rna9268, rna9268 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9268
Unique Name	rna9268
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4575
Alignment location	KK037252.1:248143..250419 +

Link to JBrowse

Properties


Property Name	Value
Product	Mitochondrial inner membrane protein Mitofilin
Orig transcript id	gnl\|cribi\|Naga_100307g4.2281.mrna
Orig protein id	gnl\|cribi\|Naga_100307g4.2281
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:248143..250419 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100307g4	gene8990	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9268	rna9268-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21436.1	cds9238	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:248143..250419+
coding sequence from alignment at KK037252.1:248143..250419+

mRNA sequence

>rna9268 ID=rna9268|Name=rna9268|organism=Nannochloropsis gaditana|type=mRNA|length=4575bp
GAATGGAAGAGGAGGACGAAACGGAAAATGTTGTCCGCCAGGTACTAGAA
GGAATTTTACAAGAGGGGCTACGTCGAGCTAACGCTACTAATATGAAGGC
GGCGCAGTGTCTTCGGAGCCTCAATAGTGACCAGAGGGCAAAGGACCAGC
TCCTAGCGCCTCTCACCGCGACTTTGTGCGATGTTCGCACGAAAGATGAC
CTGGAAGACAACCGAAAATGCATCAAAGATTTCATGGAGCAGTATGTAGA
TAGAAGTTTTCCAAGCATCAGTGGTATGCTAGGAGAGAACGATCAAGTAG
TAGAAATGGTTGAGGAAGCGGAGGAGGAGCAAGACAAATGGGGAGACGAG
GTGGGGGCAACTGAGAATTCTTACTCGATTTTCACCGGCAAGGACGAAAA
TCGAAATCAAGGCTCGTTCTCTTTGCTTTCCATGTTGGATTTGCCGGAAG
TGAGGATGATTGATCTTGGGGCGGTGGCCGCTCAGCTGCAGGGAAGTATG
AAGGAGAAGCAGATCGCGGGGTTGAAGGCGCTGGAAACTTCTATGTGGAG
TGAGTTGACGTACAGTGAGCATTGGTCAGGCGTATGCGAGGGGTTGGCGC
GTCTCGTGGCCGCTTCCACGGAAGCCGTCCTTGAAAGCATCGGAGACAAG
GCGAGTGAGGGGCGGGTGCCAAGACGTGGCGTGCGGGCAAGCGAGCAGGA
ACAGGAGGGGCAGGGCAAGGACGATTCGGACGTGTGCATGCGTGTGATTA
AGATGTATTGGGAGCTCTTCACCTGTCTTTCCCCGGGGCAGCGCGCGGAC
ATCTATCTGGCCGTGGCCGCCGACCTGGTCAACACCTTTCGATCCCGCCT
CTGGGTCCTCCCAAACGCGGGATCTCCCTCCCTCCCAGCCGAGGAGGACG
TCTCCTCCCCGCCCGGACCCTCCCCGCCCTGTGCAGCCGCGTTGAGTATC
GAAGGAACTCCACATGGCCGCCTCCTCTGCGCCAAGGTCGGGCTGCTCCA
CCGCATGCAGCAGGACCTGCCCTCCCTCTTCCCCCACCTCCCCGACCTCG
CCCTCCATCAAGTCCTCGCCTGGACATGCCTCCTTCTCCGGACACTCCAT
TCCCCTTCCTCTCCCTCCCAACACCCTCACCTTCTCCTTTCGCCCATCCA
TCTCTTCGCCGCCCTGGACGCGTCGGCCCACTGGTTCAAGTCCTGGTGCC
TCCGCCTCCCCCCTCCCAAGCTCTCCTACTTCCTCCAACGGACAGGGCTG
CTGGGCGACATTCTTCACGTCTGTCGACCGCTCAAAGAGCAGCCTGGCCA
TGGAATAGGCCTGGATGATAGTAGCCGCTGGGAGGACAAGGGTGATGACG
CCGTTGCCGCCTCCCCGGCTCTTGCCAGCAGGGAGGAGGAAGCCGCAGTG
GTGCGCCTCCATCCCCTACCACGGGTTCCGGACGAGCCAGATATCTCCTC
CTTGCCCCCCTTCCTGTGCTCCTTCCCCCCCCTTGACCCTCGGGGACTCA
CTGCTCTCAAACAGTCCTTCTCCCTGAGCCTTCTCTCTCATCTAGGCGCA
ACCGCCTCCCTGACCTTTCACGCAGGTTCTGAGTCAGGAAAGGCACGAGA
AGGCTGTGTCGGCGCCGTTTCTGCCCTATGGGGGGGGGCGGTAGCTCTCC
GTGCCCATGAACTTCCCTCGAGACTCTCCGACGTGTGCTTGGCCCCCCCC
CCCGCCGCCCCGGCCTGTTCCCCCCACCTCCGCATTGCCACGTCTACGGC
CTCTGCCCCTCCCTCGTCTCCTTCCTCTGGCTCATACCTCATTTCCTGCG
CCGAACTCTTCCTCCACACGCTTCTCGTAGAAGACACTCCCGGAGAGCAC
CCGCCAATGCAGGTTTCACTGCCACGGATCCCTTGCATCGCAGCAACGAC
CCATCCATCTGCAGCAGCCGATTGTCCTGAGCCGCGCGTGTCGACCAGCC
ATCCCGACAAGACGAAAGACATCGCCTTCGCGCATTTCTCAACCCCTGCT
CACATAAACGTCACTTCGGGGCCCTTTTACCTGTGCCAATCGGCCGCGGC
CGCTCTGCTCGAACTTCCTCTGCCGGCTTCCTACCGCATGCACGCTCTGG
GCCGCCTGATCGCCAGGCTGCGGGGACCCTGTCCACCCGAAGCCCAAGCT
CGGCGTCTGGTGCTCACCGTCCTGGCCCTTCGTCTCTCCACACGGTGTGG
TGCCAGAGCGGGCCCGGGGGGGGGCGACGCAGACGGGGTCGGCACGGGAC
TGGAAGACCTTCGTTTCCTCCACCAGCACGCCGTCCGCCTTTGCTGCACC
CGAAGCCTCGCTACCTCCCCGCCCCTGTCGCCTGCGTCGATCAATCTCTT
GCAGCGTGTTTATTGTGAGTCTCTCTTCTCCGTATACCGCACCCAGCCGT
GCCTGTTCGACGATCTCCCTCGATGGCCTCTGCACGTCTTCCTCCCGCTT
TTGGTGACTCCCCCCACAGCAGCGACGGAAATCATGAGAGAGGATGACGC
AGGGGGGCACACCGGTGGGGCTGGTCTGCCAAATACGACAAAGGACGGCA
GACGCTCGCAGGAGTTCGCCTACGCCTGTCTAGGGTTGCTCTGCTGGGAC
TACCGAGGCATGCGGTACCTGTCGCGGCTTGGAGGGTCGTTGTTTTATGG
GCTGACAGGAGCCCTCTGCACGCGTGTCCTGGACGTGCTGGAGCGGGAAG
AGGACGGAGGGGAGGACGACGGCGACGAAAGACGGGGAGACGAGCAGAGC
GTCTGCCCCTTCCTCACGCCCTCGCTCCCTTTCCTGCCTATCCTTCTCCA
GAACATCGCCAGCGTCGGCCCACAGGCCCCGTTGGCAGGGCTACTGAGTA
CGCTCTTGGCGTGTCTCTTCCAGGATTTTCCTCGGCGGCACGGACTTCGG
TACGCGGAGGATCTGTCCTCCCCCTTGCCCCTCCTGCAGCCCCCCCGCCT
CCGCCACACCCTCTGCCTGGCTCTTGTACTCGCGCGCGAATTGGCGAGCA
GACCCTTCGAAGCGCTTGAGGACATTGCCGCGCCGCATGTAGCCGTCCTT
CTGGAGTGGGAGAAACCGCCGCTCATGCCTGAGCTAGGGGGGGACAAGGC
AAAGAGGGCCCTCCCGCGAGAGCCCCGGGGGCGGAGGGAGGGCGTGAGGC
CAGCGGTCTGGAAGGACTCCGAGGCCGGGCAGCTTCTCTCCCTCCGCCTT
TTGATAAGCATGGCGAGTACTCTGAATGGCGCGGCCTGGCTGGTAGCCAC
GTTCCCCGCGCTGAATGCTGCTCTTTGTCGTGCCTCGGCCCTTTGGCCTT
CCTCCCACACGTCCTCGCCTTCCCCCGGCCGTCCGGGACCACCTGGTTCT
CGAATGCATTCGACTTTTGTCAGCATTGGGAAAAACGCTGGCGATGAGAA
GGAGGAGAGAGCCGCCGACGACAACCTCTTGGGAGCCCTCTACTTGCGGG
CCCTCCTCCACCAAGAGAAGGCCTCATCCGCCTTGCCCCCGCCCCCTCCC
TTGCGCGACGAAGAGGAGATAGACGCGGCTCTGGCTGTCCTTTCCGTGCA
AAGAGCTATGGATAGTGGCGGGCTGAGGTATGGGTGGGGCGCCATGCCGG
TCCACTTCTTTCAGGAGCACGCGGTCCGGAAGCTCGAGCGCGCTGGTAGC
CCGCCATCACTGACGCGATTGCTGGAGGAAGGGTATGGGATGGGTGGGGA
GAAGAACCACCTCCTCCCTGTGTGCTGGGAGCACGTCCGCCGGCACGTCC
ATGGCGGGCCAGAACGAGAGTCGGCGGGGGGAGGAGCGAGCAAGGGAAGC
ACGGACACATGCCAACCAGGCTGGGGACCTGAGGCGAGGCAGGTTGCGCC
AGGAGAGCCTTCTACTTGCATCACTCGGGCGTGTCATGTCCAGATAGACA
TGGTGATCGTGCACGCCGCTCGGTGGGGCCTGTTGCCTGACGAGGAGGCG
GAAAAAACAAACTTCCGTCGCTCCCTCCTCTCCTTGGTTCAGGGATCTTC
CGGCGTGATGACCGTGTGGGAGCTGAGCATCTGGCTGATCATGGCTTGTG
GGAAAGGGGAGGAGGAAGTTCTTCCTTTGCTTCTCTGGGGGCGTCTCCCT
CCAAAGCGAAGTCAAGAACGAGGCCTCAGAGATGGACGTGTAGGACAGGA
CAACGGCGCCTTAGCCGACGAAACTGTCACAGCACTTGACTCACAGATGC
CCGAGATAAACGGAGCTCTGACTCAGTGTGGTCTTTCTACAAGGGCGGTG
GTACTTAGCTGGTTCACCCACTCCTTCTGGGGGGCTTTGTCTGTCACCGA
ACTTGCCATTAGCGAGACTCTGTACATCCTTCACGGCCCAGCTATGCGGG
TTGGTGTGGCATTGAGCCTCTTCAAGTTCATGAGGGAAGATCTTCTGGTG
GCGGCCGCGCGTCAATACGACGTAATTCGTGTGAGTCACATAGTTGAGGC
AAGCTTGAAGCGGTTCGAGTTCACGCCCCAAGTGATGGAGGGCTTACGGG
AGGCGCACGCAAGACTAGACCAAAAGGTCCAAAAAAGAATGTAACTACGA
AAAGACTAAGCAATTGGCAAATCAC

protein sequence of rna9268

>rna9268-protein ID=rna9268-protein|Name=rna9268|organism=Nannochloropsis gaditana|type=polypeptide|length=483bp
MGASVKKGGAEDGDDGGAELSEKVKEAAGEVEGEVRSAVENAEHLAAQII
SDIEDRAKKEEDPGAVATEEGENKAAGAPTESALGRKQAEAALKHFAGYE
SRGKELRFDTLTRAAEEALAQGEALRNHLEQTLLKDLAVLSNEALQLRVV
QLVGELQERTKWEALRLHEAVRKAEMEVSGKYVELIRKLREESVEEVGRQ
SRALEAEKQVALLKAMEEKDKACKTLLEEEMRSFTANVTAAFEQERAQDR
ALVEAQAKRELENVLYERETGYQAALAGRLEELGRLKGEVEALEAVFETD
TDYEHVSWKVHRVSAALLAFELALQSSQPLRREIAALQHVTKGDPVLDAV
LAGLPPAASEGVPTPSELQVRFPMVQKAAREAAFVPESSPGMVGHMFAGL
LAAVTIQPRGLVEGSGADETLARAAYHVERGHLAEAVQELEGLGGLAGRT
VEDWLQDARGRLELTQAARAMNARSALLNVSMV

mRNA from alignment at KK037252.1:248143..250419+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9268 ID=rna9268|Name=rna9268|organism=Nannochloropsis gaditana|type=mRNA|length=2277bp|location=Sequence derived from alignment at KK037252.1:248143..250419+ (Nannochloropsis gaditana)
CATCACTACAGATTGTCGGGCGGTGCGGGGCCAGGAATTGCTTGGGCAGA
GGGTCATAGAAAGCGGCTCCCAGTTTGAGGTGTATCAAGCAAATAGCGAT
CGAACCTTGATGAGCATGCTTTCCTCACGACGCCGCGCCGCGGTACCAAA
CTTTGTAATGCTCGGTCAACGATGGCTTGCTGTGTCCCCATCACCATACT
TGCGGGCGTTGTCGACAAAaccgcccctttcctcgcgccctcccaaCCTG
TACaaggctcctcctccaggccctaAAGCTCCACGAGgcaacccccctcc
tcccgccggcccCGAGCCGCCCGCTCAGAAAGCATCCGGCGGATTCGGCT
TGGGCGCAGCTCTTGGCATGATTGTGCTCGCTGGCGGGACTGCCGCAACG
GGGTATTACTATGTGCTTGCGGACCAAAATGAGAAATCTCAAATGGAGGG
TTACCTCGCGAAAGTCAAGTCAACCGTaggcctgcccccccccttgagAT
CGAGACACCACCGACTGGAGATGCCACGAGCAATCGAGAAAATGAAGTGA
AGAACGCAAAAGGCGATGTTGAAGCAGCTACTGCCGGGGCTGCGGCAAGT
GTGAAGACAGAGCTTCAGAAAGCTACGACACGGGCATCACAGGCGGTGCA
TGCCGTCGAGGAAAAGGTCGCCACCGCACTGCGGGGGGGCAAAGAGGCTC
CTACGTCCGGTAGAGAAAATAGTATGGGTGCATCAgtgaaaaagggaggg
gcggaggatgggGATGACGGAGGTGCAGAGCTGTCggagaaggtgaagga
ggcggcgggggaggtggagggagaggtccgTTCCGCCGTCGAAAATGCCG
AGCACCTTGCAGCCCAGATAATCTCTGACATCGAGGATCgtgcgaagaag
gaggaagacccggGCGCGGTggccacggaggaaggagagaacaAGGCAGC
CGGGGCGCCCACCGAGTCGGCCctagggaggaagcaggcggaAGCGGCTC
TCAAGCACTTTGCCGGCTACGAGTctcgggggaaggagcttCGCTTCGAC
ACGCTGACGCGTGCCGCGGaagaggccttggcccagGGGGAGGCCCTCCG
CAACCACCTGGAGCAGACCCTCCTGAAGGACCTGGCAGTCTTGAGTAACG
AAGCCTTGCAACTCAGAGTCGTTCAGCTGGTGGGGGAGCTGCAGGAGCGC
ACGAAATGGGAGGCACTGCGCTTGCACGAGGCAGTGCGgaaggcggagat
ggaggtgagcGGGAAATACGTGGAGCTGATccgaaaattgcgcgaagaaa
gcgtggaggaggtaggtCGACAAAGCCGGGCGTTAGAGGCGGAGAAGCAA
GTGGCGCTGttgaaggcgatggaggagaaggacaaggcatGCAAGACGCT
CttagaggaggagatgcgctCTTTTACCGCCAATGTGACGGCGGCGTTCG
AGCAGGAGCGGGCGCAGGATCgggccctggtggaggcccaAGCCAAGCGG
GAGCTAGAGAACGTCCTGTACGAGAGGGAGACCGGCTACCaagccgcctt
ggccgggcggttggaggagctggggcggctcaagggagaggtggaggcgt
tggaagcGGTTTTTGAGACGGACACGGACTACGAACACGTGTCCTGGAAG
GTGCACAGGGTGAGCGCCGCCTTGCTGGCCTTTGAATTGGCGTTACAAAG
CTCCCAGCCGTTACGCAGGGAGATCGCGGCCCTCCAGCACGTGACCAAGG
GTGACCCTGTGCTGGACGCAGTGCTCGCCGGCCTTCCGCCCGCGGCTTCC
GAGGGTGTGCCCACCCCGTCGGAGCTCCAGGTCCGCTTCCCCATGGTGCA
AAAAGCGGCGCGAGAGGCGGCTTTCGTCCCCGAGTCGAGCCCCGGGATGG
TCGGGCACATGTTCGCCGGCCTTCTAGCGGCCGTCACCATCCAGCCACGG
GGTCTGGTGGAAGGCTCGGGGGCCGACGAGACGCTGGCACGGGCGGCCTA
CCACGTGGAGCGCGGGCACCTAGCCGAGGCAGTGCAGGAGCTGGAAGGCC
TGGGGGGGTTGGCGGGTCGGACGGTGGAGGATTGGTTGCAAGACGCGCGG
GGAAGATTGGAACTGACGCAGGCGGCGCGGGCGATGAATGCCCGCTCTGC
CTTGTTGAATGTTAGCATGGTATAGAGGGGGGATAGAGGACGGGAcgcga
gggagcgggggcgtGCGAGCGGAGGCGCTgtcggcgggagggggaaccCC
GTAAAGAAGAAGTAGACCACATagcga

Coding sequence (CDS) from alignment at KK037252.1:248143..250419+

>rna9268 ID=rna9268|Name=rna9268|organism=Nannochloropsis gaditana|type=CDS|length=1452bp|location=Sequence derived from alignment at KK037252.1:248143..250419+ (Nannochloropsis gaditana)
ATGGGTGCATCAgtgaaaaagggaggggcggaggatgggGATGACGGAGG
TGCAGAGCTGTCggagaaggtgaaggaggcggcgggggaggtggagggag
aggtccgTTCCGCCGTCGAAAATGCCGAGCACCTTGCAGCCCAGATAATC
TCTGACATCGAGGATCgtgcgaagaaggaggaagacccggGCGCGGTggc
cacggaggaaggagagaacaAGGCAGCCGGGGCGCCCACCGAGTCGGCCc
tagggaggaagcaggcggaAGCGGCTCTCAAGCACTTTGCCGGCTACGAG
TctcgggggaaggagcttCGCTTCGACACGCTGACGCGTGCCGCGGaaga
ggccttggcccagGGGGAGGCCCTCCGCAACCACCTGGAGCAGACCCTCC
TGAAGGACCTGGCAGTCTTGAGTAACGAAGCCTTGCAACTCAGAGTCGTT
CAGCTGGTGGGGGAGCTGCAGGAGCGCACGAAATGGGAGGCACTGCGCTT
GCACGAGGCAGTGCGgaaggcggagatggaggtgagcGGGAAATACGTGG
AGCTGATccgaaaattgcgcgaagaaagcgtggaggaggtaggtCGACAA
AGCCGGGCGTTAGAGGCGGAGAAGCAAGTGGCGCTGttgaaggcgatgga
ggagaaggacaaggcatGCAAGACGCTCttagaggaggagatgcgctCTT
TTACCGCCAATGTGACGGCGGCGTTCGAGCAGGAGCGGGCGCAGGATCgg
gccctggtggaggcccaAGCCAAGCGGGAGCTAGAGAACGTCCTGTACGA
GAGGGAGACCGGCTACCaagccgccttggccgggcggttggaggagctgg
ggcggctcaagggagaggtggaggcgttggaagcGGTTTTTGAGACGGAC
ACGGACTACGAACACGTGTCCTGGAAGGTGCACAGGGTGAGCGCCGCCTT
GCTGGCCTTTGAATTGGCGTTACAAAGCTCCCAGCCGTTACGCAGGGAGA
TCGCGGCCCTCCAGCACGTGACCAAGGGTGACCCTGTGCTGGACGCAGTG
CTCGCCGGCCTTCCGCCCGCGGCTTCCGAGGGTGTGCCCACCCCGTCGGA
GCTCCAGGTCCGCTTCCCCATGGTGCAAAAAGCGGCGCGAGAGGCGGCTT
TCGTCCCCGAGTCGAGCCCCGGGATGGTCGGGCACATGTTCGCCGGCCTT
CTAGCGGCCGTCACCATCCAGCCACGGGGTCTGGTGGAAGGCTCGGGGGC
CGACGAGACGCTGGCACGGGCGGCCTACCACGTGGAGCGCGGGCACCTAG
CCGAGGCAGTGCAGGAGCTGGAAGGCCTGGGGGGGTTGGCGGGTCGGACG
GTGGAGGATTGGTTGCAAGACGCGCGGGGAAGATTGGAACTGACGCAGGC
GGCGCGGGCGATGAATGCCCGCTCTGCCTTGTTGAATGTTAGCATGGTAT
AG

Synonyms

Publications