rna9298, rna9298 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9298
Unique Name	rna9298
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1371
Alignment location	KK037252.1:310292..312454 +

Link to JBrowse

Properties


Property Name	Value
Product	lysine-ketoglutarate reductase saccharopine dehydrogenase bifunctional enzyme
Orig transcript id	gnl\|cribi\|Naga_100682g3.10540.mrna
Orig protein id	gnl\|cribi\|Naga_100682g3.10540
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:310292..312454 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100682g3	gene9016	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9298	rna9298-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21404.1	cds9268	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:310292..312454+
coding sequence from alignment at KK037252.1:310292..312454+

mRNA sequence

>rna9298 ID=rna9298|Name=rna9298|organism=Nannochloropsis gaditana|type=mRNA|length=1371bp
TTAAAATAACTCTTCCTATCGTGCACCATCACTCCTTTCATCATCAAAAT
TGATAGCATGTACAATGCTCGATCAAGTACACTGATCCGGCGTTTTTGGG
GGCAAACGAAAATAGACTTCGCCTTGAAGACACGGGCTGATCCTGCATCA
CAGGGCGATACCCATATAGTCTTCTATCGTCCACGAAACTTCCACGCCTC
GACTTCAAATATAAAGCTATATCCCTCTCACAGTGTCTGTCGATCACTGA
ACACTCATCCCTTCCGAATGCGATATGCGTCATCTACGGCCTCTGCCCGC
GCCTTCCCCGACCCTCGCACCATTGGCATCGTCCGGGAGACCTTTGGAAA
GTGGGAGCGCCGGGCCCCCCTGGCACCCAAACACGTCCAGGCTTTAGCCC
AAAAAGGTATTAAAGTCCTTGTGCAGCCTTCGTTTCGAAGGGCCTACCCT
GACTCGGCCTATGCGGCCGCAGGAGCCAGCATCCAAGAAGATTTGTTGCC
GGCCTCTCTCATATTGGGAGTGAAACAGGTGCCAGTATCCGCTTTGCTAC
CGGAACGGACGTATATGATGTTCGCACACGTCCTGAAAGGTCAATTGGAG
AACATGCCTTTGCTTGACGCCATCCGTCGCTTAAAGATCCGCCTGTTGGA
CTATGAATGCATCACAGAGACCGGGGATCGGGGGGGGGCGCGCACGGTCT
TTTTCGGCCGCTTTGCCGGCATGGCGGGGATGGTGGACATCTTGCAAGGC
CTTGGGCAGAATTTGTTGGCCCGCGGCTACAACACGCCTTTCTTGAACTC
CCCCTACACGTACATGCACCCGGGCCTGGATGCAGCTAAGGCGGGCGTGC
GCGCGTTGGGGGGAAAAGTGGCCACGGAGGGCTTGCCAAGGGAAATATGT
CCGCTGGTAGTGGCTTTTACGGGGCGGGGACGGGTTGCACAGGGGGCTCA
AGAGGTGTTTGAGCTCTTGCCGCACGAGTGGGTGGAGGTAAAGGACCTTC
CGGCGTTGGTCGCGTCGGCACAGGGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAAAGGCCTTGCAGCGGAAAGTGTATGGGGTGCGGGTGGAAGAGAA
GGACATGGTGGAAAGGATGTCGACAGAGCAAGCTGTTCCTCAAGCGTCCG
TCCAGAGCATCGATCCTCCCACCCCGTCCTCGTCCCCCTCGTACGCCCGG
GACGAATACCGCCTCCACCCCGAACGGTACCGGCCCATATTCCACGAGCG
CGTGGCTCCCTACGTCTCTGTACTGGTGAATGGGATCTACTGGGATCAAC
GCTACCCGCGCTTGCTGACCAAGGCGCAGATGAAGGAGTTGTGGCATTCA
GGTCTCAAGGGAGGCGGGAGG

protein sequence of rna9298

>rna9298-protein ID=rna9298-protein|Name=rna9298|organism=Nannochloropsis gaditana|type=polypeptide|length=626bp
SSPAPSPAWPHTALSLRGHLFDTGLINQVLDVVEARGGAFAIGQCEVRPN
REQGWQKEISTVLLEVEAPTQRELEEIVRRVRGLADLMEAAVATVTEMKP
PSPPISVTSSTPPSSPSPSPSASQPQATVDSPRRVLVLGAGRVSGPAVDY
LSRRHQVTVVGTSPEELTRLQARKGDPRPDGGSGGRMHQGLVLDVVGETE
GVKKLVAGTDVVLSLLPASMHVDIARACLACRKPLVTTSYVSEALKDMDA
AAAAQGLVFLNEVGLDPGMDHASAMRIIDRVKAEGGRVHSFRSVCGGLPA
PGVAAKTPFLYKYSWSPRGVLTAAENPALYREGGREVKVPGEALLRHAVP
CPPDAFPTLRLEVLPNRDSLKYQALYGIEDAETCFRGTLRYEGWGDLMAG
CQALGLTARSPVPSTCTSITTYLRELWGEEDGDGWERGAGRRLAAAGVKN
PGRVIRALAWLEGHGGDAMPATQPWADQTSVIDAFSTLLEERLQYGPSEV
DMVAMRHDVVVSGGRRKPGTAEGKEEMGGKMHLYHHTSNLLIFGDEKDSA
MSVTVGKTAGVATELVLAGTLQRDNVVGVRVPTIPAIYTPLLDGLAKEGI
VFKEDCQAVAGRGEEDERERDSVFLE

mRNA from alignment at KK037252.1:310292..312454+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9298 ID=rna9298|Name=rna9298|organism=Nannochloropsis gaditana|type=mRNA|length=2163bp|location=Sequence derived from alignment at KK037252.1:310292..312454+ (Nannochloropsis gaditana)
tcctcccctgccccctcccccgcctggccgCACACGGCACTATCCTTGCG
CGGACACCTCTTTGACACGGGTTTGATCAACCAGGTCCTGGACGTGGTCG
AGGCCCGAGGGGGCGCCTTTGCCATTGGCCAGTGCGAGGTCCGTCCGAAC
CGGGAACAGGGCTGGCAGAAGGAAATTTCGACCGTGctcctggaggtgga
ggcgccgACTCAAAGGGAGCTCGAGGAGATTGTGCGGAGGGTCCGGGGCC
TGGCAGACTTAATGGAGGCCGCGGTGGCGACCGTCACGGAGATgaagcct
ccctctccccccattTCCGTGACAtcttccacccccccttcctccccctc
cccctccccctctgcctcccagCCCCAGGCTACGGTCGACTCCCCCCGTC
GAGTCCTCGTCCTGGGAGCCGGTCGCGTGAGTGGCCCTGCTGTGGACTAT
CTGAGCCGACGACACCAGGTGACCGTGGTGGGGACAAGCCCGGAGGAGTT
GACCCGCCTGCAAGCACGTAAGGGAGACCCCCGCcccgacggagggagcg
ggggaagaATGCACCAGGGCCTGGTTTTGGACGTGGTCGGGGAAACGGAA
GGCGTGAAAAAACTCGTGGCGGGGACCGACGTGGtcctctccttgctccc
tgCTTCCATGCACGTCGACATTGCCCGGGCCTGCCTGGCCTGTCGGAAAC
CCctcgtcaccacctcctACGTCTCCGAGGCCCTCAAAGACatggacgcg
gcggcggcggctcaGGGCCTGGTCTTTTTGAACGAGGTCGGGCTCGATCC
AGGCATGGACCACGCGAGTGCCATGCGCATCATCGACAGGgtcaaggcgg
agggcgggcgggtccACAGCTTCCGCTCCGTCTGCGGCGGTCTCCCCGCG
CCCGGCGTGGCCGCCAAGACGCCTTTCCTCTACAAGTACTCGTGGAGCCC
CCGCGGGGTCTTGACGGCGGCCGAGAACCCGGCCCTgtacagggagggcg
ggagggaggtcaaggTTCCCGGCgaggccctcctccgccacgcggTGCCT
TGTCCCCCGGACGCTTTCCCCACCCTCCGGCTGGAGGTCTTGCCCAACCG
GGATTCGCTCAAATACCAGGCGCTCTACGGGATTGAGGACGCCGAGACCT
GTTTCCGAGGCACGCTGCGGTacgagggatggggggactTGATGGCCGGC
TGTCAAGCCTTGGGTCTCACGGCCCGCTCCCCCGTGCCCTCCACGTGCAC
GTCCATAACGACGTACCTGAGGGAGTTgtggggcgaggaagatggtgacg
ggtgggagagaggggcaggcCGGCGCCTGGCCGCGGCAGGGGTAAAAAAT
CCGGGTAGGGTGATACGAGCCTTGGCGTGGCTGGAGGGGCATGGGGGAGA
TGCCATGCCCGCGACGCAGCCGTGGGCAGATCAGACGAGCGTCATAGATG
CCTTTTCGACGTTGCTGGAGGAGCGATTGCAGTATGGGCCGTCGGAAGTG
GACATGGTAGCCATGCGGCATGACGTCGTTGtcagcggggggaggaggaa
gccaggCACcgcagaagggaaggaggaaatgggaggaaaaatgcatTTGT
ACCATCACACGTCGAACTTGTTGATATTcggggacgagaaggacaGCGCC
ATGAGCGTGACGGTCGGTAAAACTGCCGGGGTGGCCACTGAACTGGTCTT
GGCGGGTACGCTTCAGAGGGACAATGTTGTCGGGGTCCGCGTCCCGACAA
TCCCCGCTATTTACACACCCCTTCTAGATGGGttggcgaaggaaggaatc
gTGTTTAAAGAGGATTGTCAAGCGGTagctgggagaggggaggaagatga
aagggagagggacagcGTGTTTTTGGAGTGACAGAATGTCAAAGTTCCAC
ttaaaagggaagaagaagcccaAATTATTCAACCTGTATGTATAGGTAAC
GCTTTTATATACTGGGTGTACAGGCATACAAAGCTGTTGGGGTAAGTTGA
GGCAAATGTGGAAGTCTCTCGCCTTACGAGCCCTTCTTAGGAATAGAAGT
TAGGCCTGGCCAGCTGAGGGGTGATGAACAAGTGGCATTCGGAGAGACTT
CAGAAGAATTTTATTCTAGATTAGGGGAGCCAATAGCAACCAAATTTGGA
TTTCCCCCCTCGA

Coding sequence (CDS) from alignment at KK037252.1:310292..312454+

>rna9298 ID=rna9298|Name=rna9298|organism=Nannochloropsis gaditana|type=CDS|length=1881bp|location=Sequence derived from alignment at KK037252.1:310292..312454+ (Nannochloropsis gaditana)
tcctcccctgccccctcccccgcctggccgCACACGGCACTATCCTTGCG
CGGACACCTCTTTGACACGGGTTTGATCAACCAGGTCCTGGACGTGGTCG
AGGCCCGAGGGGGCGCCTTTGCCATTGGCCAGTGCGAGGTCCGTCCGAAC
CGGGAACAGGGCTGGCAGAAGGAAATTTCGACCGTGctcctggaggtgga
ggcgccgACTCAAAGGGAGCTCGAGGAGATTGTGCGGAGGGTCCGGGGCC
TGGCAGACTTAATGGAGGCCGCGGTGGCGACCGTCACGGAGATgaagcct
ccctctccccccattTCCGTGACAtcttccacccccccttcctccccctc
cccctccccctctgcctcccagCCCCAGGCTACGGTCGACTCCCCCCGTC
GAGTCCTCGTCCTGGGAGCCGGTCGCGTGAGTGGCCCTGCTGTGGACTAT
CTGAGCCGACGACACCAGGTGACCGTGGTGGGGACAAGCCCGGAGGAGTT
GACCCGCCTGCAAGCACGTAAGGGAGACCCCCGCcccgacggagggagcg
ggggaagaATGCACCAGGGCCTGGTTTTGGACGTGGTCGGGGAAACGGAA
GGCGTGAAAAAACTCGTGGCGGGGACCGACGTGGtcctctccttgctccc
tgCTTCCATGCACGTCGACATTGCCCGGGCCTGCCTGGCCTGTCGGAAAC
CCctcgtcaccacctcctACGTCTCCGAGGCCCTCAAAGACatggacgcg
gcggcggcggctcaGGGCCTGGTCTTTTTGAACGAGGTCGGGCTCGATCC
AGGCATGGACCACGCGAGTGCCATGCGCATCATCGACAGGgtcaaggcgg
agggcgggcgggtccACAGCTTCCGCTCCGTCTGCGGCGGTCTCCCCGCG
CCCGGCGTGGCCGCCAAGACGCCTTTCCTCTACAAGTACTCGTGGAGCCC
CCGCGGGGTCTTGACGGCGGCCGAGAACCCGGCCCTgtacagggagggcg
ggagggaggtcaaggTTCCCGGCgaggccctcctccgccacgcggTGCCT
TGTCCCCCGGACGCTTTCCCCACCCTCCGGCTGGAGGTCTTGCCCAACCG
GGATTCGCTCAAATACCAGGCGCTCTACGGGATTGAGGACGCCGAGACCT
GTTTCCGAGGCACGCTGCGGTacgagggatggggggactTGATGGCCGGC
TGTCAAGCCTTGGGTCTCACGGCCCGCTCCCCCGTGCCCTCCACGTGCAC
GTCCATAACGACGTACCTGAGGGAGTTgtggggcgaggaagatggtgacg
ggtgggagagaggggcaggcCGGCGCCTGGCCGCGGCAGGGGTAAAAAAT
CCGGGTAGGGTGATACGAGCCTTGGCGTGGCTGGAGGGGCATGGGGGAGA
TGCCATGCCCGCGACGCAGCCGTGGGCAGATCAGACGAGCGTCATAGATG
CCTTTTCGACGTTGCTGGAGGAGCGATTGCAGTATGGGCCGTCGGAAGTG
GACATGGTAGCCATGCGGCATGACGTCGTTGtcagcggggggaggaggaa
gccaggCACcgcagaagggaaggaggaaatgggaggaaaaatgcatTTGT
ACCATCACACGTCGAACTTGTTGATATTcggggacgagaaggacaGCGCC
ATGAGCGTGACGGTCGGTAAAACTGCCGGGGTGGCCACTGAACTGGTCTT
GGCGGGTACGCTTCAGAGGGACAATGTTGTCGGGGTCCGCGTCCCGACAA
TCCCCGCTATTTACACACCCCTTCTAGATGGGttggcgaaggaaggaatc
gTGTTTAAAGAGGATTGTCAAGCGGTagctgggagaggggaggaagatga
aagggagagggacagcGTGTTTTTGGAGTGA

Synonyms

Publications