rna9256, rna9256 (mRNA) Nannochloropsis gaditana

Overview
Namerna9256
Unique Namerna9256
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3117
Alignment locationKK037252.1:218275..219612 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100019g13.474.mrna
Orig protein idgnl|cribi|Naga_100019g13.474
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:218275..219612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g13gene8978Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21452.1cds9226Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9256rna9256-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9256 ID=rna9256|Name=rna9256|organism=Nannochloropsis gaditana|type=mRNA|length=3117bp
GCCACTGGCTTGTCACATCTACTGTCTTCGATGGCATGGCTTTCGTGCTC
TGCATTTTGTGTGAACGGTACACGAAGTGTTTCGAGCGCAGCGAATCGAG
CTTATAGCGCGTAACTTATCTTTGCGCAACGAAATGCGTCGCTAAATCTT
CACTTCCATCGCTTCGTCTAAGGGGATTTCACTAGGAACACGAAGCATTT
CAACGCGGCATAGCGCATGGCCTTCTTCGTGATCATCGTTGCCGTTGCCT
TACTTGTGTTGCTGTCCAGGGTTGTCTACCATTTCCTGTGTCGGCGGCCT
GGTTTAAAGGATGACTGGCCGTGTGTGCCTGATTGCCGTGTTCAGGAACG
TGTCGGCAAGTGGCCTACCTTACCACGTGGGAGGCTGAAGTATATTACAG
CCACCGAGTTCCGAACGCTCTGCGCATTGTGCGATACTGTTTTACCGGCC
TTTGAGGCCGAGGACGTACCAAAAGCCATACGAGCGTATTTGATGGAATT
GGTGGGCTCCGATGACCTGTTTGAGAGGCTGAGCACGGACATGAGCTACT
ACACTCGTGGAGCCCTGGATGCGGATGTACCCGCACGGGTGGGGGACATC
GTCGAGGAAGACCTCCGTCCTGATGCACGAAAAATCGTACGCATGGTTTT
GTATGCTCTTGAGATGCCGTTGGGTCTCTTTTTCTTGACTGGCGGGACCT
GGTATGGATGGGGCACCGGCTTTTCTAGCATGCCCTTTCGTCAGCGGGAG
GCGGTCTTCGGGCGCCTTCTTACGAGCATCATCGAGCCAATTCGAGGCCT
CGCTATTTTGATAAAGGCAATGGCGGGTCGTATCTACTTTGCAGCACGAG
ATACTCCACCGAGCACACCAGGCGGTACTCCGACCAACCCTTCCTGGACA
GCCTTGGGATATCAAGACCGGACACGCGACAGGGTACGGAGCGTGATGGG
CGGGAAGCCACTCCGCAAACCACAGCTTCATCCACTGCGGAGAGATTCCA
TTCCACCTTCCTGTGTGGGAGGCGGTACAGACGTCCGCGAACTAAGTTGT
GACGTTGTCATTGTGGGGTCGGGCGCCGGTGGAGGGACCGCTGCCGGCGT
CCTGACCGCCGCAGGCTTGAAAGTGGTTGTGCTGGAGAAAGGAGGGTATT
ACTCCGAGGAAGACTTCGCAGGATTCGGGGAGTTGGACTCTGAAAGGGCC
CTTTGCGAGCGGTCGGGGTGGATGGGCGCGCAAGAGTTGAGTGTCTCTAT
ATTGGCCGGTTCCTGTGTCGGCGGCGGCACCACTCTGAATTGGTGCGCTT
CCTTTCGGACCCCCGAGCACGTGCGACGAGAGTGGGTGGACAAGCATGGC
CTGACATGCTTTGGAGGCGCCGAGTACGACCAGGCTTTGGACGCGGTGGC
CCGCCGCCTAAACCTGAACACTCGACACTCGCACCGGAACCCGGAGGTAG
CTTCCGTGCCCTCCCTGGTCGTGAATCAGAACAATGAACGCCTCTGGCAA
GGCGCGAAGGCGGTGGGTGCCAGGTGCCTTCCTGTCCCTCGCAACGTGCG
AGGCTGCGAAGACTGCAGCGGGTGCGAGCGGGGCTGTCCCTACGGCGCGA
AGCAGTCGACGCTCCGGACCTTTTTGGAGGACGCAGAAAATACGGGCAAT
TTTAAACTGGTGGCTCGCGCCCACGTCGACAAGGTGCTTAGAAATGACGA
CAACGATGCCGTCGGTGTCATTGCTACGGTGCACGAGGAAAGGCGGTTGG
CGGAGGGGAGAGAAAGTGACGGCGAGGGGAGGCCTCCCTCTGGCCATCGC
CCTGGCCCTTCGACCTCTTCGCGATATCAATTGATCGTATGGGCTCATCA
CGCCGTTATCCTTTCAGCAGGGTCGCTCCACTCCCCCGCGGTGCTCCTGC
GCTCTGGCTTGAAGCACCATAAGATTGGACGGCACCTTGCGTTGCACCCC
GTATCCGGTGTTGCCGGGCTTTTCCCCTCAGAGACCTCAGACACGCACTT
AGGGGTGGGCATGGGAACCTATGTTTCGGATTTCATGGGGGGTGAGATGA
AGGATGGGTGGGGAGGCGCGATTGAGACCCCCCCTAGCCACGCGGGTCTG
GCAGGAGTGATCGCACCTTACGGGACAGCATTCAACTACCGCATGTGGGT
GGCTCTGAAAGGGCACTATGCCGTCTCCATTGTGATCAGTCGGGACGAGT
CCTGTGCTGCGAATCGAGTGGTGATCGACAATGATGGGGAACCCCAGGTG
CACTATCTGTTGACCAAGAAGGACCAAGCGAATCTCCAGTATTCTGTAGG
GGTGATGCTAAAAATGATGATCGCGCAAGGAGCGGCACTAGCATTGCCTG
TGAATGAAAGCATGCGCACCTACCGACCGCACCGAGATGAGGCTTCGGGA
ACTACGAGGGGCGGCAAAGGGATGAGTGAGTATTTAAAATATGTGCGGAA
GATGGGCACGCCAGTTGGCAACACGGCATTATTTTCGGCGCACCAAATGT
GCTCTTGCCGAATGGGATCGACAGAGGAGGCAGGGCCAGTGCAAGTGACG
GGGGAAACTTGGGAGGTTGAGAAGCTCTACGTTATGGATGCAAGCGTGTT
CCCAACGTCCTTGGGCATCAACCCGATGGTGACAATAGAAAGCATATCTT
TCATGCTGAGCAAAAAACTGGCTGTAAAAATCAAAGGTCCCGACGCGGAA
AAGGCCATCTCCGTAAAGTATTGCGTTCCAAGCACTGAGGAGGCCATTGG
AAACGTTTCTTACCCAGAAGGCCCGACATTAAAAGGGGAGTACTGTGCGT
GGTAATCGAAACGCCCAAAAAGAAAGCCTCATTGCACGTCCTACTAAAAA
GGGGACGTTAGCTTGGAGAGGCTTGTATTTTCCTGATAATAGCTCTCTTT
AGAAAGTGTAAAAGTAGAAAGGTGGAGCAGCATGTTGCAGGACTGTGTGA
AGCAGTACTGCACAATATGACTATCGAACGTGAGGCATGTCAAAAAGCAG
TGTTAAAACTCGAAAGAACGTAGATTGTAAAGTAATGAGGATGAAGCAAT
CAGTTATAATGCACATAAAGGAGGAGGCTAGAATTTCATGATGGAGGAAA
GTAGAGCGTGCTATACA
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protein sequence of rna9256

>rna9256-protein ID=rna9256-protein|Name=rna9256|organism=Nannochloropsis gaditana|type=polypeptide|length=248bp
MAKAQFDPSASLPSRKGRNWTIGVSLTLIVLVAAATGTYFHFSSQKLRNV
SGRDVAAAATTLEEPILTRTISRLRRHLAWGAADVEEDNVIEDIHDTLDE
APGVPEDDDTPKKKKKKKFSFDDNLDDDLGDEADMSDDDMGDDDVPGDDA
DVGPKRPKKKGKATTKKGSKKKPVGKKGRGRTDDSPVVINARPGGGASRV
SRGGGRSSPEDGKKDPLTPTLDTRDTRRYADEVVLPDGHTVHIDVPSP
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mRNA from alignment at KK037252.1:218275..219612-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9256 ID=rna9256|Name=rna9256|organism=Nannochloropsis gaditana|type=mRNA|length=1338bp|location=Sequence derived from alignment at KK037252.1:218275..219612- (Nannochloropsis gaditana)
TGAAAAACTGCTTACACGGTGAATGGAGTATTTCGAGTGCCGTGCGTGTC GCAAAACTCAGGCTCCAGAGGAGCTAGCTGTTTCTTTTTGTTCCGGTCGG AGGGATCGCGGCGAAAAGGATATGGCAAAAGGGCGGCCATCCTTTTTGGC TAAAAAATGAATTATATTGTAACCTGACATCTTATTTGCTTTGTAATTAT ATGAAAAATGACCCTGTCTTTTCCTAAGTATCCAACCTTTCTTGTCTACC GGCTACTTCCCCCTTAGGCTCTCCATTTTCCATGGCAAAAGCACAGTTTG ACCCTTCAGCGTCCTTACCCTCAAGGAAGGGTAGAAACTGGACAATTGGT GTAAGTCTGACCTTAATTGTACTTGTAGCAGCGGCTACGGGCACATATTT TCATTTCTCTAGTCAAAAGTTGCGGAACGTCTCTGGAAGAGATGTGGCTG CCGCGGCCACTACCCTTGAGGAACCTATCTTGACAAGAACAATCAGTCGG CTACGACGACATTTAGCATGGGGTGCCGCAGATGTCGAAGAAGATAATGT CATAGAGGACATCCACGATACGCTTGACGAGGCTCCGGGAGTGCCTGAGG ATGACGACACCCCCAAAAAGAAGAAAAAGAAGAAGTTCAGTTTTGACGAC AATCTTGATGATGACTTGGGTGATGAGGCTGATATGAGTGACGACGATAT GGGAGACGATGATGTACCTGGGGACGACGCAGACGTGGGCCCCAAAAGAC CCAAGAAGAAGGGAAAGGCTACAACAAAGAAAGGGAGCAAAAAGAAGCCG GTCGGCAAGAAAGGGAGAGGGAGAACAGACGATAGTCCGGTCGTTATTAA TGCTCGTCCCGGAGGGGGGGCATCGCGAGTCTCCCGCGGCGGGGGAAGAT CAAGCCCAGAGGACGGGAAAAAAGATCCTCTGACCCCCACGCTAGATACC CGGGACACTCGACGCTATGCGGATGAAGTCGTACTTCCGGACGGACACAC TGTACACATTGATGTCCCTAGCCCTTAGACTATATTCATGACCCAGGCCA GGGCAATGCCTGGATCGATGAGTGTACATATGGGTGTAAAAAGCCGTAAG TAGACATGACAGCGTCGGAAATAGTTTATTGCATCTTGTATTACCTTCTC ACAAAGGAAAGTTATTGCAACGCTTGATCTGTCTTCGAAATGCTTCAATA AAAGATAATCGTAGAAAACGTAATTGTGGACCAGGCGCTGGGATCCGCTC CCACAGACGCATGTGACTTATCTAAAACCACAAGAGTTGCAAAGCGAGTC AGTTCAAGGTTACGTGAAACTTTTCAAGACTTCGATCG
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Coding sequence (CDS) from alignment at KK037252.1:218275..219612-

>rna9256 ID=rna9256|Name=rna9256|organism=Nannochloropsis gaditana|type=CDS|length=747bp|location=Sequence derived from alignment at KK037252.1:218275..219612- (Nannochloropsis gaditana)
ATGGCAAAAGCACAGTTTGACCCTTCAGCGTCCTTACCCTCAAGGAAGGG
TAGAAACTGGACAATTGGTGTAAGTCTGACCTTAATTGTACTTGTAGCAG
CGGCTACGGGCACATATTTTCATTTCTCTAGTCAAAAGTTGCGGAACGTC
TCTGGAAGAGATGTGGCTGCCGCGGCCACTACCCTTGAGGAACCTATCTT
GACAAGAACAATCAGTCGGCTACGACGACATTTAGCATGGGGTGCCGCAG
ATGTCGAAGAAGATAATGTCATAGAGGACATCCACGATACGCTTGACGAG
GCTCCGGGAGTGCCTGAGGATGACGACACCCCCAAAAAGAAGAAAAAGAA
GAAGTTCAGTTTTGACGACAATCTTGATGATGACTTGGGTGATGAGGCTG
ATATGAGTGACGACGATATGGGAGACGATGATGTACCTGGGGACGACGCA
GACGTGGGCCCCAAAAGACCCAAGAAGAAGGGAAAGGCTACAACAAAGAA
AGGGAGCAAAAAGAAGCCGGTCGGCAAGAAAGGGAGAGGGAGAACAGACG
ATAGTCCGGTCGTTATTAATGCTCGTCCCGGAGGGGGGGCATCGCGAGTC
TCCCGCGGCGGGGGAAGATCAAGCCCAGAGGACGGGAAAAAAGATCCTCT
GACCCCCACGCTAGATACCCGGGACACTCGACGCTATGCGGATGAAGTCG
TACTTCCGGACGGACACACTGTACACATTGATGTCCCTAGCCCTTAG
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Synonyms
Publications