rna9245, rna9245 (mRNA) Nannochloropsis gaditana

Overview
Namerna9245
Unique Namerna9245
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1739
Alignment locationKK037252.1:187542..189469 -

Link to JBrowse

Properties
Property NameValue
Productudp-galactose translocator
Orig transcript idgnl|cribi|Naga_100019g26.519.mrna
Orig protein idgnl|cribi|Naga_100019g26.519
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:187542..189469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g26gene8967Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21497.1cds9215Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9245rna9245-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9245 ID=rna9245|Name=rna9245|organism=Nannochloropsis gaditana|type=mRNA|length=1739bp
GTGTTCCCACAGTTCGTCGTACAGATTACCATGCCTGTTCCGCCTCTGTT
TCCCGCCGCAGCGGCTATTGGGTCTTCGCTACTACCAATTTTTCCCACAT
CTAGGTATATTTGTGTCGCAGGCACGTATGACGGCGGCATAGCAGGCTGG
GAATTGCAGCGGGAAGGGCAAAATCAGACAACAGGCCTGAAGATGGTACG
TACGTCAACCGAGCTTTACCAACAAAACGCATGATTCGATTCTTGATACA
GGATTGGCGGAAAGATTCTTTTTTGTATCCTTGTGAAGATATGGCAGTAA
GAAAGCGATTGATCGGGGCTTATGTCCACGTTCCCTTCTCGCAGATTTTT
GCCTACACCCCGCATCAAGGAAGCGTCCGATCGCTGGCTATACCACAAGG
GGGGGTCAAAGCTGGGTCTCTTTTAGTGTCAGGTGGTGTTGACGAGCATA
TCCGCATGTATGACCTACGAAAACGCGCGGAAGTCGGCGAGCTTCTACAC
CATAAGGGTACCATAACCGCCCTGGGCTTTGTGGGCTCATCCCACTTGCT
GAGCGGTAGTGAGGATGGTGCGGTCTGCATATGGCGCGTGTACGATTGGA
GCCTTCTTCATATTTTGGGTGGACACAAGGGAGCTATCACTGCCGTCGCT
ATACACCCGTCTGGGAAGCTCGCCTTGTCCTCAGGGCGCGATAGGAGTCT
GCGTCTCTGGGATCTGGTTCGTGGCCGTTGCGCCTACATCACCAAGCTCG
AAGCGGTGGTCGAGACCGTCAAATGGTCTGGCGATGGGAGCGTCTATGCG
CTTCAAGTGGGAGATCGTCGCCTGGAGGTACGAAGAGCGTCGGATAACAA
GCCCACGGCCATCGCCACCCACCCCGCGCGTGTCACAGCCATCGCCTTCC
TCCCTGCCGCTGCCGCCGCCCCGTGTGCTGATGAAGCTAAAAGCTTAGAG
ATTTCTGCGGCGATAGAGCAGCAGGCACCGATGCACCATGTGGTCACGGC
CTGCGACGACGGCATGCTGCGCGTCGTGGATGGAGACACGGGGTCCGTCC
TTTCCTGCACGGAGACGGGCCCGCACTGCGGACGCATCAAGGAGGCTGTG
GTCTGGGGGAACAGGGCCTTGCCCTTCTGGCAACAAAGCCGAGAGCTGGT
GACGGCGTCATCGGATGGGAAGATCCTGGTCTGGCGGGTCGGGCCCGCGG
GCACACAGGTGGAGGTGGGACCCGGCGCCGCTTTGGGTGCCGGAGTACGC
ATAACGTGCTTGGCAGCCTACGCTGCTGGCGAGGCCGTGGACGAGGGGAG
GGCTTCAAGCGGGACAAGTCTTGGCAAGAATAAAAAGAAACGAAAGCGGG
TGCGTGGGGAGGAGACGAAGGAGGCTAACATGGGACCGGACAGGGCCGCG
CCTCGAAAAGGCGAAACTGCGCGGAAGTCCAAGGGAAACAGGCATCGCTC
AGCGAATCGAGGGTCTGGAATGCAAAGTAATGGGGCGCCAAGTAGAGGGA
AAAGCCGAGCGCAGGCATCAAGCAGGGCGAATGTCTGAGCCAGTATCTGC
GGTCATCATGCGCGGGAAACACGCTCGCAACGAGGCCTGAATTTGACTTC
ATAGCATCCCATCGTTTTTGGAAAGAGCAAATAAAAGTGACTGGATGCTC
TGGAGGCGAATCAATGATATCAAAAGCTTATAAAGTAATTGTATCGCCTC
CTAACACATGAAGAAAAGCTCATAAATCGTTCCCAAGAT
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protein sequence of rna9245

>rna9245-protein ID=rna9245-protein|Name=rna9245|organism=Nannochloropsis gaditana|type=polypeptide|length=402bp
MHSIFGGMKRADTCKYVALLVLVLQNSAVVLTVRYSRMRKDVMYISSTAV
VMSEIVKLVVASFLVGMEEGGLCGLGSKLYHDIVLKPADFAKLLVPAFLF
TIQNNLLFVALSNLDAASFQVLYQLKILTTAVFSVVLLNRQLTCRQWLSL
LVLIVGVSLVQTSGLKDGSTSSTAGRNGSTSLGFVCVLLASCSSGFAGTY
FEKVLKDSEISVWVRNVELALIGIPVGVFGVWYTDGAAVREAGFFSGYSP
LVWSVVGLQAVGGIAIALVVKYADSVLKNFSTSVSIVVSCLVSYVVFGET
DLSPQFLAGVSLVMYSTFLYGTSSSGMCCLSEGGSFTPNKGVARKESNKV
WSVACCAKQAASTRDDPLASVPFLESADKENRQRKDCESHGNKSNRVSAS
VA
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mRNA from alignment at KK037252.1:187542..189469-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9245 ID=rna9245|Name=rna9245|organism=Nannochloropsis gaditana|type=mRNA|length=1928bp|location=Sequence derived from alignment at KK037252.1:187542..189469- (Nannochloropsis gaditana)
GGTGACATAGAGATGGGGCAGTCGAAAGACCATGACATGTTGCCGGCCCA
TTAGCGTAACGCTGATCGAGTCCCAAATTAATACATTTAAATGGGACCTG
CGAGTTAAGACTCATGCTATATCTTTTTCAAACCGTACATGGACAATTGA
AGAAGATCGAGAGGCTAAACAGGAGACATTTACATGTGAGCGGCTGATGA
AAATCGTGCAGGCCTCCGTGACTATGTACACGAATTCAACTGAATTTGGT
GGGATCTGTTCTCAAACTTTCTCATTTTTATGCAGCACAAGCACGACAGG
AACACTTCGGTAAGAGAGAACCCTAATTCACAAAAGAGGTCATCTTAAAC
CTCTTTTTCGCCATCTTTGGCGGGGCAGGCCAGCCAAATACGATGCATTC
CATCTTTGGGGGCATGAAGCGGGCGGACACCTGCAAGTATGTGGCGCTTT
TGGTCTTAGTTCTCCAGAACTCTGCGGTAGTTCTGACTGTGCGCTACTCA
CGGATGAGGAAGGATGTAATGTACATTTCTAGCACGGCCGTGGTCATGTC
AGAGATTGTGAAGCTCGTCGTAGCTTCGTTCCTGGTCGGCATGGAGGAAG
GGGGCTTGTGTGGGCTGGGCAGTAAACTCTACCATGACATAGTGCTGAAA
CCTGCCGATTTTGCGAAACTTCTGGTCCCTGCATTCCTTTTCACGATTCA
AAACAATTTGTTATTCGTCGCGCTTTCAAACTTGGATGCCGCTAGCTTTC
AAGTACTCTACCAGCTCAAAATATTGACCACGGCTGTCTTCTCCGTTGTC
CTCCTTAACCGGCAACTAACCTGCAGACAATGGCTGTCTCTATTGGTCTT
AATAGTCGGGGTCTCTCTCGTTCAAACGTCGGGTTTGAAAGACGGAAGCA
CGTCGAGTACGGCTGGCAGAAACGGCAGCACGTCACTTGGATTCGTCTGC
GTATTACTGGCTAGCTGCTCGAGCGGGTTCGCGGGAACCTATTTTGAGAA
GGTTCTGAAGGACTCCGAGATCTCCGTGTGGGTGCGAAACGTGGAGCTGG
CCCTGATCGGTATCCCTGTGGGCGTCTTTGGCGTTTGGTACACAGATGGG
GCCGCCGTGCGCGAGGCCGGCTTTTTCTCTGGCTACAGCCCGCTCGTCTG
GTCCGTGGTCGGGCTCCAGGCCGTGGGCGGTATTGCCATTGCTTTGGTGG
TCAAGTACGCGGACTCAGTCCTCAAGAACTTCTCTACGTCCGTTTCCATT
GTTGTCTCCTGCCTGGTGTCCTACGTGGTCTTCGGGGAGACCGACCTCTC
CCCTCAATTTCTGGCTGGTGTCAGCTTGGTCATGTACTCCACCTTTTTGT
ACGGCACAAGCTCTTCTGGGATGTGCTGCCTCTCCGAGGGTGGTTCTTTT
ACCCCAAATAAGGGCGTGGCTAGGAAGGAAAGCAATAAGGTCTGGTCTGT
GGCCTGCTGCGCCAAGCAAGCTGCGAGTACACGTGATGACCCTCTCGCAA
GCGTCCCGTTCCTGGAATCTGCGGACAAGGAAAACCGTCAGAGGAAGGAT
TGCGAGTCTCATGGCAATAAATCTAATAGGGTCAGTGCATCCGTCGCATG
ATGAGAGTGCCGTAGAAATGCTGAGAGGAAAGGCGCGTTATCGTACCCAC
TATCCGTCTCCTAACCTCTCAAGGGGGCTACGATAGTTTTGACGCGAGAC
AGCCAGTGATGAACGGAACAGTCGCTAATGTAATGGTATCAACAGTTGCT
CGTGGTATCTTGGGAACGATTTATGAGCTTTTCTTCATGTGTTAGGAGGC
GATACAATTACTTTATAAGCTTTTGATATCATTGATTCGCCTCCAGAGCA
TCCAGTCACTTTTATTTGCTCTTTCCAAAAACGATGGGATGCTATGAAGT
CAAATTCAGGCCTCGTTGCGAGCGTGTT
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Coding sequence (CDS) from alignment at KK037252.1:187542..189469-

>rna9245 ID=rna9245|Name=rna9245|organism=Nannochloropsis gaditana|type=CDS|length=1209bp|location=Sequence derived from alignment at KK037252.1:187542..189469- (Nannochloropsis gaditana)
ATGCATTCCATCTTTGGGGGCATGAAGCGGGCGGACACCTGCAAGTATGT
GGCGCTTTTGGTCTTAGTTCTCCAGAACTCTGCGGTAGTTCTGACTGTGC
GCTACTCACGGATGAGGAAGGATGTAATGTACATTTCTAGCACGGCCGTG
GTCATGTCAGAGATTGTGAAGCTCGTCGTAGCTTCGTTCCTGGTCGGCAT
GGAGGAAGGGGGCTTGTGTGGGCTGGGCAGTAAACTCTACCATGACATAG
TGCTGAAACCTGCCGATTTTGCGAAACTTCTGGTCCCTGCATTCCTTTTC
ACGATTCAAAACAATTTGTTATTCGTCGCGCTTTCAAACTTGGATGCCGC
TAGCTTTCAAGTACTCTACCAGCTCAAAATATTGACCACGGCTGTCTTCT
CCGTTGTCCTCCTTAACCGGCAACTAACCTGCAGACAATGGCTGTCTCTA
TTGGTCTTAATAGTCGGGGTCTCTCTCGTTCAAACGTCGGGTTTGAAAGA
CGGAAGCACGTCGAGTACGGCTGGCAGAAACGGCAGCACGTCACTTGGAT
TCGTCTGCGTATTACTGGCTAGCTGCTCGAGCGGGTTCGCGGGAACCTAT
TTTGAGAAGGTTCTGAAGGACTCCGAGATCTCCGTGTGGGTGCGAAACGT
GGAGCTGGCCCTGATCGGTATCCCTGTGGGCGTCTTTGGCGTTTGGTACA
CAGATGGGGCCGCCGTGCGCGAGGCCGGCTTTTTCTCTGGCTACAGCCCG
CTCGTCTGGTCCGTGGTCGGGCTCCAGGCCGTGGGCGGTATTGCCATTGC
TTTGGTGGTCAAGTACGCGGACTCAGTCCTCAAGAACTTCTCTACGTCCG
TTTCCATTGTTGTCTCCTGCCTGGTGTCCTACGTGGTCTTCGGGGAGACC
GACCTCTCCCCTCAATTTCTGGCTGGTGTCAGCTTGGTCATGTACTCCAC
CTTTTTGTACGGCACAAGCTCTTCTGGGATGTGCTGCCTCTCCGAGGGTG
GTTCTTTTACCCCAAATAAGGGCGTGGCTAGGAAGGAAAGCAATAAGGTC
TGGTCTGTGGCCTGCTGCGCCAAGCAAGCTGCGAGTACACGTGATGACCC
TCTCGCAAGCGTCCCGTTCCTGGAATCTGCGGACAAGGAAAACCGTCAGA
GGAAGGATTGCGAGTCTCATGGCAATAAATCTAATAGGGTCAGTGCATCC
GTCGCATGA
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Synonyms
Publications