCAGGAGCAACGGGTGCAGCTCGCCCAGCACG
GTGGGGACGCGTCCAAGGCAGGGGCCAACCTCCTCTCCCGCAGTGGCTCC
GTGGGCGCCGAGGCTTTGCTGCAGCTTTTGAAAAACTACTCGCGGTCCCT
GGACATCAAAACCTCCATCAGCGTGGGCGTGGTGGGCTACCCCAACGTGG
GGAAATCCTCCCTCATCAACTCCCTGAAACGGACCAAGGCGGCCGGCGTC
TCCTCGACCCCCGGATTCACCCGCTGCATGCAGGAAGTGCAGTTGGACAA
GCACATCAAACTGTTGGACTCCCCGGGCATTGTGTTCGACGATTCGGACG
TGGAGGGGGTTCTCCTTCGGAATTGCGTGAAGGTAGACAGCCTCCCGGAC
CCCTCCGCGGCCGTGGGCGCGCTCTTGCAACGCTGCGAGGCTCAGGACTT
GATGATGATATACGCCTTGCCCGCCTTCGACGCCACCGACGTCCAAGGCT
TCCTGGCCCTGCTGGCTCGGAAGATGGGGAAGCTCTTGAGGGGGGGGGTC
CCGGACCGGACGGCGGCGGCGCGGGTCTTGCTCCAAGATTGGAACACGGG
CAAGGTCCCTTTCTACACGAAGCCGCCGCCTCTGCCCTCGTCCCGGGTGG
ACGAGGAAGCGCAATTGGTGGGCTCGTTGGGCACTGCTTTCGAGGTCGGC
TCGGTGTTGGAGGAGGGCGATGCCAAGGTGATGGCTTATCTGGAAGAAGG
GGGGGAGGGCGGGGTAGGGGACGGGAATTTTGTCGCCTTTGAGAGTGGTG
GGGTGGCGGGGAGGAGGGTGGGTCTGGGATTGAGTGAAGGGAGACAAGGG
GAACTGGGGGACGAGGAGGACCTGGAAATGGCCGAGGGGGATGCAGAGGA
TGGAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAGG
AGGAGGAGATTATGGAGGTGAGCGAGGCCCCTGTGTCTCGGCTCCGGACC
TCCAGGCGCGGGACGAGGCGGCAGGACGCAGGCAAAGTGTCAACACGAGA
GGGGGAGAAGATGAAGACGGAAGCGGGCCAGGGGGAGCTGAAAAAGAAAG
GTCGCATGACAGACAGAGGGTCAACGGCCTCAGGAAAATCCGCTCAGGGC
GAAGGGGCACGAAGGAAGGAGAGAACGAAACGGAGTCTTTCCAATCAAAG
TGAGGCGGTGAGTATGGCTATGGCATTGGATGATGCGAAAGGGGATGGCT
TGAATGTCCAGATAAATCAAACAGCCAGGAAGAAAATGGTAGCGGAGAGG
AAGAAAGCTCGCAAGCTGACTCGACGGGCGGGGGGGACCGGGGCGACCGC
TATGGACGCAGACTATGATTTTGCAACTGACTTCGTGTGATGATGGCGTG
AATTTGTTCGTAGTGCTAGGATCATGATATACAAAGAAAAGTCGATGAAA
AAGTACATACCAAAATGAGCGGACATTCA

Coding sequence (CDS) from alignment at CM002455.1:255434..257562-

>rna93 ID=rna93|Name=rna93|organism=Nannochloropsis gaditana|type=CDS|length=2040bp|location=Sequence derived from alignment at CM002455.1:255434..257562- (Nannochloropsis gaditana)
ATGGTCAAGAAAAAGGGAAAATCCAAGCGTGTGACATTCAAACAGAAGTA
CAAGATCGAACGACGGGTAAAAGAACACAAGCGCAAGACTAAGAAAGAAA
CACGGCGCCGGGCCAAGCTCGGTCTTCCTCCTCTCGGGATTGGGCAACGC
AAGAAGGAAGTGAGCATTCCCAACGCCTGGCCGTTCAAAGAACAGCTTCT
CGAGGAGCTCGCGACGGCCAAACGGAACAAGGAAGCGGAGGACGCCAAGA
AGAAGGAGGAAGCGGCGTTGCGACGGAAGCAGAAAGGTTTGGTAGGAAAA
GACGTGGCAGACTTGGTGACGCAGGCGGCCGCGGCCCAGGCCACCTTTGC
CTCCCAAGGGCCCGGCACGCTTTCCCTGGAAGAAAATGGCGTGAACGACA
TGAAAGCTTTGGGGCAACAGAGCCGACGGGCATTTATCCGGGATTTGAAA
GAAGTGGTGGAGCAGGCCGACGTGGTCCTGGAGGTCCTGGACGCCCGAGA
CCCGTTGGGTTCCCGGGGGGAGGGGGTGGAGGAACTGATCCTCCGAAAGC
CGAACAAGAAACTAGTCCTAGTCCTGAACAAGGTCGACCTGGTGCCAAGG
GAAGTGGTGGGGGCGTGGCTGGCCTACCTTCGCCGTTTCCATCCCACCGT
GGCTTTTAAATCCGCCACCCAGGAGCAACGGGTGCAGCTCGCCCAGCACG
GTGGGGACGCGTCCAAGGCAGGGGCCAACCTCCTCTCCCGCAGTGGCTCC
GTGGGCGCCGAGGCTTTGCTGCAGCTTTTGAAAAACTACTCGCGGTCCCT
GGACATCAAAACCTCCATCAGCGTGGGCGTGGTGGGCTACCCCAACGTGG
GGAAATCCTCCCTCATCAACTCCCTGAAACGGACCAAGGCGGCCGGCGTC
TCCTCGACCCCCGGATTCACCCGCTGCATGCAGGAAGTGCAGTTGGACAA
GCACATCAAACTGTTGGACTCCCCGGGCATTGTGTTCGACGATTCGGACG
TGGAGGGGGTTCTCCTTCGGAATTGCGTGAAGGTAGACAGCCTCCCGGAC
CCCTCCGCGGCCGTGGGCGCGCTCTTGCAACGCTGCGAGGCTCAGGACTT
GATGATGATATACGCCTTGCCCGCCTTCGACGCCACCGACGTCCAAGGCT
TCCTGGCCCTGCTGGCTCGGAAGATGGGGAAGCTCTTGAGGGGGGGGGTC
CCGGACCGGACGGCGGCGGCGCGGGTCTTGCTCCAAGATTGGAACACGGG
CAAGGTCCCTTTCTACACGAAGCCGCCGCCTCTGCCCTCGTCCCGGGTGG
ACGAGGAAGCGCAATTGGTGGGCTCGTTGGGCACTGCTTTCGAGGTCGGC
TCGGTGTTGGAGGAGGGCGATGCCAAGGTGATGGCTTATCTGGAAGAAGG
GGGGGAGGGCGGGGTAGGGGACGGGAATTTTGTCGCCTTTGAGAGTGGTG
GGGTGGCGGGGAGGAGGGTGGGTCTGGGATTGAGTGAAGGGAGACAAGGG
GAACTGGGGGACGAGGAGGACCTGGAAATGGCCGAGGGGGATGCAGAGGA
TGGAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAGG
AGGAGGAGATTATGGAGGTGAGCGAGGCCCCTGTGTCTCGGCTCCGGACC
TCCAGGCGCGGGACGAGGCGGCAGGACGCAGGCAAAGTGTCAACACGAGA
GGGGGAGAAGATGAAGACGGAAGCGGGCCAGGGGGAGCTGAAAAAGAAAG
GTCGCATGACAGACAGAGGGTCAACGGCCTCAGGAAAATCCGCTCAGGGC
GAAGGGGCACGAAGGAAGGAGAGAACGAAACGGAGTCTTTCCAATCAAAG
TGAGGCGGTGAGTATGGCTATGGCATTGGATGATGCGAAAGGGGATGGCT
TGAATGTCCAGATAAATCAAACAGCCAGGAAGAAAATGGTAGCGGAGAGG
AAGAAAGCTCGCAAGCTGACTCGACGGGCGGGGGGGACCGGGGCGACCGC
TATGGACGCAGACTATGATTTTGCAACTGACTTCGTGTGA

Synonyms

Publications