rna9292, rna9292 (mRNA) Nannochloropsis gaditana

Overview
Namerna9292
Unique Namerna9292
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length423
Alignment locationKK037252.1:297224..299147 +

Link to JBrowse

Properties
Property NameValue
Productlipoic acid synthetase
Orig transcript idgnl|cribi|Naga_100466g2.1608.mrna
Orig protein idgnl|cribi|Naga_100466g2.1608
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:297224..299147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100466g2gene9010Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9292rna9292-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21412.1cds9262Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9292 ID=rna9292|Name=rna9292|organism=Nannochloropsis gaditana|type=mRNA|length=423bp
ACCTTACAGGCAACGGTTTTACGGGGATCCAACTTCCAGCCCTGGGTGTG
TTGGGCTTGAGCATTCCAAAGGCTTTTCTCCCTTGTCCTTGACTGGACTT
TCCTAGGCGTAGCAGAATCGAAGCGTTGCTATCAATCGCACGGAGGGAAG
CATGGGCAAATGGCACCGGACCGGGCCATTGTCAGGTATGGACGCCCAAC
GCGCCATGCTCGACGAAATGATGGGCATGAATCGAAACTTGGACAACCCG
GATGCCGAAATTCAGGATTATCGCGACGAGCGCGTGTGCAAGCATTTCCT
CCTCGGATGCTGCCCGCACGACGTCTTCAGCAAGACCAAGATCGATCTGG
GGCAGTGTGAAGGCATGCACGATGAGGCACTCCAAGAACGCTTCCAGGCC
GACGTGAAGAAAGAGGAGGAGGA
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protein sequence of rna9292

>rna9292-protein ID=rna9292-protein|Name=rna9292|organism=Nannochloropsis gaditana|type=polypeptide|length=376bp
MGPPHQSRSFMFLRSVMSLCILLPGSIDAFAPSRLLLTSWGDQRPTISLN
TITMSTTEPRPPVVPKVGGPMPEGRRPDWFHVPAPGGSHTRFEELRESLR
ELDLHTVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVKTSQAPP
PADPFEPLKTAEAVARWGINYVVLTSVDRDDMPDGGADHFAQTVEYIKLR
KPEMLVECLVSDFRGDLAAVERLATSGLDVYAHNVETVERLQKYVRDKRA
SYTQSLQVLAHAKAAQPTVYTKTSLMLGLGEEEGEVLEAMRDMRAHNVDV
LTLGQYLRPTDHHLAVVEYVTPEKFDFFRKQGEEMGFKYVASGPLVRSSY
KAGEFFLENELKRVKAKRAAEQGAMA
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mRNA from alignment at KK037252.1:297224..299147+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9292 ID=rna9292|Name=rna9292|organism=Nannochloropsis gaditana|type=mRNA|length=1924bp|location=Sequence derived from alignment at KK037252.1:297224..299147+ (Nannochloropsis gaditana)
TAGGGCATCGGTGTCACTAAATAATTATATGAACACTGATTCTGGGCACA
CGATGGATCACAGGTGGTTTGATTTGCCTTGGAGGTTTGGTGTCCGTAAA
AGCGGCCTAGGACTGATTGCCACAGACCCCCCAGGGCGGCCGTCTCCTCA
CACACGTCATTGCCTCTGCCTGATCACAAGCCGCGACTTTTTGACAACAC
AACGCCGCCATTCCCATGGGCCCGCCGCATCAATCGCGCTCCTTCATGTT
TTTACGTAGCGTAATGTCCCTCTGTATTTTGCTTCCGGGGTCTATCGACG
CATTTGCGCCTTCCCGTCTCCTGCTGACCTCCTGGGGCGACCAACGGCCC
ACAATTTCACTGAACACAATAACGATGTCCACCACGGAACCCCGACCTCC
TGTCGTTCCCAAAGTCGGCGGTCCCATGCCGGAGGGGCGGCGTCCGGACT
GGTTCCATGTGCCGGCCCCAGGGGGCTCGCACACTCGTTTCGAGGAATTG
CGGGAGAGTTTGCGGGAGCTGGACTTGCACACCGTGTGCGAGGAAGCGCA
ATGTCCGAACATTGGGGAGTGTTGGAACGGAGGTACCGGCACCATTATGC
TTCTGGGGGACACGTGCACACGGTGAGTGGACGGGGGATATCGAGGCTTG
CGGGGGAAAGAACCTTCGTATGGCGCTCCGTTCTTTGGCGGCGCCAAGGA
AGGTGTCACGTGGTCGGTCCTGCGAACATGTCATCTGAACACGTAAAACA
TGAATTTAAACAAACGTTTTCTACGGGTTTCTACCCAAGAGCGccctcat
tcctcctccgtgcatcctgctccctccctcttgcctccaTCTTCGCCATA
ACCCTCATACCCCTTATGTATCTCTTGCCTTCCACTCCACCTATTTACCC
CAGCGGTTGCAAATTCTGCGCCGTAAAGACGTCCCAAGCCCCGCCTCCGG
CGGATCCATTCGAGCCACTCAAGACCGCCGAAGCAGTCGCCAGATGGGGT
ATCAATTATGTGGTGCTGACGAgtgtggaccgggacgaCATGCCCGACGG
AGGCGCCGACCATTTTGCCCAGACCGTCGAGTACATCAAACTCCGAAAAC
CGGAGATGTTGGTGGAGTGCTTGGTCAGTGACTTTCGGGGGGATTTGGCG
GCAGTGGAGCGCCTGGCTACCTCCGGGTTGGACGTCTACGCCCACAACGT
GGAGACGGTGGAGAGGCTGCAGAAATACGTACGGGACAAACGGGCGAGCT
ACACCCAGTCTTTGCAGGTCCTGGCGCATGCCAAGGCGGCTCAGCCCACG
GTATACACGAAGACGAGCCTGATGTtgggcctgggggaggaagaggggga
ggtcctCGAGGCGATGCGGGACATGCGGGCACACAACGTGGACGTGTTGA
CGCTGGGGCAATATTTGCGGCCCACGGACCACCACTTGGCTGTCGTCGAG
TACGTGACGCCCGAAAAATTCGATTTTTTTcggaagcagggggaggaaat
ggggtTCAAGTATGTGGCCAGCGGGCCGTTGGTCCGGTCCTCGTACAAAG
CAGGCGAGTTTTTCCTGGAAAATGAGCTGAAGAGGgtcaaggcgaagagg
gcagCTGAGCAAGGGGCGATGGCATGAAAGTAGGGATGGCTGTTGTACAG
GTAGCTGGCAAGGATGAAGGGGAGAGAATGAGCGCGGCAGGAGTAGGAGA
CGTAAGATTTTGCAGCATGAGTCCAGTGGAGCTGCCACCCATTATGAAGG
ACTGTTATTAGGGGCCGTTCAACAGCCTCCTTGGTGAGGGAGTAATGGCA
GGAGGGATGCGAGAGGAAACGATGAAGAGTGGCTGATGAGGTTGTTTGGA
CCGGCAATAAGGCAAATGAAGATAAACAGGAAAGGATGTCCAAACATGGC
AAAATTGCCGCCTTTAGTTTAATT
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Coding sequence (CDS) from alignment at KK037252.1:297224..299147+

>rna9292 ID=rna9292|Name=rna9292|organism=Nannochloropsis gaditana|type=CDS|length=2262bp|location=Sequence derived from alignment at KK037252.1:297224..299147+ (Nannochloropsis gaditana)
ATGGGCCCGCCGCATCAATCGCGCTCCTTCATGTTTTTACGTAGCGTAAT
GTCCCTCTGTATTTTGCTTCCGGGGTCTATCGACGCATTTGCGCCTTCCC
GTCTCCTGCTGACCTCCTGGGGCGACCAACGGCCCACAATTTCACTGAAC
ACAATAACGATGTCCACCACGGAACCCCGACCTCCTGTCGTTCCCAAAGT
CGGCGGTCCCATGCCGGAGGGGCGGCGTCCGGACTGGTTCCATGTGCCGG
CCCCAGGGGGCTCGCACACTCGTTTCGAGGAATTGCGGGAGAGTTTGCGG
GAGCTGGACTTGCACACCGTGTGCGAGGAAGCGCAATGTCCGAACATTGG
GGAGTGTTGGAACGGAGGTACCGGCACCATTATGCTTCTGGGGGACACGT
GCACACGCGGTTGCAAATTCTGCGCCGTAAAGACGTCCCAAGCCCCGCCT
CCGGCGGATCCATTCGAGCCACTCAAGACCGCCGAAGCAGTCGCCAGATG
GGGTATCAATTATGTGGTGCTGACGAgtgtggaccgggacgaCATGCCCG
ACGGAGGCGCCGACCATTTTGCCCAGACCGTCGAGTACATCAAACTCCGA
AAACCGGAGATGTTGGTGGAGTGCTTGGTCAGTGACTTTCGGGGGGATTT
GGCGGCAGTGGAGCGCCTGGCTACCTCCGGGTTGGACGTCTACGCCCACA
ACGTGGAGACGGTGGAGAGGCTGCAGAAATACGTACGGGACAAACGGGCG
AGCTACACCCAGTCTTTGCAGGTCCTGGCGCATGCCAAGGCGGCTCAGCC
CACGGTATACACGAAGACGAGCCTGATGTtgggcctgggggaggaagagg
gggaggtcctCGAGGCGATGCGGGACATGCGGGCACACAACGTGGACGTG
TTGACGCTGGGGCAATATTTGCGGCCCACGGACCACCACTTGGCTGTCGT
CGAGTACGTGACGCCCGAAAAATTCGATTTTTTTcggaagcagggggagg
aaatggggtTCAAGTATGTGGCCAGCGGGCCGTTGGTCCGGTCCTCGTAC
AAAGCAGGCGAGTTTTTCCTGGAAAATGAGCTGAAGAGGgtcaaggcgaa
gagggcagCTGAGCAAGGGGCGATGGCATGAATGGGCCCGCCGCATCAAT
CGCGCTCCTTCATGTTTTTACGTAGCGTAATGTCCCTCTGTATTTTGCTT
CCGGGGTCTATCGACGCATTTGCGCCTTCCCGTCTCCTGCTGACCTCCTG
GGGCGACCAACGGCCCACAATTTCACTGAACACAATAACGATGTCCACCA
CGGAACCCCGACCTCCTGTCGTTCCCAAAGTCGGCGGTCCCATGCCGGAG
GGGCGGCGTCCGGACTGGTTCCATGTGCCGGCCCCAGGGGGCTCGCACAC
TCGTTTCGAGGAATTGCGGGAGAGTTTGCGGGAGCTGGACTTGCACACCG
TGTGCGAGGAAGCGCAATGTCCGAACATTGGGGAGTGTTGGAACGGAGGT
ACCGGCACCATTATGCTTCTGGGGGACACGTGCACACGCGGTTGCAAATT
CTGCGCCGTAAAGACGTCCCAAGCCCCGCCTCCGGCGGATCCATTCGAGC
CACTCAAGACCGCCGAAGCAGTCGCCAGATGGGGTATCAATTATGTGGTG
CTGACGAgtgtggaccgggacgaCATGCCCGACGGAGGCGCCGACCATTT
TGCCCAGACCGTCGAGTACATCAAACTCCGAAAACCGGAGATGTTGGTGG
AGTGCTTGGTCAGTGACTTTCGGGGGGATTTGGCGGCAGTGGAGCGCCTG
GCTACCTCCGGGTTGGACGTCTACGCCCACAACGTGGAGACGGTGGAGAG
GCTGCAGAAATACGTACGGGACAAACGGGCGAGCTACACCCAGTCTTTGC
AGGTCCTGGCGCATGCCAAGGCGGCTCAGCCCACGGTATACACGAAGACG
AGCCTGATGTtgggcctgggggaggaagagggggaggtcctCGAGGCGAT
GCGGGACATGCGGGCACACAACGTGGACGTGTTGACGCTGGGGCAATATT
TGCGGCCCACGGACCACCACTTGGCTGTCGTCGAGTACGTGACGCCCGAA
AAATTCGATTTTTTTcggaagcagggggaggaaatggggtTCAAGTATGT
GGCCAGCGGGCCGTTGGTCCGGTCCTCGTACAAAGCAGGCGAGTTTTTCC
TGGAAAATGAGCTGAAGAGGgtcaaggcgaagagggcagCTGAGCAAGGG
GCGATGGCATGA
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Synonyms
Publications