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Properties
| Property Name | Value |
|---|
| Product | calcium-dependent protein |
| Orig transcript id | gnl|cribi|Naga_100019g49.505.mrna |
| Orig protein id | gnl|cribi|Naga_100019g49.505 |
| Gene | CDPK1 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037252.1 | supercontig | KK037252.1:134746..137705 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9221 ID=rna9221|Name=rna9221|organism=Nannochloropsis gaditana|type=mRNA|length=1667bp
CCAGCCGTTGGCCCATATTATTCTCTCTCGCTCATGATTCATGCACATTT
TTGTATGTCTTTTTGCACAGATTTAACAGAGTATACAATGAAGTTCTGCT
CACATGTGCTCATTATGGCACTGGCCATCGCATTTCTTGTGCATAAGACG
ACCGAAGCTGTTGGTAATAACGGGGCACGTTCGCGGCTAGTCTCCAAGCT
GAAGCGCGAGGTCGCAGCGAAAGAATTTAGCTCGGCCAAGTACCACAACG
CAGTACTCAACAAAATTGAGCATAAGGGAAATAAAGAGTGGTCTGCTGTT
GGAGGCAAAGAAGCGATCTCTCCTGAAAGTAAATCGGACCTTGTAGGAGA
AGAAATGCGTTTCCTAGAGGAAGCGGAGGAAGAGGTTGAGGAAAACGATG
AGGAGGAAGATGAGGACGATGATTGGGACGACGATGAATTTGAAGATGAT
GATGATTCAGAGGTGGAGGAGAAGGATGCCTCACCCATCAAAAATCAGCC
TGCTTTACAGGGCGAAGTTCTCATCGTAGAGGGGTCCGACAAGGATGACT
TGGCGGCAGCGTTAAAACAAGTCGGTGCCACGAATGAGGACATTGAAGAA
ATCCTTGAAGAGGAGGCGGCGTTTGAAAAACTGGAAAACGAAATTGAGCA
TGCGATGGACGCCGACTCAGGAACGCCAAATGAGGCCGAAGCTGAAGAAG
CAGGATGGAAGACAGGAACAGATAAAGCTGCAAAAGCAATGACGCAAAAA
GAAAGTGACGCCAACAAAGGAAAAGTAGCCGCCGACGTCGACAATCTGGA
GGAGGGAGATACGATGAAAATGGATGAGGAAAGTAGGGGAGTGGACGAAA
GTGACGAAGATAAGGAACAGGATGAGGATGAACACGACGAAGACGAGGAC
GGGGATGACGACGAAGACGAAGATGATGAAGACGAGGACCAGGACCAGGA
CGGCGAAGAAGTCGAGAACGAAAATGAGATTGAGGACGAGGATAAAGAGG
GGGAACATAAAAATGGACTAGACAATACCGTGGAAGCAGAAGGGATTATT
AATGATAGAAAAGAGGACAAAAAGGGCGTAAGTGAGTTCAAGGACGGGCA
AGCTTCAATGGCAACGGACAAAAGTAGTACAATTGCTGGTCGCCTCGTGG
ATCAATCTTATACACAACAGGATTCGGCATCGACATCGACGCTAGCAGCT
TCGGGCGAAACGAAGTTAGATAAAACGCATGGTGCAGGTAGAAACAACTT
TTGGATCGTATCAGGAATTGGTGGTGTAGTACTAGTGGCAGCCTTACTGA
TCTCGAGAAATCGACGTCGATTCTCAAATGGTAATAATATGCTTAATACT
ACGGCTTTTGGGAGCAATGTTAACCACGATCCTTTCGGAATGGATGCGAA
TTCCTCAGTCACCCAGCACTATGATCAATATAGGCGAGTAACAACCCATG
ATTCTAGAGCTGCATAAGTACACCGTGAAAATGGATTTCGTATGATCTTA
TATCATTTGCAAAAGTTATTATCAGATTACGGAAAGAGAAGATCTGAAAC
TCGCTTTGGAACACTTTTAAGTTCGGAATTCAAAAAAAATTTGGAGGGTT
TCGGGGGTGGGACCAAAAATTTGCATCATCACGTCGTGCTAAAGAATAGA
TTACGAAATTTTATAGT back to topprotein sequence of rna9221 >rna9221-protein ID=rna9221-protein|Name=rna9221|organism=Nannochloropsis gaditana|type=polypeptide|length=519bp
MVRVVRHLTTGNTYAMKTLHLNRLKSKASLADLRNEVRIMSELDHPNIVQ
LYETFETDDHIFLIMELCTGGELLDKLHRQEGHHYSEQIASQLVKKMVGA
IRYCHDHHIAHRDLKLENFLFENEGADAELKLIDFGLSRHYRDDQRMHRP
VGTPYYVDPSVLEGSYTQECDMWSIGVIAYMLLSGRPPFYGDTDNETLIR
VRAGKFSFPPSAFHQVSAQAKDFISRLLVVDHTRRMTARQAQAHPWLHSW
DQSPEPLHVDILGSLRNFHEFSTLKKVAMEVVAFSLRSEQIKDLRREFEK
VDLDSNGEITLEELSQALEASGLLSPGDLETLVQGLDVAHQHAGTISWHE
FLAATMDAALLDEEHIQLAFQRIDSDRTGYISQSNFGELVGADMTIEQVQ
EVFAEVDTDGDGKISYEEFVSLMKGTPPAPTNTMASGHALVDKAFSKRNL
RHQRHRSIHAASESSITTSHSNSGSSNTLSVSSPGCRHRRLHRLRHSIQH
LVDVATNSPTRQAHAASHP back to topmRNA from alignment at KK037252.1:134746..137705+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9221 ID=rna9221|Name=rna9221|organism=Nannochloropsis gaditana|type=mRNA|length=2960bp|location=Sequence derived from alignment at KK037252.1:134746..137705+ (Nannochloropsis gaditana)
TATCGCCCACTGATTGCGGGTTGcgtctccgtctccctccttcgcctccg
gggaaggaaaggctcaTTATTTCGTACAGAAGATTCTATCGTAGTCGATT
TCTGTGCTGTTCCATGGAAAATAAATACTCCACGTTTCCTGATCGCTCAA
ATTCTTATCATCGAAGCAAGCTGTTAGCCAGCTTGTCGCGACCCGTTGAG
GAGTGCTTCACAGTTGATCATGTGCTCTTTTGACATTGTGCGCATATGCA
GGGACAGCATTCAAACGAGGGAAAAATTACCTGCACGAATCGGAAATATC
GGTGGCTGAGGGCATGGGGTGCCTTTATTCAAGCCCTGCCGGCGTACCTC
ACACCTATCGCGAATCAGACATGGAAAAATCAGCGCACGTTCGGAGGAAA
ACGCAACACTTAATCCAAAATCTGGTGCACGAGGAGTACAGACTGAAAGT
TGACGAGGTAAATTAGGACTAAATTTGTACTGTGAACGTACTACTGGGCG
AGATATGTGATATTCCCGGCGGTGGAAATATTCGTCTACCGCACGTAGCT
TCTGCGTGTTTACCATCCCTTCGACCTTTTCAAGCCTGCAATGTATAAGC
ACGAGATTTCATTTTCAATAACCTCAATTGATTCAATTTCTTGCGACTTT
TTCATGCGTCAAAGACGGGAAATCAAATAAGGGTCTCCTGTGGGATGATG
CTTTTCTAAGCAAGACAGATACTTCTTCGAATTGTACCGTTTTCCGAAAA
TTTCCCAGTTAACTCTGTAAAATCAACACGACTCAACGATTACAGGTCTA
TGATGTTGGTAAAGGCAAAATTTTGGGGACAGGGATCAGCGGAATGGTCC
GGGTTGTGCGGCACCTGACAACTGGCAACACTTACGCCATGAAGACGCTG
CACTTGAATCGGCTGAAATCCAAGGCCTCTTTGGCAGACCTGCGGAACGA
AGTTCGCATTATGAGCGAGCTCGATCATCCAAATATCGTGCAGCTCTACG
AGACCTTTGAGACGGATGACCATATTTTTCTCATTATGGAGCTCTGCACA
GGGGGCGAGCTTCTAGACAAATTGCACCGACAGGAGGGTCATCATTATTC
GGAACAGATTGCCTCTCAGCTCGTTAAGAAGATGGTGGGTGCAATCCGCT
ACTGCCACGATCATCACATTGCTCACAGAGACTTAAAACTCGAGAATTTT
TTATTCGAAAACGAGGGTGCAGATGCCGAGCTCAAGCTCATTGATTTTGG
CCTATCGCGTCACTATCGGTAAGCCATCATTATATTCCTGCGGTGAAGAC
AGTAAAAGGCAGTGTCCACTTTCCTGGTGGCACTACCAACAGTTCTCGAA
TTTGCATTGACTTCGCAGGAAGATGTTCGCTAGGATGTCACACGCTAGTC
GTGTCGAAGTAATTGTTCACTCACTCGCATTTCCTCTTATTGCTCTTCAG
CGACGACCAGCGCATGCATCGGCCTGTGGGCACGCCTTACTACGTGGACC
CCTCCGTGCTGGAGGGATCATACACGCAGGAGTGCGACATGTGGTCTATC
GGCGTCATCGCGTACATGCTCTTGAGCGGCCGTCCGCCGTTCTACGGTGA
CACAGATAATGAAACCTTGATACGCGTGCGAGCAGGCAAATTTAGCTTTC
CACCGTCTGCTTTCCATCAGGTGTCAGCGCAGGCCAAAGACTTCATATCG
AGACTGCTCGTTGTGGATCACACGCGACGCATGACGGCGCGGCAGGCACA
GGCACACCCATGGCTGCATTCGTGGGACCAATCGCCTGAGCCTTTGCATG
TTGATATTCTGGGTTCCCTCCGCAACTTCCACGAATTTAGCACGCTCAAG
AAGGTGGCTATGGAGGTGGTAGCTTTCAGCCTACGGTCCGAGCAGATCAA
GGATCTGCGCCGAGAGTTCGAGAAGGTGGACCTTGATAGCAACGGAGAGA
TCACCCTAGAGGAGCTGTCACAAGCACTTGAAGCGTCAGGCCTCCTCAGT
CCTGGTGACTTGGAGACCCTGGTGCAGGGGTTAGACGTCGCGCATCAGCA
CGCGGGCACAATATCTTGGCACGAGTTCTTGGCGGCTACGATGGATGCTG
CGCTCCTGGATGAGGAGCATATCCAGCTTGCTTTTCAGCGCATTGACTCA
GATCGCACGGGTTACATATCCCAAAGCAACTTTGGCGAGCTTGTGGGCGC
AGACATGACAATCGAGCAAGTGCAGGAAGTCTTCGCCGAGGTTGACACGG
ACGGAGACGGCAAGATAAGCTATGAGGAGTTTGTTTCCCTTATGAAGGGT
ACACCGCCCGCGCCTACAAACACGATGGCCTCTGGCCATGCTTTGGTGGA
CAAGGCCTTTAGCAAAAGAAACTTGCGGCACCAACGCCACCGATCGATCC
ACGCCGCTTCCGAGTCATCCATCACGACTTCACATTCAAATTCGGGCTCA
TCCAACACTCTATCCGTCTCCTCGCCTGGCTGTCGTCACAGACGCCTCCA
CAGACTTCGGCATTCTATCCAGCACTTGGTAGATGTAGCAACAAACTCTC
CCACCCGGCAGGCTCACGCAGCCTCCCATCCTTGATGAAAAACACAACAC
GTATGGCATTCGGGGAAATGTGAACAAAGGAATCCCAGTGCCGCTTCGAT
ATACTTACAAGTTTTGTCAGTACACGTACGTTTCACACGAATAAAGTAGC
AAGTAGTGTGATATCTCCGAGTGACTGAATAATAAAGAATGAAATATgta
atatatatatatatatatgaaATTGTAAAAAAAATCATGATGATCGGAGT
AGCATGGAGGGGGATACATTTTTTCTCTTAGCGATAAACCCATGAAAGAA
GATTAGACTCTAGGGGACATCTTGGATGCGAACCTGCCTCCTGCAAGCGT
CTGAATTTACCAATCACCAATTTGAAGCATGAAATGTAGGTGTTCATTCA
TTCTCtcgca back to topCoding sequence (CDS) from alignment at KK037252.1:134746..137705+ >rna9221 ID=rna9221|Name=rna9221|organism=Nannochloropsis gaditana|type=CDS|length=3120bp|location=Sequence derived from alignment at KK037252.1:134746..137705+ (Nannochloropsis gaditana)
ATGGTCCGGGTTGTGCGGCACCTGACAACTGGCAACACTTACGCCATGAA
GACGCTGCACTTGAATCGGCTGAAATCCAAGGCCTCTTTGGCAGACCTGC
GGAACGAAGTTCGCATTATGAGCGAGCTCGATCATCCAAATATCGTGCAG
CTCTACGAGACCTTTGAGACGGATGACCATATTTTTCTCATTATGGAGCT
CTGCACAGGGGGCGAGCTTCTAGACAAATTGCACCGACAGGAGGGTCATC
ATTATTCGGAACAGATTGCCTCTCAGCTCGTTAAGAAGATGGTGGGTGCA
ATCCGCTACTGCCACGATCATCACATTGCTCACAGAGACTTAAAACTCGA
GAATTTTTTATTCGAAAACGAGGGTGCAGATGCCGAGCTCAAGCTCATTG
ATTTTGGCCTATCGCGTCACTATCGCGACGACCAGCGCATGCATCGGCCT
GTGGGCACGCCTTACTACGTGGACCCCTCCGTGCTGGAGGGATCATACAC
GCAGGAGTGCGACATGTGGTCTATCGGCGTCATCGCGTACATGCTCTTGA
GCGGCCGTCCGCCGTTCTACGGTGACACAGATAATGAAACCTTGATACGC
GTGCGAGCAGGCAAATTTAGCTTTCCACCGTCTGCTTTCCATCAGGTGTC
AGCGCAGGCCAAAGACTTCATATCGAGACTGCTCGTTGTGGATCACACGC
GACGCATGACGGCGCGGCAGGCACAGGCACACCCATGGCTGCATTCGTGG
GACCAATCGCCTGAGCCTTTGCATGTTGATATTCTGGGTTCCCTCCGCAA
CTTCCACGAATTTAGCACGCTCAAGAAGGTGGCTATGGAGGTGGTAGCTT
TCAGCCTACGGTCCGAGCAGATCAAGGATCTGCGCCGAGAGTTCGAGAAG
GTGGACCTTGATAGCAACGGAGAGATCACCCTAGAGGAGCTGTCACAAGC
ACTTGAAGCGTCAGGCCTCCTCAGTCCTGGTGACTTGGAGACCCTGGTGC
AGGGGTTAGACGTCGCGCATCAGCACGCGGGCACAATATCTTGGCACGAG
TTCTTGGCGGCTACGATGGATGCTGCGCTCCTGGATGAGGAGCATATCCA
GCTTGCTTTTCAGCGCATTGACTCAGATCGCACGGGTTACATATCCCAAA
GCAACTTTGGCGAGCTTGTGGGCGCAGACATGACAATCGAGCAAGTGCAG
GAAGTCTTCGCCGAGGTTGACACGGACGGAGACGGCAAGATAAGCTATGA
GGAGTTTGTTTCCCTTATGAAGGGTACACCGCCCGCGCCTACAAACACGA
TGGCCTCTGGCCATGCTTTGGTGGACAAGGCCTTTAGCAAAAGAAACTTG
CGGCACCAACGCCACCGATCGATCCACGCCGCTTCCGAGTCATCCATCAC
GACTTCACATTCAAATTCGGGCTCATCCAACACTCTATCCGTCTCCTCGC
CTGGCTGTCGTCACAGACGCCTCCACAGACTTCGGCATTCTATCCAGCAC
TTGGTAGATGTAGCAACAAACTCTCCCACCCGGCAGGCTCACGCAGCCTC
CCATCCTTGAATGGTCCGGGTTGTGCGGCACCTGACAACTGGCAACACTT
ACGCCATGAAGACGCTGCACTTGAATCGGCTGAAATCCAAGGCCTCTTTG
GCAGACCTGCGGAACGAAGTTCGCATTATGAGCGAGCTCGATCATCCAAA
TATCGTGCAGCTCTACGAGACCTTTGAGACGGATGACCATATTTTTCTCA
TTATGGAGCTCTGCACAGGGGGCGAGCTTCTAGACAAATTGCACCGACAG
GAGGGTCATCATTATTCGGAACAGATTGCCTCTCAGCTCGTTAAGAAGAT
GGTGGGTGCAATCCGCTACTGCCACGATCATCACATTGCTCACAGAGACT
TAAAACTCGAGAATTTTTTATTCGAAAACGAGGGTGCAGATGCCGAGCTC
AAGCTCATTGATTTTGGCCTATCGCGTCACTATCGCGACGACCAGCGCAT
GCATCGGCCTGTGGGCACGCCTTACTACGTGGACCCCTCCGTGCTGGAGG
GATCATACACGCAGGAGTGCGACATGTGGTCTATCGGCGTCATCGCGTAC
ATGCTCTTGAGCGGCCGTCCGCCGTTCTACGGTGACACAGATAATGAAAC
CTTGATACGCGTGCGAGCAGGCAAATTTAGCTTTCCACCGTCTGCTTTCC
ATCAGGTGTCAGCGCAGGCCAAAGACTTCATATCGAGACTGCTCGTTGTG
GATCACACGCGACGCATGACGGCGCGGCAGGCACAGGCACACCCATGGCT
GCATTCGTGGGACCAATCGCCTGAGCCTTTGCATGTTGATATTCTGGGTT
CCCTCCGCAACTTCCACGAATTTAGCACGCTCAAGAAGGTGGCTATGGAG
GTGGTAGCTTTCAGCCTACGGTCCGAGCAGATCAAGGATCTGCGCCGAGA
GTTCGAGAAGGTGGACCTTGATAGCAACGGAGAGATCACCCTAGAGGAGC
TGTCACAAGCACTTGAAGCGTCAGGCCTCCTCAGTCCTGGTGACTTGGAG
ACCCTGGTGCAGGGGTTAGACGTCGCGCATCAGCACGCGGGCACAATATC
TTGGCACGAGTTCTTGGCGGCTACGATGGATGCTGCGCTCCTGGATGAGG
AGCATATCCAGCTTGCTTTTCAGCGCATTGACTCAGATCGCACGGGTTAC
ATATCCCAAAGCAACTTTGGCGAGCTTGTGGGCGCAGACATGACAATCGA
GCAAGTGCAGGAAGTCTTCGCCGAGGTTGACACGGACGGAGACGGCAAGA
TAAGCTATGAGGAGTTTGTTTCCCTTATGAAGGGTACACCGCCCGCGCCT
ACAAACACGATGGCCTCTGGCCATGCTTTGGTGGACAAGGCCTTTAGCAA
AAGAAACTTGCGGCACCAACGCCACCGATCGATCCACGCCGCTTCCGAGT
CATCCATCACGACTTCACATTCAAATTCGGGCTCATCCAACACTCTATCC
GTCTCCTCGCCTGGCTGTCGTCACAGACGCCTCCACAGACTTCGGCATTC
TATCCAGCACTTGGTAGATGTAGCAACAAACTCTCCCACCCGGCAGGCTC
ACGCAGCCTCCCATCCTTGA back to top
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