rna9277, rna9277 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9277
Unique Name	rna9277
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	465
Alignment location	KK037252.1:269333..271930 -

Link to JBrowse

Properties


Property Name	Value
Product	fad synthetase
Orig transcript id	gnl\|cribi\|Naga_100147g8.4602.mrna
Orig protein id	gnl\|cribi\|Naga_100147g8.4602
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:269333..271930 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100147g8	gene8999	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21421.1	cds9247	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9277	rna9277-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:269333..271930-
coding sequence from alignment at KK037252.1:269333..271930-

mRNA sequence

>rna9277 ID=rna9277|Name=rna9277|organism=Nannochloropsis gaditana|type=mRNA|length=465bp
ATGAACACAGGAGGACCCGGCAGTAAGCATGCGAGGGGTCGGCTTATATC
TCTGCTGTGGGGCAGTAATGCTCATAGCTTAGACTCTAGGAGACCGTTTT
GGGCGGTTGATTCCAGTAGCATGTGTAAATTATGCAGCCTTCAAATTAAG
GAAGCTGCCGTATCCCATCAACACCTCGGATCGAACCAAGGCGCGTGCTT
CATGATGCTGACTCAGTGTGGCCTTAAATGTGGGAGTCTGCTGGAGGAAG
AGGAAGGCAAGGGGGGCGAGCTGGGAGAGGGGTGGTTCACGTCAAAACTT
GGGTGGGATGTTTCTTTGGGCACGTCGCAGTCGTTGAATAAGCAGGCGGG
GGGTTGGGTGTCTTTGATTTGCATTGACTGGGATGGGCCTTTTACTGGAA
TAAAGAAGGGATTGAAAAAGGATGCCAAAAAAGAGACGGGAAGGAGACGG
CGAGCCAGAAGTTGA

protein sequence of rna9277

>rna9277-protein ID=rna9277-protein|Name=rna9277|organism=Nannochloropsis gaditana|type=polypeptide|length=741bp
MHLPWTGVRQIFVLLHFACLWSSTWSFWAKPVLRRNLDHRAIGAAFAPCS
PLRLPFTRMQASILSTSTATPVSGALVNSTSASGQDRGAYDDALTLYKTL
RADDDSSMADKVHTALDVVEQALRLYGPSHVFASYNGGKDAVVVMHLLRA
ALARHVQAYDLDSPAPADTASSSPSSGPSTIPRPRLVYFEQPSTEFPEVK
ALVSQTTQRYDLDLRVYQDVPFAQGLKACIEGEGGAPLAFLLGTRKGDPN
CKEQETFAPSSTWMPAFMRVNPILSWTYGEIWHFLRRYNLPYCSLYDQGY
TSLGKVDDTRPNPALAKSRARDDAQEGGEGGGAGGVGGGEFYPAYMLTDW
DLERAGRVDKKKEATARAVSNKGVEGDGCRAVEEAAAAAAKAAAQGEGKT
PVMSAKASSKGWNKASGGQSKEAAEGGGSRESVKTAGLVIIGDEILKGKT
SDTNSLYAARRLREKGVAVQRIVVLSDNHADIEQEVRRQASLFDVVITSG
GVGPTHDDLTIKAVAAALGQGVQENEEMIQRLQDAYGVASRDDLSEGQRK
MALLPEQARLRVPPPPPSPTPAPTPPSAFTTEAATVAATTATAAAVVAVA
SKTKVWPILMCGNVYVLPGVPSFFEAKMDTIVDHFLNHFPIYTRKIVLGL
DEVEIVEALNQAVAHFEPEGCVFGSYPFYGETRPRVVITLESGCEKTVEA
ATAFLIESIPKEAVLQVGKDDDLRGGEGQVLDGEIQGRHPL

mRNA from alignment at KK037252.1:269333..271930-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9277 ID=rna9277|Name=rna9277|organism=Nannochloropsis gaditana|type=mRNA|length=2598bp|location=Sequence derived from alignment at KK037252.1:269333..271930- (Nannochloropsis gaditana)
TCGGACGCGGCTTTTCGCTCACTTGACCATTTTTACGGCTCATCTGATTC
TTGGCAGCCGTATTTAACTTGCCTGCCTTTGGCACGTACATCTCTTGGGT
CAAGGTCTGCGCATTTTTATTCCGTGGTGGTTGGATACTAAAGCACTGCA
GACACGAGCCCTAGAGTACAACACGAACGAGCGCTTCTGAGGACCCGACT
GGTGCCCACAAAACAAGAAAACGCGGTGGATCGATGCATCTGCCTTGGAC
TGGAGTACGGCAGATATTTGTGCTGCTTCATTTTGCGTGTCTGTGGAGTA
GCACCTGGTCTTTTTGGGCGAAACCCGTGCTACGACGAAATCTCGACCAT
CGGGCCATAGGAGCTGCTTTTGCTCCTTGCTCTCCGCTTCGACTGCCTTT
TACTCGTATGCAAGCATCAATTTTGTCTACGTCTACTGCCACGCCTGTGT
CTGGCGCCCTCGTAAACTCCACGTCTGCGTCCGGGCAAGACCGCGGCGCC
TACGACGACGCCCTCACGTTGTACAAGACTTTGCGTGCCGATGACGATTC
CTCCATGGCCGACAAGGTGCACACGGCACTCGACGTGGTGGAGCAGGCGC
TACGATTGTATGGCCCATCGCATGTCTTTGCCTCGTACAACGGGGGAAAG
GACGCAGTGGTAGTAATGCACCTCCTCCGCGCGGCCCTCGCCCGCCATGT
CCAAGCCTACGACCTCGACAGCCCCGCCCCTGCAGACACCGCCTCCTCCT
CACCGTCCTCGGGCCCCAGCACTATCCCTCGCCCTCGACTGGTCTATTTC
GAGCAACCGTCCACTGAGTTTCCGGAGGTGAAAGCCCTGGTTTCCCAAAC
TACTCAACGGTACGACCTTGATTTGCGCGTGTACCAGGACGTGCCTTTTG
CTCAAGGGCTCAAGGCCTGCATCGAGGGCGAAGGCGGCGCGCCTCTGGCT
TTTCTATTGGGTACCCGGAAAGGCGACCCGAACTGCAAGGAGCAAGAAAC
CTTCGCGCCAAGCAGCACCTGGATGCCGGCCTTCATGCGCGTCAACCCGA
TCCTGTCCTGGACCTATGGGGAGATATGGCATTTTTTACGCCGCTACAAT
CTGCCCTACTGCTCCCTGTACGACCAAGGGTACACGTCGCTGGGGAAGGT
CGATGACACAAGGCCTAATCCGGCCTTAGCCAAGTCGCGGGCCCGGGACG
ACGCGCAGGAGGGAGGGGAAGGGGGAGGCGCGGGTGGGGTGGGCGGAGGG
GAGTTCTACCCGGCCTACATGCTGACGGATTGGGATCTGGAGAGGGCAGG
CAGGGTGGACAAGAAGAAAGAGGCGACAGCACGAGCCGTGTCCAATAAGG
GGGTGGAAGGCGATGGGTGTAGAGCGGTGGAGGAGGCGGCGGCTGCAGCA
GCAAAAGCGGCCGCGCAGGGGGAAGGGAAGACGCCAGTCATGTCCGCAAA
GGCGTCAAGTAAAGGGTGGAACAAAGCCAGCGGTGGCCAGAGCAAAGAGG
CGGCCGAGGGCGGTGGGTCGAGGGAGAGCGTGAAGACGGCGGGGCTGGTC
ATTATCGGCGACGAGATCCTGAAGGGGAAGACATCGGACACGAACTCGCT
CTATGCGGCGAGGAGATTGCGGGAGAAAGGTGTGGCAGTGCAGCGAATCG
TGGTCCTTTCTGATAACCACGCAGACATCGAGCAGGAAGTTCGACGACAA
GCCTCCTTGTTTGATGTGGTCATCACGAGTGGGGGAGTGGGCCCTACCCA
TGACGACCTAACTATTAAGGCCGTGGCGGCGGCTTTGGGGCAAGGCGTGC
AAGAAAATGAAGAAATGATCCAGCGCCTGCAAGACGCCTATGGGGTAGCC
TCCAGGGATGATCTAAGCGAAGGACAACGAAAAATGGCCCTCCTTCCTGA
GCAAGCCCGCCTACGCGTCCCTCCCCCACCGCCCTCCCCGACCCCTGCAC
CCACTCCCCCCTCCGCGTTCACCACAGAGGCTGCAACCGTGGCAGCAACC
ACAGCCACGGCAGCAGCTGTGGTTGCGGTCGCTTCCAAAACCAAAGTGTG
GCCCATTTTGATGTGCGGAAACGTCTACGTTCTTCCAGGAGTACCGTCCT
TTTTCGAAGCCAAAATGGACACCATCGTCGACCACTTCTTGAACCACTTC
CCCATTTACACCCGGAAAATTGTCCTGGGATTGGACGAAGTGGAAATCGT
TGAGGCGTTGAACCAAGCGGTGGCTCATTTCGAGCCAGAAGGTTGCGTGT
TTGGGAGCTATCCATTCTATGGGGAGACCCGCCCGCGGGTAGTTATCACA
TTAGAAAGCGGGTGCGAGAAGACGGTGGAGGCGGCCACAGCGTTTCTGAT
CGAAAGCATACCTAAAGAGGCGGTTTTACAGGTGGGCAAGGATGACGATT
TGAGAGGCGGAGAGGGGCAGGTCCTCGATGGAGAGATACAAGGAAGGCAC
CCATTGTAAAGGAGTCAGATGGCAGAGGATATGGTAAATCTCAGCTAAAT
TTAAGGGGAGGGAAGAGATAGCTCTCAGAGCCGAGCCGTGGGAGAGAGCG
CAATGTCTTCTCTCCAAAAATAAGTAGTCCGCCTGTTAGGGTTACAGG

Coding sequence (CDS) from alignment at KK037252.1:269333..271930-

>rna9277 ID=rna9277|Name=rna9277|organism=Nannochloropsis gaditana|type=CDS|length=2226bp|location=Sequence derived from alignment at KK037252.1:269333..271930- (Nannochloropsis gaditana)
ATGCATCTGCCTTGGACTGGAGTACGGCAGATATTTGTGCTGCTTCATTT
TGCGTGTCTGTGGAGTAGCACCTGGTCTTTTTGGGCGAAACCCGTGCTAC
GACGAAATCTCGACCATCGGGCCATAGGAGCTGCTTTTGCTCCTTGCTCT
CCGCTTCGACTGCCTTTTACTCGTATGCAAGCATCAATTTTGTCTACGTC
TACTGCCACGCCTGTGTCTGGCGCCCTCGTAAACTCCACGTCTGCGTCCG
GGCAAGACCGCGGCGCCTACGACGACGCCCTCACGTTGTACAAGACTTTG
CGTGCCGATGACGATTCCTCCATGGCCGACAAGGTGCACACGGCACTCGA
CGTGGTGGAGCAGGCGCTACGATTGTATGGCCCATCGCATGTCTTTGCCT
CGTACAACGGGGGAAAGGACGCAGTGGTAGTAATGCACCTCCTCCGCGCG
GCCCTCGCCCGCCATGTCCAAGCCTACGACCTCGACAGCCCCGCCCCTGC
AGACACCGCCTCCTCCTCACCGTCCTCGGGCCCCAGCACTATCCCTCGCC
CTCGACTGGTCTATTTCGAGCAACCGTCCACTGAGTTTCCGGAGGTGAAA
GCCCTGGTTTCCCAAACTACTCAACGGTACGACCTTGATTTGCGCGTGTA
CCAGGACGTGCCTTTTGCTCAAGGGCTCAAGGCCTGCATCGAGGGCGAAG
GCGGCGCGCCTCTGGCTTTTCTATTGGGTACCCGGAAAGGCGACCCGAAC
TGCAAGGAGCAAGAAACCTTCGCGCCAAGCAGCACCTGGATGCCGGCCTT
CATGCGCGTCAACCCGATCCTGTCCTGGACCTATGGGGAGATATGGCATT
TTTTACGCCGCTACAATCTGCCCTACTGCTCCCTGTACGACCAAGGGTAC
ACGTCGCTGGGGAAGGTCGATGACACAAGGCCTAATCCGGCCTTAGCCAA
GTCGCGGGCCCGGGACGACGCGCAGGAGGGAGGGGAAGGGGGAGGCGCGG
GTGGGGTGGGCGGAGGGGAGTTCTACCCGGCCTACATGCTGACGGATTGG
GATCTGGAGAGGGCAGGCAGGGTGGACAAGAAGAAAGAGGCGACAGCACG
AGCCGTGTCCAATAAGGGGGTGGAAGGCGATGGGTGTAGAGCGGTGGAGG
AGGCGGCGGCTGCAGCAGCAAAAGCGGCCGCGCAGGGGGAAGGGAAGACG
CCAGTCATGTCCGCAAAGGCGTCAAGTAAAGGGTGGAACAAAGCCAGCGG
TGGCCAGAGCAAAGAGGCGGCCGAGGGCGGTGGGTCGAGGGAGAGCGTGA
AGACGGCGGGGCTGGTCATTATCGGCGACGAGATCCTGAAGGGGAAGACA
TCGGACACGAACTCGCTCTATGCGGCGAGGAGATTGCGGGAGAAAGGTGT
GGCAGTGCAGCGAATCGTGGTCCTTTCTGATAACCACGCAGACATCGAGC
AGGAAGTTCGACGACAAGCCTCCTTGTTTGATGTGGTCATCACGAGTGGG
GGAGTGGGCCCTACCCATGACGACCTAACTATTAAGGCCGTGGCGGCGGC
TTTGGGGCAAGGCGTGCAAGAAAATGAAGAAATGATCCAGCGCCTGCAAG
ACGCCTATGGGGTAGCCTCCAGGGATGATCTAAGCGAAGGACAACGAAAA
ATGGCCCTCCTTCCTGAGCAAGCCCGCCTACGCGTCCCTCCCCCACCGCC
CTCCCCGACCCCTGCACCCACTCCCCCCTCCGCGTTCACCACAGAGGCTG
CAACCGTGGCAGCAACCACAGCCACGGCAGCAGCTGTGGTTGCGGTCGCT
TCCAAAACCAAAGTGTGGCCCATTTTGATGTGCGGAAACGTCTACGTTCT
TCCAGGAGTACCGTCCTTTTTCGAAGCCAAAATGGACACCATCGTCGACC
ACTTCTTGAACCACTTCCCCATTTACACCCGGAAAATTGTCCTGGGATTG
GACGAAGTGGAAATCGTTGAGGCGTTGAACCAAGCGGTGGCTCATTTCGA
GCCAGAAGGTTGCGTGTTTGGGAGCTATCCATTCTATGGGGAGACCCGCC
CGCGGGTAGTTATCACATTAGAAAGCGGGTGCGAGAAGACGGTGGAGGCG
GCCACAGCGTTTCTGATCGAAAGCATACCTAAAGAGGCGGTTTTACAGGT
GGGCAAGGATGACGATTTGAGAGGCGGAGAGGGGCAGGTCCTCGATGGAG
AGATACAAGGAAGGCACCCATTGTAA

Synonyms

Publications