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Properties
| Property Name | Value |
|---|
| Product | dna-directed rna polymerase ii subunit rpb11-a |
| Orig transcript id | gnl|cribi|Naga_100147g17.4607.mrna |
| Orig protein id | gnl|cribi|Naga_100147g17.4607 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037252.1 | supercontig | KK037252.1:289213..290634 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9288 ID=rna9288|Name=rna9288|organism=Nannochloropsis gaditana|type=mRNA|length=1066bp
TGCAAATGTCCCTCCGAAAGTAGCGACACACCATGACAGCCAGAGGCCGT
TTGGGGGGACGACCGGAATTTTTAATAAACACATCAGCATTTGCAATGTC
ATTTCCCTGAATACCGTCACAATCTGTTCGACATGCAAAGTTGACCAGGC
AAATTAGGGTTACTTTTTTCTTCACGTCCATCCTTTTCCTTCTTGGCAAC
TACAGCTCCTAGTGAGTAGCAGCGTTAGTCTGGTTCTCACCACCTTGGGG
TAGAGAGGCTCCTGCAGCATTCCAAAGCGCTTTCTCCACCATCCAGGCCT
TGAGAATACAACCAGTGTTACAGCATGAATGAGCCCAAACGAGCTGACTC
CTACCGCTTGTCCGAGGGCGAAAAGAAGTGCGAATGGAAAGACAGCGCGA
ATGAAAAAATGGCGAACTCAGGCACCCTTGTCATTAACAAGGAGGACCAC
ACGATGGGAAACCTGATCCGGATGCAGCTTTTGAGGGACAAACAGGTGAA
GTTCGCGGGGTACATTCACCCGCATCCCTTGATCCATAAGATCGAGCTGC
GAGTACAGACCCTGGACAGGGCGCTCTCTACGCCCATGCAGGTAGGGAGT
GAGGGAGTGAGGGAGTGAGGGAGGGAGGGAGGACTTGGGGGGAAGAAGGT
AGACGGACGGGAGGCAGGACGGCTTAGGGGTGCCTGGTGAGCAAGACGGA
CGCTTCCTGCGGGCGCCGGTTGTCTGCCCCCTGGCTTCCTGCCTCCCAAC
GCGTCTCTTTCCCTTCCCCCTCTTTCTTCTTTTCTCTTTCCTGCGTCCCA
CCCACCTCCTTTCCATGGTCCTCGCACGGGTCCAGGCCCTGGAGAACGCC
CTCTCCGATCTCAACCAAGAATTTACAGGGCTCAAGGCTCGCTTCCAACA
GGAAGTCCGACGGGTGCAGGCGGAGCAGGCGGATAGGGAGTACAGATAGA
AGCAAGGAGAGGGGAAGTGAGGGGGGGGAGCGAGGGACTTGTAAACAGGC
ACACGCACAAATGGCATTTAAATGCCCGTTTTTCGATCCAAAGCAAGAGA
CAACGATACTTGGAAT back to topprotein sequence of rna9288 >rna9288-protein ID=rna9288-protein|Name=rna9288|organism=Nannochloropsis gaditana|type=polypeptide|length=126bp
MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRM
QLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQALENALSDLNQ
EFTGLKARFQQEVRRVQAEQADREYR back to topmRNA from alignment at KK037252.1:289213..290634+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9288 ID=rna9288|Name=rna9288|organism=Nannochloropsis gaditana|type=mRNA|length=1422bp|location=Sequence derived from alignment at KK037252.1:289213..290634+ (Nannochloropsis gaditana)
ACACACCATGACAGCCAGAGGCCGTTTGGGGGGACGACCGGAATTTTTAA
TAAACACATCAGCATTTGCAATGTCATTTCCCTGAATACCGTCACAATCT
GTTCGACATGCAAAGTTGACCAGGCAAATTAGGGTTacttttttcttcac
gtccatccttttccttcttggcaACTACAGCTCCTAGTGAGTAGCAGCGT
TAGTCTGGTTCTCACCACCTTGGGGTAGAGAGGCTCCTGCAGCATTCCAA
AGCGCTTTCTCCACCATCCAGGCCTTGAGAATACAACCAGTGTTACAGCA
TGAATGAGCCCAAACGGTACGCGAACTGGAAAGCGAGGTCTTACCCAGTG
TTCGATGGAGAACGGACATCGTGGTGTTTAGAGGACCCGCAACAGCGCAT
TGAATGGCCTGTGGCACGTAGTGATTGGACCCTAGTCTACGTATACCTTT
CTATTCCCTCATGTTGCGCGGCGTCATTACGAATTTGCGACACTCACCGC
CGATGCACCACTCGCAAACATACACGCCTTGTACAGAGCTGACTCCTACC
GCTTGTCCGAGGGCGAAAAGAAGTACGTGGGGGGGTCGTAGCTATCTTGG
ATAGAGTTTTTCATCAATTTAATGTAAAGCATGTATGTGTCGCACTGAGC
GAAGGGAGTGGAATGCGGCGCCGGTTCAATAAGTACTCCACGCCGAGGAA
GTCATGTAcgcctccctgtctccttgcTTTCAGGTGCGAATGGAAAGACA
GCGCGAATGAAAAAATGGCGAACTCAGGCACCCTTGTCATTAACAAGGAG
GACCACACGATGGGAAACCTGATCCGGATGCAGCTTTTGAGGGACAAACA
GGTGAAGTTCGCGGGGTACATTCACCCGCATCCCTTGATCCATAAGATCG
AGCTGCGAGTACAGACCCTGGACAGGGCGCTCTCTACGCCCATGCAGGta
gggagtgagggagtgagggagtgagggagggagggaggacttggggggaa
gaaggtagACGGACGGGAGGCAGGACGGCTTAGGGGTGCCTGGTGAGCAA
GACGGACGCTTCCTGCGGGCGCCGGTTGTCTGCCCCCTggcttcctgcct
cccaacgcgtctctttcccttccccctctttcttcttttctctttcctgc
gTCCCACCCACCTCCTTTCCATGGTCCTCGCACGGGTCCAGGCCCTGGAG
AACGCCCTCTCCGATCTCAACCAAGAATTTACAGGGCTCAAGGCTCGCTT
CCAACAGGAAGTCCGACGGGTGCaggcggagcaggcggaTAGGGAGTACA
GATAgaagcaaggagaggggaagtgaggggggggagcgagggactTGTAA
ACAGGCACACGCACAAATGGCATTTAAATGCCCGTTTTTCGATCCAAAGC
AAGAGACAACGATACTTGGAAT back to topCoding sequence (CDS) from alignment at KK037252.1:289213..290634+ >rna9288 ID=rna9288|Name=rna9288|organism=Nannochloropsis gaditana|type=CDS|length=1524bp|location=Sequence derived from alignment at KK037252.1:289213..290634+ (Nannochloropsis gaditana)
ATGAATGAGCCCAAACGAGCTGACTCCTACCGCTTGTCCGAGGGCGAAAA
GAAGTGCGAATGGAAAGACAGCGCGAATGAAAAAATGGCGAACTCAGGCA
CCCTTGTCATTAACAAGGAGGACCACACGATGGGAAACCTGATCCGGATG
CAGCTTTTGAGGGACAAACAGGTGAAGTTCGCGGGGTACATTCACCCGCA
TCCCTTGATCCATAAGATCGAGCTGCGAGTACAGACCCTGGACAGGGCGC
TCTCTACGCCCATGCAGGCCCTGGAGAACGCCCTCTCCGATCTCAACCAA
GAATTTACAGGGCTCAAGGCTCGCTTCCAACAGGAAGTCCGACGGGTGCa
ggcggagcaggcggaTAGGGAGTACAGATAgATGAATGAGCCCAAACGAG
CTGACTCCTACCGCTTGTCCGAGGGCGAAAAGAAGTGCGAATGGAAAGAC
AGCGCGAATGAAAAAATGGCGAACTCAGGCACCCTTGTCATTAACAAGGA
GGACCACACGATGGGAAACCTGATCCGGATGCAGCTTTTGAGGGACAAAC
AGGTGAAGTTCGCGGGGTACATTCACCCGCATCCCTTGATCCATAAGATC
GAGCTGCGAGTACAGACCCTGGACAGGGCGCTCTCTACGCCCATGCAGGC
CCTGGAGAACGCCCTCTCCGATCTCAACCAAGAATTTACAGGGCTCAAGG
CTCGCTTCCAACAGGAAGTCCGACGGGTGCaggcggagcaggcggaTAGG
GAGTACAGATAgATGAATGAGCCCAAACGAGCTGACTCCTACCGCTTGTC
CGAGGGCGAAAAGAAGTGCGAATGGAAAGACAGCGCGAATGAAAAAATGG
CGAACTCAGGCACCCTTGTCATTAACAAGGAGGACCACACGATGGGAAAC
CTGATCCGGATGCAGCTTTTGAGGGACAAACAGGTGAAGTTCGCGGGGTA
CATTCACCCGCATCCCTTGATCCATAAGATCGAGCTGCGAGTACAGACCC
TGGACAGGGCGCTCTCTACGCCCATGCAGGCCCTGGAGAACGCCCTCTCC
GATCTCAACCAAGAATTTACAGGGCTCAAGGCTCGCTTCCAACAGGAAGT
CCGACGGGTGCaggcggagcaggcggaTAGGGAGTACAGATAgATGAATG
AGCCCAAACGAGCTGACTCCTACCGCTTGTCCGAGGGCGAAAAGAAGTGC
GAATGGAAAGACAGCGCGAATGAAAAAATGGCGAACTCAGGCACCCTTGT
CATTAACAAGGAGGACCACACGATGGGAAACCTGATCCGGATGCAGCTTT
TGAGGGACAAACAGGTGAAGTTCGCGGGGTACATTCACCCGCATCCCTTG
ATCCATAAGATCGAGCTGCGAGTACAGACCCTGGACAGGGCGCTCTCTAC
GCCCATGCAGGCCCTGGAGAACGCCCTCTCCGATCTCAACCAAGAATTTA
CAGGGCTCAAGGCTCGCTTCCAACAGGAAGTCCGACGGGTGCaggcggag
caggcggaTAGGGAGTACAGATAg back to top
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