rna9233, rna9233 (mRNA) Nannochloropsis gaditana

Overview
Namerna9233
Unique Namerna9233
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length964
Alignment locationKK037252.1:168402..170100 -

Link to JBrowse

Properties
Property NameValue
Productmitochondrial folate transporter carrier-like protein
Orig transcript idgnl|cribi|Naga_100019g39.489.mrna
Orig protein idgnl|cribi|Naga_100019g39.489
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:168402..170100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g39gene8955Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9233rna9233-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21467.1cds9203Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9233 ID=rna9233|Name=rna9233|organism=Nannochloropsis gaditana|type=mRNA|length=964bp
CGCGGCCATGAGCGTGCTGCATTGCAGACGGATATTATAGAATAATACAG
AACTGTCACGTGGACACTATGCAGATGTACTCCAATCTTATATCCGAGCT
AGAATCGAGCTCTTTGCATCGCTTGCTACTTTTCCCGTGCATGCACGACG
ACTCGTTGACGCACCAATCATTTGATCTTACATTTGAAACTCACAAACCT
GGATGCTCCACTCTCTCTGATACAGCGACCGCTGTCCGTCCTCCAAGCCC
GAGACCATGAGCGGTGGAATCGCTCGCGGACGGTTGCAAGAGGAGCGGAA
GGCCTGGCGCAAAGACCATCCCCACGGCTTCGTGGCCCGACCAGTCTTGG
ACGCGGACGGCTCCATGAATCTGATGAGCTGGGACTGCTCGATACCAGGA
AAGGAAGGAACGGACTGGGAGGGGGGTGTTTTCAAGGTGACGATGGAGTT
CTCGGAGGACTACCCCTCCAAGCCTCCCAAGTGCAAATTCGTCCCGGCGC
TCTTCCACCCCAACGTCTATCCCTCGGGCACGGTCTGTCTCTCCATATTA
AACGAGGACGAGGACTGGAGGCCCGCCATCACAGTCAAGCAGATGCTTCT
GGGCATCCAAGACCTATTGGACAGTCCCAACCCGGAGAGTCCCGCGCAGG
CGCAAGCCTACCAGCTCTTCGTCACTAACCGGGAGGAATACCGTCGGCGG
GTGCGCATCGAGGCGAAACGCAACACGCCGGCCTCATAGGAGTTTGGGAG
GCTCTGTCGTGGTTGTACATGTGGTCGCACGAGCGGCAGAGGGCCAGCAG
GGAGAGGGTGGGAGAGAGGGAAGGGAGGAGGGAGGGGGCCCCCGGTGTGC
TTGCCCTGGACCTAAGTGGAGGTGGCTGGCCCTGAATCTGATGTAAGATG
AGATGCGAGGGAACCGACGTATCGCCACAGGTAAAAAATATAACTTGAAG
CAGTAGAAAGCGCC
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protein sequence of rna9233

>rna9233-protein ID=rna9233-protein|Name=rna9233|organism=Nannochloropsis gaditana|type=polypeptide|length=423bp
MISSILDHASHSQEVPSLSTFPPSHASTQYWKQEKSVRLASQFLKVKYTS
SSGPAILSARAKFLRSMNAKAPAQVEDHLVAGLVAGAVSSALLLPLDLIK
VHLQVYDRAGRPFPSMYKGMQSIVQQEGYRGLYKGLTPALLANGLSWGGY
FYFYEHAKNRYLRQHRQITSVHHLLSAFEAGIIMVFLTNPLWLIKTRMQL
QPGGASALESMTKAVTAPIVASTASHLGKQIAYTGVTQALRTIVREEGVL
GLYKGILPALLLTSHGAIQFVTYEWLKKVVEPYQAPVFSFSVLGGMAKIL
AGLVTYPPQVVKARLQQRDTGASRWRYTSTWDCVLKIWRFEGLLGFFKGC
LPNVLKTAPSAVITFLVYEQCVFSFNVLRGKPQGGVDAKTPEDIAENSAD
EKAANGVRNRGSRQISPKRENRD
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mRNA from alignment at KK037252.1:168402..170100-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9233 ID=rna9233|Name=rna9233|organism=Nannochloropsis gaditana|type=mRNA|length=1699bp|location=Sequence derived from alignment at KK037252.1:168402..170100- (Nannochloropsis gaditana)
ATGATCTCTTCCATATTGGACCATGCGTCCCACAGCCAGGAGGTTCCTTC
CTTATCAACGTTTCCTCCAAGCCACGCAAGCACACAATACTGGAAGCAGG
AAAAATCCGTCAGGCTAGCGTCTCAATTTTTAAAAGTGAAGTACACTTCC
TCAAGCGGCCCGGCCATTCTCAGCGCGCGAGCCAAATTTCTCCGCAGCAT
GAACGCCAAAGCCCCCGCCCAAGTAGAGGACCATTTGGTTGCCGGTTTAG
TGGCGGGAGCAGTCTCTTCTGCCCTGTTGCTACCTTTAGATCTCATCAAA
GTCCATCTTCAGGTATACGATCGAGCAGGACGTCCCTTTCCGTCCATGTA
CAAAGGCATGCAAAGTATTGTCCAGCAGGAAGGTTACAGGGGTCTGTACA
AAGGATTGACGCCGGCGCTCCTGGCTAACGGCTTGTCATGGGGCGGATAC
TTCTACTTCTACGAGCACGCTAAAAACCGATATTTGCGTCAGCACCGGCA
AATCACATCGGTGCACCACCTGCTGTCCGCTTTTGAGGCCGGCATAATTA
TGGTCTTCCTCACCAACCCTCTGTGGCTCATCAAGACACGCATGCAGTTG
CAACCGGGTGGAGCATCGGCGCTGGAAAGTATGACCAAAGCAGTGACAGC
CCCTATTGTTGCTTCAACTGCCTCCCATTTAGGCAAGCAAATTGCCTACA
CGGGTGTGACGCAGGCACTGCGGACCATTGTCAGGGAGGAAGGAGTGCTG
GGGCTGTACAAAGGTATTTACGAGCTTGGCAGTGAAAGTTAGGACAGATA
CGTGACTCTCCGTCCATATTTCTCGAGCTTACCGATGAGAAGCCTGTGAG
GGCTCTCTCTCGATTATCATTGTGGCCCCTCTTGATCCCTTGCTGAAGAA
GCCTCACCCTTTTCTCCACTACCCTCGACCAGGAATCCTTCCCGCCCTTC
TCCTCACCTCGCACGGTGCCATTCAGTTTGTCACCTACGAATGGCTGAAG
AAGGTCGTCGAGCCCTATCAAGCGCCCGTCTTCAGCTTTTCCGTACTGGG
CGGCATGGCCAAAATCCTGGCCGGTCTGGTCACCTACCCCCCTCAGGTGG
TTAAGGCCCGGCTGCAGCAGAGGGACACGGGCGCCTCCCGTTGGCGCTAC
ACGAGCACGTGGGACTGCGTGCTCAAGATCTGGCGCTTTGAAGGCTTACT
CGGCTTCTTCAAGGGCTGTCTGCCGAACGTCCTCAAGACCGCGCCCTCCG
CCGTCATCACCTTCCTCGTCTATGAGCAATGCGTGTTCTCATTCAACGTC
CTTCGCGGCAAACCACAGGGCGGGGTGGATGCGAAGACGCCGGAGGACAT
TGCCGAGAACAGCGCAGATGAAAAGGCGGCCAATGGTGTAAGGAACCGAG
GCTCCCGGCAAATCTCTCCGAAACGTGAAAATCGAGACTAAAAATTACGA
ACGAGACAAAGTTTTTGGCGCTTTCTACTGCTTCAAGTTATATTTTTTAC
CTGTGGCGATACGTCGGTTCCCTCGCATCTCATCTTACATCAGATTCAGG
GCCAGCCACCTCCACTTAGGTCCAGGGCAAGCACACCGGGGGCCCCCTCC
CTCCTCCCTTCCCTCTCTCCCACCCTCTCCCTGCTGGCCCTCTGCCGCTC
GTGCGACCACATGTACAACCACGACAGAGCCTCCCAAACTCCTATGAGG
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Coding sequence (CDS) from alignment at KK037252.1:168402..170100-

>rna9233 ID=rna9233|Name=rna9233|organism=Nannochloropsis gaditana|type=CDS|length=2544bp|location=Sequence derived from alignment at KK037252.1:168402..170100- (Nannochloropsis gaditana)
GAATCCTTCCCGCCCTTCTCCTCACCTCGCACGGTGCCATTCAGTTTGTC
ACCTACGAATGGCTGAAGAAGGTCGTCGAGCCCTATCAAGCGCCCGTCTT
CAGCTTTTCCGTACTGGGCGGCATGGCCAAAATCCTGGCCGGTCTGGTCA
CCTACCCCCCTCAGGTGGTTAAGGCCCGGCTGCAGCAGAGGGACACGGGC
GCCTCCCGTTGGCGCTACACGAGCACGTGGGACTGCGTGCTCAAGATCTG
GCGCTTTGAAGGCTTACTCGGCTTCTTCAAGGGCTGTCTGCCGAACGTCC
TCAAGACCGCGCCCTCCGCCGTCATCACCTTCCTCGTCTATGAGCAATGC
GTGTTCTCATTCAACGTCCTTCGCGGCAAACCACAGGGCGGGGTGGATGC
GAAGACGCCGGAGGACATTGCCGAGAACAGCGCAGATGAAAAGGCGGCCA
ATGGTGTAAGGAACCGAGGCTCCCGGCAAATCTCTCCGAAACGTGAAAAT
CGAGACTAAATGATCTCTTCCATATTGGACCATGCGTCCCACAGCCAGGA
GGTTCCTTCCTTATCAACGTTTCCTCCAAGCCACGCAAGCACACAATACT
GGAAGCAGGAAAAATCCGTCAGGCTAGCGTCTCAATTTTTAAAAGTGAAG
TACACTTCCTCAAGCGGCCCGGCCATTCTCAGCGCGCGAGCCAAATTTCT
CCGCAGCATGAACGCCAAAGCCCCCGCCCAAGTAGAGGACCATTTGGTTG
CCGGTTTAGTGGCGGGAGCAGTCTCTTCTGCCCTGTTGCTACCTTTAGAT
CTCATCAAAGTCCATCTTCAGGTATACGATCGAGCAGGACGTCCCTTTCC
GTCCATGTACAAAGGCATGCAAAGTATTGTCCAGCAGGAAGGTTACAGGG
GTCTGTACAAAGGATTGACGCCGGCGCTCCTGGCTAACGGCTTGTCATGG
GGCGGATACTTCTACTTCTACGAGCACGCTAAAAACCGATATTTGCGTCA
GCACCGGCAAATCACATCGGTGCACCACCTGCTGTCCGCTTTTGAGGCCG
GCATAATTATGGTCTTCCTCACCAACCCTCTGTGGCTCATCAAGACACGC
ATGCAGTTGCAACCGGGTGGAGCATCGGCGCTGGAAAGTATGACCAAAGC
AGTGACAGCCCCTATTGTTGCTTCAACTGCCTCCCATTTAGGCAAGCAAA
TTGCCTACACGGGTGTGACGCAGGCACTGCGGACCATTGTCAGGGAGGAA
GGAGTGCTGGGGCTGTACAAAGGAATCCTTCCCGCCCTTCTCCTCACCTC
GCACGGTGCCATTCAGTTTGTCACCTACGAATGGCTGAAGAAGGTCGTCG
AGCCCTATCAAGCGCCCGTCTTCAGCTTTTCCGTACTGGGCGGCATGGCC
AAAATCCTGGCCGGTCTGGTCACCTACCCCCCTCAGGTGGTTAAGGCCCG
GCTGCAGCAGAGGGACACGGGCGCCTCCCGTTGGCGCTACACGAGCACGT
GGGACTGCGTGCTCAAGATCTGGCGCTTTGAAGGCTTACTCGGCTTCTTC
AAGGGCTGTCTGCCGAACGTCCTCAAGACCGCGCCCTCCGCCGTCATCAC
CTTCCTCGTCTATGAGCAATGCGTGTTCTCATTCAACGTCCTTCGCGGCA
AACCACAGGGCGGGGTGGATGCGAAGACGCCGGAGGACATTGCCGAGAAC
AGCGCAGATGAAAAGGCGGCCAATGGTGTAAGGAACCGAGGCTCCCGGCA
AATCTCTCCGAAACGTGAAAATCGAGACTAAATGATCTCTTCCATATTGG
ACCATGCGTCCCACAGCCAGGAGGTTCCTTCCTTATCAACGTTTCCTCCA
AGCCACGCAAGCACACAATACTGGAAGCAGGAAAAATCCGTCAGGCTAGC
GTCTCAATTTTTAAAAGTGAAGTACACTTCCTCAAGCGGCCCGGCCATTC
TCAGCGCGCGAGCCAAATTTCTCCGCAGCATGAACGCCAAAGCCCCCGCC
CAAGTAGAGGACCATTTGGTTGCCGGTTTAGTGGCGGGAGCAGTCTCTTC
TGCCCTGTTGCTACCTTTAGATCTCATCAAAGTCCATCTTCAGGTATACG
ATCGAGCAGGACGTCCCTTTCCGTCCATGTACAAAGGCATGCAAAGTATT
GTCCAGCAGGAAGGTTACAGGGGTCTGTACAAAGGATTGACGCCGGCGCT
CCTGGCTAACGGCTTGTCATGGGGCGGATACTTCTACTTCTACGAGCACG
CTAAAAACCGATATTTGCGTCAGCACCGGCAAATCACATCGGTGCACCAC
CTGCTGTCCGCTTTTGAGGCCGGCATAATTATGGTCTTCCTCACCAACCC
TCTGTGGCTCATCAAGACACGCATGCAGTTGCAACCGGGTGGAGCATCGG
CGCTGGAAAGTATGACCAAAGCAGTGACAGCCCCTATTGTTGCTTCAACT
GCCTCCCATTTAGGCAAGCAAATTGCCTACACGGGTGTGACGCAGGCACT
GCGGACCATTGTCAGGGAGGAAGGAGTGCTGGGGCTGTACAAAG
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Synonyms
Publications