rna9276, rna9276 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9276
Unique Name	rna9276
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4169
Alignment location	KK037252.1:268571..269249 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100147g7.4611.mrna
Orig protein id	gnl\|cribi\|Naga_100147g7.4611
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:268571..269249 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100147g7	gene8998	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9276	rna9276-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21430.1	cds9246	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:268571..269249+
coding sequence from alignment at KK037252.1:268571..269249+

mRNA sequence

>rna9276 ID=rna9276|Name=rna9276|organism=Nannochloropsis gaditana|type=mRNA|length=4169bp
AAATAGGTGTAAAGGACAAGAAGCAGCAGAACAGGGCAAGAACCTTGAAG
TTAAAATCAGTAAGGAGCAGCGTACGCATCGAGGGATCGAGAAAGGGTAC
CAGATGCCGATGGTCTCGCGGTGTTGAAGCGCGATACGGCATTCCAGTGT
AGGAAAGCGGCCAAGATAACGCTGACAGCGGTACAGGAGCTGCACCTCGC
AGTAAAACCAGAATTCCCGTCCAGAAAGAAATCGCTGTGGAAGTAGCAAA
CAGTTTCGGGCCCTTTATCCCTTCTACCTACGGCGCAGCACCTGCTCACT
TCCTAATCGCGACCCGAAACGTCTCCAGTGCCATGCCCAGAGCACGGCAA
TTCTCCCGCGTTCAGTTCCATGTAGAAGCCCCCCTCGGGCACGGGCAAGC
CATCTTCGTGACCGGAAGCGGGCCTGCCCTGGGCGACAATGATGCGCTGA
GCGGCGTGGCGCTGTATACCACCCCTGCGGAGTACCCGCGGTGGAGCTCG
GACTGGGTGTCGGTGCCCAACGACACGGACTTGACCTACAAGTACGCCAT
CTTCGAAGGGGAGGTATTCTCCCACTGGGAGCCTGCCGGCACTGGCAAAG
ACGGCACGCGCACCATGCCCATCACCAAGGACCAGGTCATTACCGATGTG
CTCGGGGTGCTCCCCTCCCCCCGCGCCTCTCCACCCCTCCCTCCTGTACC
CCTGCCCCGGAGCGCCGCTGCCTTAGCCGCCGCCGCCGCCACGGTAGAGA
GAAAAGAGAAAGGGGTGCAATGGGAAGAAGGGACGGCGAAACAGGTGGAG
GAAGACCTGCGTCGGTTTGATTTCGCGGAGGAAACGCTGGAGGGGGAGGT
TGGGGGGGAAGGGGGTGAGCCGCCATCGAAGGTTGTGATCAACCGGGAGG
ACGCCGAGGCGACGGCCTCTTCTTTGGGAGATGCGCCCATCGACGTGAAG
AGCTTCACGCCGCACACGTCCATGAAGAGCGTGTCGCTGCGCTTGGGGAG
GGAGGATTCGTTGAAAGGAGGGGGAAGGAAAGGGTCGAGGGACGGTACGG
CGTCGCAGGCGGGAGGTGGGGGCGGCGGCGCGGCCGTCGCTTACAAGAGA
GGAAGGGGAGGGAGTGCGAGTGCGGCGCAGGCCTTCTTGGACCCCGACGA
GGTGTCTATCTCTCCCTCGGACGGGGTGGTGGTGGTGAGCTACTTCCTTC
CGCTGATTGTGTCGCGGGCGCCGTCCTTGCCCGAGGGGGAAACGGAAACA
GCGTCGAGAATAAAGAAGCGGTCCGGAGACGCCGGGTTGCCCGGTGTTCG
GGTGGACGAGGGCGGGGAGGAGGAAGAGGAGGAGGGGGCCAGGGACTGGA
TCATCGCGTGGGACACCGAAAACTTGCTCTCGCTGCGAACCAGGCTCCGG
GTCACGTGGGTGGGGACTGTCCGTCTGCCCGCCGAGATCGGGGGGAAACT
GAACCGTGAGGAACAAGAAAGCTTGGCCCGTGCCCTCCGCAAGTTCGACT
GCGTCCCCGTCTTTATCGACCCGGAGATCCACGACAAGTTCTACAACACC
TTCTGCAAGGGTACGCTTTGGCCGGTCTTCCACCACATTTTGGACGTGTA
CGGCTCGCGCCCCACGCGTTTCTGGGACCAGAAAACCCAGGACTCGGTGT
GGCACTCCTACTCCCACGTGAACATGCGGTTCCGGGACAAGGTGGTGGAG
GTTTACAACGAGGGAGACCTGATCTGGATCCATGGATTCCACCTGCTGGT
CCTCCCCTCCTTCATTACCAAGTCCCTGCCCACCGCCAAGACGGGCCTCT
TCTTGCACACGCCTTTTCCCTCCTCCGAGATCTTCCGGACGCTCTCTGTC
CGCGAAGACTTGTTGCGCGGGATGTTGAACGCCGATCACATCGGGTTCCA
CCTGTACGAGTACGCCCGGCATTTCGTCACCTGCGTCCGGCGCATATTGG
GTGTGACGTACGATATGGAAGGGGGGCAAATGGCTGTGCATTACAACGGG
CGGACCGTGGCGATCTCCTCCATCCACGTGGGGGTGGACAGCGCGGCCAT
CCGGCACTTGATGCTCGCAGAACCAGAGATGCAGCTGGAGGTGGACAAGC
TTAGACAGCAGTTCGCTGGAAGGAAGGTGATTTTGGGCATCGACCGGCTG
GAGCGGATTCGTGGCATTCCCCTAAAGCTCCTGGCTTTTGAGAGGTTTCT
GGCTGCGCACCCAGAGTGGAAGGGCAAGGTGGTGCTCTTCCAAGTGGGAA
TAACGGCCAGCGAACGTGGAGAGGACTACCCCCGGACCAAGCGGGAGGTG
AGGCAAATGGTGACGTCCATCAATGCGGCCCATGCCGACCTGCCCGCCCC
GCCCGTGGTCTTCATCGAGCGGAACGAGCGGCAGATGCGGCTTCAGGACC
GGATGCCTCTCTTGGCCATGGCGGACGTATTCATCGTCACGAGCCCCCGG
GACGGATTGAACCGAATGCCCCTCGAGTTTGTGGCGGCGCAGGCGGTAGT
GGTGGGAGGGAAGGAGGGGGGTTCTGCGAGCAGCAGTCGCCGCTCGAGCC
AAGTGGACTTGACCGCAGAGGGGGCGGCCAAAGGGACAGTAGAATGCCCG
CCGCCAACAGAGGAGGATACACCCCTCCCGGGGGTCTTGATCCTGAGCGA
GTTCGTGTCGTGCACGCGCGTCCTGCTGGGGGCCATGTTCGTGAACCCGT
GGCAGATCGAGGGGACCGGCGAGCTGATGGCGCGGGCCTTGGGCATGTCG
GCGGAGGAGCGACTGGCCCGGCACGCCCGGGACTGGCGCTTTGTCAACTC
TCAAACCGTCTTGCAGTGGGCGTACCAGATCCTGATGGACGTGAAACGCG
TGAAAAAGGACGTGGACCGGTCTTTTTACTCGGGCGTGGGCCTCGGCTTG
CACTACCGGGTATTGGGGATGGACAAGGGCTTTCACCCCCTCCGCGTTGA
GGACGTGGCACGCGCGTACCGGCAGAGCACGCACCGTGTCATCATGCTAG
ACTATGGGGGCACGCTCGTGAGTGGGAGCGAGAAGAAGGAGAACGTTCAG
TACTACGCGGTCAGCAACAAGCTGGCCCATCGTAAGGGTCCAAGCAAGCA
CCTTCTTTCCATCTTGCGCGATCTCTGCAACGATTTCAAGAACGCCTGCT
TTGTGGTCACGGGCATGGAGCGACAAGCTTTGGAGCAAGGCTTCGGAGAG
GTGGAGAATCTAGGTCTGGGCGCGGAACACGGTTTCTTCTACAAGATGCC
CCACGCCCACCACCCCCCCAACCACTCCCCCACCGTGGGAGGGGGTTGGG
AAATGATGCTGCCCTCCTTTGACTCCTCTTGGATGGAGCTGACCCAAGCT
ATCATGGACGTGTACGTGAAGAGGACCCACGGCACCTACATCGAACAGAA
AGGGAGCGCTCTGCTCTGGCAGTACAGGGACGCGGATCCCGAGTTCGGGC
ACATGCAGAGCAAGGAGTTGGAGGATCACTTGAGCGGCGTCTTGCGGGGG
GCGGGCGTGGAAATCTTGCGCGGGGAAAACAAGGCTTTGCAAGGAGGGTA
CCTGGAAGTGCGGCCGGAGGGGGTGCACAAGGGCAGTTTCTTGGAAAAAG
TCCTGGGGGAGATGGCTGAGCACGGCAAAGTGGTGGATTTCCTTTTGGTG
GTGGGAGACGATGCGAGCGATGAGAGTATGTTCACCGCCGCCGCAGACTA
CGCCGCCAATTTCCCCCCTAACGCGGTCGCGGCCTTCAGCTGTACCGTCG
GGAAGAAACCTAGCCAGGCCCGTTCCTTTTTGAATGACGTGGACGAAGTG
CACGATCTGCTAGGCTCGATCGCCCGGTGCTCGCGGATCACACGGCCCAC
CAGCCGGGGCTTCATGTCTAGCGTCGACCTACGGCAGCTTGTGAGCGGTT
GTGAGTCGAGCGCGGACGCAGAAGAGGAGCCAGGGCGGCCTGTGTTGACC
AAGAGTTTGACGACCAGCTCCGTGGGTGTGGCGAGCATGAAGAAGAATTT
CTCGCTCGGGGACCTGGCTGGCGGCCGCCGGGCGCGAGAAGGGAGGGACC
TTACAGGGGAGCAGCCTGTGCCGGAGTTGCTGCAGAGCCCGTCGGCGTCG
GCGATGACGTGGGCCACCTACATAGAGACGATCAAGGAGGGCAATGAGGA
TGACGGTGTCTTCTTCTGA

protein sequence of rna9276

>rna9276-protein ID=rna9276-protein|Name=rna9276|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MNTGGPGSKHARGRLISLLWGSNAHSLDSRRPFWAVDSSSMCKLCSLQIK
EAAVSHQHLGSNQGACFMMLTQCGLKCGSLLEEEEGKGGELGEGWFTSKL
GWDVSLGTSQSLNKQAGGWVSLICIDWDGPFTGIKKGLKKDAKKETGRRR
RARS

mRNA from alignment at KK037252.1:268571..269249+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9276 ID=rna9276|Name=rna9276|organism=Nannochloropsis gaditana|type=mRNA|length=679bp|location=Sequence derived from alignment at KK037252.1:268571..269249+ (Nannochloropsis gaditana)
ATGAACACAGGAGGACCCGGCAGTAAGCATGCGAGGGGGTATCTACGGGA
TAAAGGGGAGGTGTGGAGGGCGCGAAATGCGCGACAGAGGGGGTGACCGT
CCTTCTGAAGTCGGCTTATATCTCTGCTGTGGGGCAGTAATGCTCATAGC
TTAGACTCTAGGAGACCGTTTTGGGCGGTTGATTCCAGTAGCATGTGGTG
AGATTGcgccgacaaggagggaaagagcggcGTAGGAGGCACAATCGGAA
AGAttgtggagaggaggaaagtaaaTTATGCAGCCTTCAAATTAAGGAAG
CTGCCGTATCCCATCAACACCTCGGATCGAACCAAGGCGCGTGCTTCATG
ATGCTGACTCAGTGTGGCCTTAAATGTGGGAGtctgctggaggaagagga
aggcaaggggggcgagctgggagaggggtggTTCACGTCAAAACTTGGGT
GGGATGTTTCTTTGGGCACGTCGCAGTCGTTGGTGAGACAAATGCGATAG
CTTGTGGTGAGACAAATGCGATAGCTTGTCATGTATATTCGCTGCTTTAG
AATAAGCAGGCGGGGGGTTGGGTGTCTTTGATTTGCATTGACTGGGATGG
GCCTTTTACTGGAATAAAGAAGGGATTGAAAAAGGATGCCAAAAaagaga
cgggaaggagacggcgagCCAGAAGTTGA

Coding sequence (CDS) from alignment at KK037252.1:268571..269249+

>rna9276 ID=rna9276|Name=rna9276|organism=Nannochloropsis gaditana|type=CDS|length=1860bp|location=Sequence derived from alignment at KK037252.1:268571..269249+ (Nannochloropsis gaditana)
ATGAACACAGGAGGACCCGGCAGTAAGCATGCGAGGGGTCGGCTTATATC
TCTGCTGTGGGGCAGTAATGCTCATAGCTTAGACTCTAGGAGACCGTTTT
GGGCGGTTGATTCCAGTAGCATGTGtaaaTTATGCAGCCTTCAAATTAAG
GAAGCTGCCGTATCCCATCAACACCTCGGATCGAACCAAGGCGCGTGCTT
CATGATGCTGACTCAGTGTGGCCTTAAATGTGGGAGtctgctggaggaag
aggaaggcaaggggggcgagctgggagaggggtggTTCACGTCAAAACTT
GGGTGGGATGTTTCTTTGGGCACGTCGCAGTCGTTGAATAAGCAGGCGGG
GGGTTGGGTGTCTTTGATTTGCATTGACTGGGATGGGCCTTTTACTGGAA
TAAAGAAGGGATTGAAAAAGGATGCCAAAAaagagacgggaaggagacgg
cgagCCAGAAGTTGAATGAACACAGGAGGACCCGGCAGTAAGCATGCGAG
GGGTCGGCTTATATCTCTGCTGTGGGGCAGTAATGCTCATAGCTTAGACT
CTAGGAGACCGTTTTGGGCGGTTGATTCCAGTAGCATGTGtaaaTTATGC
AGCCTTCAAATTAAGGAAGCTGCCGTATCCCATCAACACCTCGGATCGAA
CCAAGGCGCGTGCTTCATGATGCTGACTCAGTGTGGCCTTAAATGTGGGA
Gtctgctggaggaagaggaaggcaaggggggcgagctgggagaggggtgg
TTCACGTCAAAACTTGGGTGGGATGTTTCTTTGGGCACGTCGCAGTCGTT
GAATAAGCAGGCGGGGGGTTGGGTGTCTTTGATTTGCATTGACTGGGATG
GGCCTTTTACTGGAATAAAGAAGGGATTGAAAAAGGATGCCAAAAaagag
acgggaaggagacggcgagCCAGAAGTTGAATGAACACAGGAGGACCCGG
CAGTAAGCATGCGAGGGGTCGGCTTATATCTCTGCTGTGGGGCAGTAATG
CTCATAGCTTAGACTCTAGGAGACCGTTTTGGGCGGTTGATTCCAGTAGC
ATGTGtaaaTTATGCAGCCTTCAAATTAAGGAAGCTGCCGTATCCCATCA
ACACCTCGGATCGAACCAAGGCGCGTGCTTCATGATGCTGACTCAGTGTG
GCCTTAAATGTGGGAGtctgctggaggaagaggaaggcaaggggggcgag
ctgggagaggggtggTTCACGTCAAAACTTGGGTGGGATGTTTCTTTGGG
CACGTCGCAGTCGTTGAATAAGCAGGCGGGGGGTTGGGTGTCTTTGATTT
GCATTGACTGGGATGGGCCTTTTACTGGAATAAAGAAGGGATTGAAAAAG
GATGCCAAAAaagagacgggaaggagacggcgagCCAGAAGTTGAATGAA
CACAGGAGGACCCGGCAGTAAGCATGCGAGGGGTCGGCTTATATCTCTGC
TGTGGGGCAGTAATGCTCATAGCTTAGACTCTAGGAGACCGTTTTGGGCG
GTTGATTCCAGTAGCATGTGtaaaTTATGCAGCCTTCAAATTAAGGAAGC
TGCCGTATCCCATCAACACCTCGGATCGAACCAAGGCGCGTGCTTCATGA
TGCTGACTCAGTGTGGCCTTAAATGTGGGAGtctgctggaggaagaggaa
ggcaaggggggcgagctgggagaggggtggTTCACGTCAAAACTTGGGTG
GGATGTTTCTTTGGGCACGTCGCAGTCGTTGAATAAGCAGGCGGGGGGTT
GGGTGTCTTTGATTTGCATTGACTGGGATGGGCCTTTTACTGGAATAAAG
AAGGGATTGAAAAAGGATGCCAAAAaagagacgggaaggagacggcgagC
CAGAAGTTGA

Synonyms

Publications