rna9297, rna9297 (mRNA) Nannochloropsis gaditana

Overview
Namerna9297
Unique Namerna9297
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1459
Alignment locationKK037252.1:308820..310190 +

Link to JBrowse

Properties
Property NameValue
Productlysine-ketoglutarate reductase saccharopine dehydrogenase bifunctional enzyme
Orig transcript idgnl|cribi|Naga_101166g2.1296.mrna
Orig protein idgnl|cribi|Naga_101166g2.1296
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:308820..310190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101166g2gene9015Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9297rna9297-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21406.1cds9267Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9297 ID=rna9297|Name=rna9297|organism=Nannochloropsis gaditana|type=mRNA|length=1459bp
CAGTTTCCGAGGCTTCATATAGGAAGTTTCACTCACGCGTTGATTTTTGC
GTTTTCCACCCCCAACAGTACCCCAGTAACGAGACAGTGCATCGAAAATC
ACGTGTCTCGACTGTGCTGTCGTTCGTCTTTCTAATGGGAGTTTAGGCGT
ACCGCTTATAGAGAAGGACCGAGACTCCCGCGGTTGGTGTCAGCCTCCGG
AATACCCGCCACTGCATTCGTTTCAATCGTGCACTTGACACCAACCCCAA
ATTGAAAGTACACGCGAAATATGACCAACAGCGGTTTGGACGACCAAAAC
GCATCAACTTGTATCTTGCCGTCCTCGGTGTTACGGTTGCGAGCATCCGA
TGTGGCTAGCCGGGCCTGGCTCACGCCTGTGTGCTCTGACACAGTCATGT
GGGAGAACGATGCTGGGATGGGGCTAAACTTGCCCAAAATGGACGATGCG
GTGTCGCATGCCTCAGACGGGCAATTTTCAGGAATACGACAGGCTCCAAA
GGGACCTTCGTATTCCTTTGCGGCCGATTTGAACGCCCGTGGGACCGAGA
GGGAGGCAGCAGCATTCACCCCAGGCGTGTCCCTTGGCTCCCACAAGGCC
CGGGGTCAACGAAAGTTTCACGACAAACACGACCAGCAACATGAGAGCAC
CATGCAGCACACGCACCAACTCTCTTGGAGAGACGCGTCTCCACCCGTGC
CTCCTCCCTCCCCTTCCTCTCGACCGTACCCCGCCCCGCGGCCCCGGTCC
ACACTTTCGCGCAACTTTCGCAGGCAAAAATCCTCAAGCTGCGGCGACAT
GACCAATCTACTCGTGCCAGTCCTTGACTCCGCCTTATCCACCAACGGCT
CCCCCTGCATCCCACGTGTGCCAGCCCTATCTCAGCACTCCCGCAGCGAC
ACCCATGACTCTCACGGCGCTCCTACAGGCGATCTCCCCAGCCCCCGGGG
CCTCGACAACCTTCCCAAGCGTGCCAACGCACCGGACTACCTGGGCCGTG
CTCGCGTTACGTCCGCAAAGGTATCCCTCTTCTCGCCCCCCACCTCGTCC
TCCTCCCTTGACCCGCCCTCCCCCCCGCCCTCCCCCCCGCCCTCCTCCCC
GTCCCGCAACCGGGCCAGTCGGCTCAATGGCGAGAGGAAAGGCGGCAGCA
GCCGTCACAAACGAGAACTCCAGAAGGCATCCGTCGTCAACGAGCTCAGT
CACGCGGCCGCCCTCCTCCTTATCCCCTCCCTCCTCCCCCCTTCCTCTTC
CCCTCCTTCCTCCTCCCCTCCCCCCCTTCCCGACATGAGGGTTCTTCAGG
ACCTAGTCCATGCCGTCCGCCTCCACCTTTCTCGCTTCCCCCTCCGCTAT
TGTCTGGCGGTGGAGGCACGTGAGGTCCTCCAACACATGTCGCTCCTCCA
ACAAGCTACCCGGACTGACCGCGTTGCCATCCATGTGGAGGAGCAGCCTT
GGGGAGACA
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protein sequence of rna9297

>rna9297-protein ID=rna9297-protein|Name=rna9297|organism=Nannochloropsis gaditana|type=polypeptide|length=438bp
MYNARSSTLIRRFWGQTKIDFALKTRADPASQGDTHIVFYRPRNFHASTS
NIKLYPSHSVCRSLNTHPFRMRYASSTASARAFPDPRTIGIVRETFGKWE
RRAPLAPKHVQALAQKGIKVLVQPSFRRAYPDSAYAAAGASIQEDLLPAS
LILGVKQVPVSALLPERTYMMFAHVLKGQLENMPLLDAIRRLKIRLLDYE
CITETGDRGGARTVFFGRFAGMAGMVDILQGLGQNLLARGYNTPFLNSPY
TYMHPGLDAAKAGVRALGGKVATEGLPREICPLVVAFTGRGRVAQGAQEV
FELLPHEWVEVKDLPALVASAQGEGGREGGREGKALQRKVYGVRVEEKDM
VERMSTEQAVPQASVQSIDPPTPSSSPSYARDEYRLHPERYRPIFHERVA
PYVSVLVNGIYWDQRYPRLLTKAQMKELWHSGLKGGGR
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mRNA from alignment at KK037252.1:308820..310190+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9297 ID=rna9297|Name=rna9297|organism=Nannochloropsis gaditana|type=mRNA|length=1371bp|location=Sequence derived from alignment at KK037252.1:308820..310190+ (Nannochloropsis gaditana)
ttaaaataacTCTTCCTATCGTGCACCATCACTCCTTTCATCATCAAAAT
TGATAGCATGTACAATGCTCGATCAAGTACACTGATCCGGCGTTTTTGGG
GGCAAACGAAAATAGACTTCGCCTTGAAGACACGGGCTGATCCTGCATCA
CAGGGCGATACCCATATAGTCTTCTATCGTCCACGAAACTTCCACGCCTC
GACTTCAAATATAAAGCTATATCCCTCTCACAGTGTCTGTCGATCACTGA
ACACTCATCCCTTCCGAATGCGATATGCGTCATCTACGGCCTCTGCCCGC
GCCTTCCCCGACCCTCGCACCATTGGCATCGTCCGGGAGACCTTTGGAAA
GTGGGAGCGCCGGGCCCCCCTGGCACCCAAACACGTCCAGGCTTTAGCCC
AAAAAGGTATTAAAGTCCTTGTGCAGCCTTCGTTTCGAAGGGCCTACCCT
GACTCGGCCTATGCGGCCGCAGGAGCCAGCATCCAAGAAGATTTGTTGCC
GGCCTCTCTCATATTGGGAGTGAAACAGGTGCCAGTATCCGCTTTGCTAC
CGGAACGGACGTATATGATGTTCGCACACGTCCTGAAAGGTCAATTGGAG
AACATGCCTTTGCTTGACGCCATCCGTCGCTTAAAGATCCGCCTGTTGGA
CTATGAATGCATCACAGAGACCGGGgatcgggggggggcgcgcaCGGTCT
TTTTCGGCCGCTTTGCCGGCATGGCGGGGATGGTGGACATCTTGCAAGGC
CTTGGGCAGAATTTGTTGGCCCGCGGCTACAACACGCCTTTCTTGAACTC
CCCCTACACGTACATGCACCCGGGCCTGGATGCAGCTAAGGCGGGCGTGC
GCGCGTTGGGGGGAAAAGTGGCCACGGAGGGCTTGCCAAGGGAAATATGT
CCGCTGGTAGTGGCTTTTacggggcggggacgggttGCACAGGGGGCTCA
AGAGGTGTTTGAGCTCTTGCCGCACGAGTGGGTGGAGGTAAAGGACCTTC
CGGCGTTGGTCGCGTCggcacagggggagggagggagggagggagggagg
gagggaaaggccttGCAGCGGAAAGTGTATGGGGTGcgggtggaagagaa
ggacatggTGGAAAGGATGTCGACAGAGCAAGCTGTTCCTCAAGCGTCCG
TCCAGAGCATcgatcctcccaccccgtcctcgtccccctcgtACGCCCGG
GACGAATaccgcctccaccccgaACGGTACCGGCCCATATTCCACGAGCG
CGTGGCTCCCTACGTCTCTGTACTGGTGAATGGGATCTACTGGGATCAAC
GCTACCCGCGCTTGCTGACCAAGGCGCAGATGAAGGAGTTGTGGCATTCA
GGTCtcaagggaggcgggagg
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Coding sequence (CDS) from alignment at KK037252.1:308820..310190+

>rna9297 ID=rna9297|Name=rna9297|organism=Nannochloropsis gaditana|type=CDS|length=1314bp|location=Sequence derived from alignment at KK037252.1:308820..310190+ (Nannochloropsis gaditana)
ATGTACAATGCTCGATCAAGTACACTGATCCGGCGTTTTTGGGGGCAAAC
GAAAATAGACTTCGCCTTGAAGACACGGGCTGATCCTGCATCACAGGGCG
ATACCCATATAGTCTTCTATCGTCCACGAAACTTCCACGCCTCGACTTCA
AATATAAAGCTATATCCCTCTCACAGTGTCTGTCGATCACTGAACACTCA
TCCCTTCCGAATGCGATATGCGTCATCTACGGCCTCTGCCCGCGCCTTCC
CCGACCCTCGCACCATTGGCATCGTCCGGGAGACCTTTGGAAAGTGGGAG
CGCCGGGCCCCCCTGGCACCCAAACACGTCCAGGCTTTAGCCCAAAAAGG
TATTAAAGTCCTTGTGCAGCCTTCGTTTCGAAGGGCCTACCCTGACTCGG
CCTATGCGGCCGCAGGAGCCAGCATCCAAGAAGATTTGTTGCCGGCCTCT
CTCATATTGGGAGTGAAACAGGTGCCAGTATCCGCTTTGCTACCGGAACG
GACGTATATGATGTTCGCACACGTCCTGAAAGGTCAATTGGAGAACATGC
CTTTGCTTGACGCCATCCGTCGCTTAAAGATCCGCCTGTTGGACTATGAA
TGCATCACAGAGACCGGGgatcgggggggggcgcgcaCGGTCTTTTTCGG
CCGCTTTGCCGGCATGGCGGGGATGGTGGACATCTTGCAAGGCCTTGGGC
AGAATTTGTTGGCCCGCGGCTACAACACGCCTTTCTTGAACTCCCCCTAC
ACGTACATGCACCCGGGCCTGGATGCAGCTAAGGCGGGCGTGCGCGCGTT
GGGGGGAAAAGTGGCCACGGAGGGCTTGCCAAGGGAAATATGTCCGCTGG
TAGTGGCTTTTacggggcggggacgggttGCACAGGGGGCTCAAGAGGTG
TTTGAGCTCTTGCCGCACGAGTGGGTGGAGGTAAAGGACCTTCCGGCGTT
GGTCGCGTCggcacagggggagggagggagggagggagggagggagggaa
aggccttGCAGCGGAAAGTGTATGGGGTGcgggtggaagagaaggacatg
gTGGAAAGGATGTCGACAGAGCAAGCTGTTCCTCAAGCGTCCGTCCAGAG
CATcgatcctcccaccccgtcctcgtccccctcgtACGCCCGGGACGAAT
accgcctccaccccgaACGGTACCGGCCCATATTCCACGAGCGCGTGGCT
CCCTACGTCTCTGTACTGGTGAATGGGATCTACTGGGATCAACGCTACCC
GCGCTTGCTGACCAAGGCGCAGATGAAGGAGTTGTGGCATTCAGGTCtca
agggaggcgggagg
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Synonyms
Publications