rna9282, rna9282 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9282
Unique Name	rna9282
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1126
Alignment location	KK037252.1:279348..281647 +

Link to JBrowse

Properties


Property Name	Value
Product	esterase lipase thioesterase family protein
Orig transcript id	gnl\|cribi\|Naga_100147g12.4606.mrna
Orig protein id	gnl\|cribi\|Naga_100147g12.4606
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:279348..281647 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100147g12	gene9002	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9282	rna9282-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21425.1	cds9252	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:279348..281647+
coding sequence from alignment at KK037252.1:279348..281647+

mRNA sequence

>rna9282 ID=rna9282|Name=rna9282|organism=Nannochloropsis gaditana|type=mRNA|length=1126bp
ACTCACCATGGATGCGAGACAGAGAACTAGCCACCAGGGATAACAAGATA
GCAGTGAATCAGATAATAACTGAATGCGGCACCTCTTGCGATACGACGCA
CCAGAACATTCACACAAAAGTCACATACATCTCTTTTCATGCCCATACTG
AAGCAACTGCACAGGAAAGCAAAAAGCGTGAAGTCATGATCTCCACGTTT
TCGCTGGCCACGCTTCTCCTTCTTGGACTCTGCACCACTCAGGTCGCTGC
ACGTGGGTACATGAGGACGATGGACGCGGCGGCCTACGTTCGGGATGACT
TCAATGCCTCGGTCGCCATGCCTTTGCGAGTGAAACCTGGCCGGGTGTAT
GAATTTAGCACACCCGCAGATACCGACGATGACCATTTTGTCAATATTCA
GTGCCCGCAGCCCAAGAAAACACAAAAGAAAGGCTTTTTAACTTATCTCA
GCTACGTTAATAGCTTTCCGGACACCCCTGTCTACGTTTATCAACTCGGC
GATGACTATAACGACAATCAGGGAGCAATGTACAGCGCTCGAGATGAGCC
TGGTTACGGGTCTCTGCTTCCTCTCTTCTGCAGCAACGGTGTGCTTACCG
TTGCCTTCAACTACGAGGGTACCTAAATGGTTCTTTTCGAGAGGGGAAAG
CCCGTCATGCGCTCAATGTCCTTTCAAGCTGGCTTCAGCCTTCATGCGAA
AGACAACATCGTTGTCAAAAGACTCGCCATGGCGCATATGTATTGTGTTT
CAGGGGCGTTGTTAACGCTCTACTTTAATGTGTTCCCTGTGGGAGTTTGT
TTTCGCGTGACAGCCTTTTGTGTTGTAGGAACACCTTTCACAAGCTTATA
TTGGGATGCAAAACTTTAATTGAAGTGAGGAACGAATCAGAGGCTGGTAG
ATTGTAGTGAGAATATGGCTCAGTGAGTAGATGAAAGAAGAGGCCAAAAA
TGAAGAGCAAACCGAGAAGGCCGTGTATGCGTACAATTCTTTCACTGTCA
ATGCCCGATGTTCTACGACTGTGTTGTTGTAGTAGAGCATCTCACTTCCT
GAAACCCTCTGCGACTTAGATAAAGTCTCTGTGAATAAAACTTATGGATC
TGCGAGTCACATGGTACAAGCCACTT

protein sequence of rna9282

>rna9282-protein ID=rna9282-protein|Name=rna9282|organism=Nannochloropsis gaditana|type=polypeptide|length=402bp
MVLDTPALLGLVIYAIVISWLSWLLFRMLFPPHASPATLHVRDYGEDRRK
IPYVAPCAIPEHIVCKEKYILNSRGMLLHTCEWWPQHVGDKPRALVVQCC
GFADSNTFLPMTRSIRLAQQGFAVVGMDPEGHGRSDGLHAYVPSFAALVE
DYWQWFTRDIRSNSAYAGLPTFLLGESMGGNVVVQLLLRDGLEQTNYFQG
AIMLAPMLEVSPRMKPPKALVTFLRHLAPFLPTLPVTPTKDLLSKAFRRA
EVLAMAQKAPYGYRLKPRLGTALQLLEATELVTQRASEVQHPYLLLQGDS
DVVTCPETVKVFHAKSGSREKELKLYEGMWHSLLSGELEENIETVYRDIF
AWLDRRLSPEEDEKRPGRGQQEGNSKGILVQDGSRDGEARRRSGRRTGEA
MD

mRNA from alignment at KK037252.1:279348..281647+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9282 ID=rna9282|Name=rna9282|organism=Nannochloropsis gaditana|type=mRNA|length=2300bp|location=Sequence derived from alignment at KK037252.1:279348..281647+ (Nannochloropsis gaditana)
ACTCCCTCTTTCAGCCCCCCATCCGGACCGATTTCTTAGGCACGTAAACT
GAAATTCTCTTCTTACACATTTCTGGATAGAATTGCACCGCTGAAGGCAG
AGAAAGCGGGTGGAAAATTCCACCATGGTTCTGGACACTCCGGCACTCCT
GGGACTGGTGATCTACGCGATAGTCATCTCGTGGCTGTCTTGGTTATTGT
TTCGCatgctctttcccccccacgctTCTCCTGCCACTCTGCATGTCAGG
GACTATGGAGAGGACCGCCGCAAAATTCCTTATGTAGCACCGTGCGCGAT
ACCGGAGCACATTGTTTGTAAAGAGAAATACATCCTTAACTCCCGGGGCA
TGCTGCTGCATACGTGCGAATGGTGGCCTCAGCACGTCGGTGACAAGCCA
CGAGCCCTGGTCGTGCAGTGTTGTGGGTTTGCGGACTCTAACACCTTTCT
GCCCATGACACGGTCCATTCGCTTGGCTCAGCAGGGCTTTGCGGTGGTAG
GGATGGATCCTGAAGGACATGGGCGGAGTGACGGATTACATGCCTACGTG
CCTTCTTTTGCTGCCCTTGTGGAAGACTATTGGCAGTGGTTCACGCGAGA
CATACGATCCAACTCCGCTTACGCCGGGCTGcctactttcctcctcgggg
agTCGATGGGCGGGAACGTGGTGGtccagctcctgctccgGGACGGGTTG
GAACAGACGAATTACTTCCAAGGCGCCATAATGCTTGCGCCCATGCTGGA
GGTTTCTCCTCGCATGAAACCCCCCAAGGCTTTGGtcaccttcctccgtc
atctCGCGCCTTTCTTGCCCACACTGCCCGTGACCCCTACCAAGGACCTC
TTGAGCAAAGCGTTCCGACGTGCGGAAGTTCTGGCCATGGCACAGAAAGC
TCCCTACGGCTACAGGCTCAAGCCCAGGCTGGGGACCGCGCTCCAGGTGA
GACAAATGGAAGCTTCTAGAAGGTGGTAAAAGTCGTGCGTCGATTTTGTG
TGTCTTGGATGAGCTCCTGGCTGGCCCAGCTTGACGTATGTTGCCCTCCT
TATCCCTCCCCtaatttccttccccctgccaGCTCCTGGAGGCCACAGAG
CTTGTGACCCAACGTGCCTCCGAGGTGCAAcacccctacctcctcctcca
aggggATTCCGACGTGGTTACGTGCCCGGAGACCGTCAAGgtgagcaaga
ggaagcgctCCCTGCGTGCGGGAGACGGGCCTTGCCAGGCATGCTATGGG
TTCctgtcctttcctctctcgaTCTCTACCTTTCCCCGGACGCTACCTGC
AGGTGTTTCATGCCAAGTCTGGGAGTCGAGAGAAAGAGCTTAAATTGTAC
GAGGGTATGTGGCACTCTCTCTTAAGCGgcgagctggaggagaacaTCGA
GACGGTCTATCGGGACATTTTCGCCTGGCTGGACCGCCGCTTGTCgccag
aggaggacgaaaagcggccagggagggggcaacAGGAGGGGAATTCAAAG
GGTATACTTGTCCAGGATGGGTCAAGAGATGGTGAGGCGCGTAGGCGGAG
CGGGCGCCGGACAGGAGAAGCGATGGATTAGTAGAGCCACGGAGCACGGG
GACCGGTGAGTAAATGGATGGGTCGCGTGGAGTATATGAGTCTGTAAAAA
GCGCCAAATGAGAAGTTTTCAAGAAAGCTTATGGAAAGTGAACGGAAGCG
AATCACGTTGTGGGGGCCGAAGAAGCCCCAAGGCGCCCGCAATGATTGTA
TAGAAAGACAAGGCGCCTCCTGGCCGACCAACTACTTTGTCTCCCTGTAC
ATTAAGCTCTCCTTCGATCATTCATTCCCGCGAATAGGGCATGAAGATAT
ATTCGAATAAGATTGAGTTTCTCCTATCGCATCCTGTGGGGCATTGTCGG
ACAAAAGCATTAAGCATGGGCCTGAAGATCCAGGGTACGAAGACTTTTGG
GGAGAGGTAGATCAGGGGTAGGAAGCGCCCCGCCCCTCATACCTCAATAT
TTAGGCGGTAGGAGGCATTCACGAGATAATTTTTATGACGAGCTAGTAAT
AATCAGGCTGGCTCAAAGGGCGGGCCTGAGGAAAAATAAAGCAAAGCGGG
AAAAGATCGCAGGCAAGAAGCATGCGTCGCAAATTAATGTCCTGAAATCG
GGTGCTCAGGTCACAAATATGAAACCATTAATTTCCTGAAATCGGGTGCT
CAGGTCACAAATATGAAATCGGAACTCAATGCAAACGCACAACGATTCCA
TCGAAGCTCTACACATCCTTAATCAGCCCTCTCCATCCGCACCACCTTGC

Coding sequence (CDS) from alignment at KK037252.1:279348..281647+

>rna9282 ID=rna9282|Name=rna9282|organism=Nannochloropsis gaditana|type=CDS|length=3627bp|location=Sequence derived from alignment at KK037252.1:279348..281647+ (Nannochloropsis gaditana)
ATGGTTCTGGACACTCCGGCACTCCTGGGACTGGTGATCTACGCGATAGT
CATCTCGTGGCTGTCTTGGTTATTGTTTCGCatgctctttcccccccacg
ctTCTCCTGCCACTCTGCATGTCAGGGACTATGGAGAGGACCGCCGCAAA
ATTCCTTATGTAGCACCGTGCGCGATACCGGAGCACATTGTTTGTAAAGA
GAAATACATCCTTAACTCCCGGGGCATGCTGCTGCATACGTGCGAATGGT
GGCCTCAGCACGTCGGTGACAAGCCACGAGCCCTGGTCGTGCAGTGTTGT
GGGTTTGCGGACTCTAACACCTTTCTGCCCATGACACGGTCCATTCGCTT
GGCTCAGCAGGGCTTTGCGGTGGTAGGGATGGATCCTGAAGGACATGGGC
GGAGTGACGGATTACATGCCTACGTGCCTTCTTTTGCTGCCCTTGTGGAA
GACTATTGGCAGTGGTTCACGCGAGACATACGATCCAACTCCGCTTACGC
CGGGCTGcctactttcctcctcggggagTCGATGGGCGGGAACGTGGTGG
tccagctcctgctccgGGACGGGTTGGAACAGACGAATTACTTCCAAGGC
GCCATAATGCTTGCGCCCATGCTGGAGGTTTCTCCTCGCATGAAACCCCC
CAAGGCTTTGGtcaccttcctccgtcatctCGCGCCTTTCTTGCCCACAC
TGCCCGTGACCCCTACCAAGGACCTCTTGAGCAAAGCGTTCCGACGTGCG
GAAGTTCTGGCCATGGCACAGAAAGCTCCCTACGGCTACAGGCTCAAGCC
CAGGCTGGGGACCGCGCTCCAGCTCCTGGAGGCCACAGAGCTTGTGACCC
AACGTGCCTCCGAGGTGCAAcacccctacctcctcctccaaggggATTCC
GACGTGGTTACGTGCCCGGAGACCGTCAAGGTGTTTCATGCCAAGTCTGG
GAGTCGAGAGAAAGAGCTTAAATTGTACGAGGGTATGTGGCACTCTCTCT
TAAGCGgcgagctggaggagaacaTCGAGACGGTCTATCGGGACATTTTC
GCCTGGCTGGACCGCCGCTTGTCgccagaggaggacgaaaagcggccagg
gagggggcaacAGGAGGGGAATTCAAAGGGTATACTTGTCCAGGATGGGT
CAAGAGATGGTGAGGCGCGTAGGCGGAGCGGGCGCCGGACAGGAGAAGCG
ATGGATTAGATGGTTCTGGACACTCCGGCACTCCTGGGACTGGTGATCTA
CGCGATAGTCATCTCGTGGCTGTCTTGGTTATTGTTTCGCatgctctttc
ccccccacgctTCTCCTGCCACTCTGCATGTCAGGGACTATGGAGAGGAC
CGCCGCAAAATTCCTTATGTAGCACCGTGCGCGATACCGGAGCACATTGT
TTGTAAAGAGAAATACATCCTTAACTCCCGGGGCATGCTGCTGCATACGT
GCGAATGGTGGCCTCAGCACGTCGGTGACAAGCCACGAGCCCTGGTCGTG
CAGTGTTGTGGGTTTGCGGACTCTAACACCTTTCTGCCCATGACACGGTC
CATTCGCTTGGCTCAGCAGGGCTTTGCGGTGGTAGGGATGGATCCTGAAG
GACATGGGCGGAGTGACGGATTACATGCCTACGTGCCTTCTTTTGCTGCC
CTTGTGGAAGACTATTGGCAGTGGTTCACGCGAGACATACGATCCAACTC
CGCTTACGCCGGGCTGcctactttcctcctcggggagTCGATGGGCGGGA
ACGTGGTGGtccagctcctgctccgGGACGGGTTGGAACAGACGAATTAC
TTCCAAGGCGCCATAATGCTTGCGCCCATGCTGGAGGTTTCTCCTCGCAT
GAAACCCCCCAAGGCTTTGGtcaccttcctccgtcatctCGCGCCTTTCT
TGCCCACACTGCCCGTGACCCCTACCAAGGACCTCTTGAGCAAAGCGTTC
CGACGTGCGGAAGTTCTGGCCATGGCACAGAAAGCTCCCTACGGCTACAG
GCTCAAGCCCAGGCTGGGGACCGCGCTCCAGCTCCTGGAGGCCACAGAGC
TTGTGACCCAACGTGCCTCCGAGGTGCAAcacccctacctcctcctccaa
ggggATTCCGACGTGGTTACGTGCCCGGAGACCGTCAAGGTGTTTCATGC
CAAGTCTGGGAGTCGAGAGAAAGAGCTTAAATTGTACGAGGGTATGTGGC
ACTCTCTCTTAAGCGgcgagctggaggagaacaTCGAGACGGTCTATCGG
GACATTTTCGCCTGGCTGGACCGCCGCTTGTCgccagaggaggacgaaaa
gcggccagggagggggcaacAGGAGGGGAATTCAAAGGGTATACTTGTCC
AGGATGGGTCAAGAGATGGTGAGGCGCGTAGGCGGAGCGGGCGCCGGACA
GGAGAAGCGATGGATTAGATGGTTCTGGACACTCCGGCACTCCTGGGACT
GGTGATCTACGCGATAGTCATCTCGTGGCTGTCTTGGTTATTGTTTCGCa
tgctctttcccccccacgctTCTCCTGCCACTCTGCATGTCAGGGACTAT
GGAGAGGACCGCCGCAAAATTCCTTATGTAGCACCGTGCGCGATACCGGA
GCACATTGTTTGTAAAGAGAAATACATCCTTAACTCCCGGGGCATGCTGC
TGCATACGTGCGAATGGTGGCCTCAGCACGTCGGTGACAAGCCACGAGCC
CTGGTCGTGCAGTGTTGTGGGTTTGCGGACTCTAACACCTTTCTGCCCAT
GACACGGTCCATTCGCTTGGCTCAGCAGGGCTTTGCGGTGGTAGGGATGG
ATCCTGAAGGACATGGGCGGAGTGACGGATTACATGCCTACGTGCCTTCT
TTTGCTGCCCTTGTGGAAGACTATTGGCAGTGGTTCACGCGAGACATACG
ATCCAACTCCGCTTACGCCGGGCTGcctactttcctcctcggggagTCGA
TGGGCGGGAACGTGGTGGtccagctcctgctccgGGACGGGTTGGAACAG
ACGAATTACTTCCAAGGCGCCATAATGCTTGCGCCCATGCTGGAGGTTTC
TCCTCGCATGAAACCCCCCAAGGCTTTGGtcaccttcctccgtcatctCG
CGCCTTTCTTGCCCACACTGCCCGTGACCCCTACCAAGGACCTCTTGAGC
AAAGCGTTCCGACGTGCGGAAGTTCTGGCCATGGCACAGAAAGCTCCCTA
CGGCTACAGGCTCAAGCCCAGGCTGGGGACCGCGCTCCAGCTCCTGGAGG
CCACAGAGCTTGTGACCCAACGTGCCTCCGAGGTGCAAcacccctacctc
ctcctccaaggggATTCCGACGTGGTTACGTGCCCGGAGACCGTCAAGGT
GTTTCATGCCAAGTCTGGGAGTCGAGAGAAAGAGCTTAAATTGTACGAGG
GTATGTGGCACTCTCTCTTAAGCGgcgagctggaggagaacaTCGAGACG
GTCTATCGGGACATTTTCGCCTGGCTGGACCGCCGCTTGTCgccagagga
ggacgaaaagcggccagggagggggcaacAGGAGGGGAATTCAAAGGGTA
TACTTGTCCAGGATGGGTCAAGAGATGGTGAGGCGCGTAGGCGGAGCGGG
CGCCGGACAGGAGAAGCGATGGATTAG

Synonyms

Publications