rna9219, rna9219 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9219
Unique Name	rna9219
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1405
Alignment location	KK037252.1:130163..132595 +

Link to JBrowse

Properties


Property Name	Value
Product	Phosphoribosyltransferase
Orig transcript id	gnl\|cribi\|Naga_100019g51.530.mrna
Orig protein id	gnl\|cribi\|Naga_100019g51.530
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:130163..132595 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100019g51	gene8943	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9219	rna9219-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21508.1	cds9189	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:130163..132595+
coding sequence from alignment at KK037252.1:130163..132595+

mRNA sequence

>rna9219 ID=rna9219|Name=rna9219|organism=Nannochloropsis gaditana|type=mRNA|length=1405bp
CGTTCCTAGTTTCAGGCTTAACGAGTCCTCGTTGAAGTCCAGGAGCGGCC
CCCAGCGAGTTCAACGGGCAGCAATGCACCTCGGAGGCAAGTTCAATTTT
ATAACCTTGTCGTGTGATGTGTGACTCCCAACCTGTTGCCATCCCTAACG
TACCAAACGTGCTTCTTTATTTTCAAGGCACGGTGAACCTGTTCGGCACG
TGGCTTCTCTTGGCCATACTAACCCCTTTTGAGCCGGAGGGGCAATATCC
TCAGCCAAGGAACCCTCTGCTAAAAGCTTCCTCACCTCTCCCTTCTCTGC
ACTGTTTGATCCGACAGAAAACTAGCCCTTACAAAAACGAACTATGCCTT
CTCTTGTGACAAGGAATCTCATCCTCTCGCTTGTGCTGCTGTCGTCATGC
TCAGCATTTTTGATGCCCAATGCTCCGAAACCAACGAGGTCTGTTCTTCA
GGTTGGAGAAGGCAGCACTCATGTGAAAGAACTTGTGGCGCTTAATCCAG
AAGACTATGTTGCAATAGGGTTGGCGATGTGCTACAAAATTAATGATGGT
GGAAAGCTGGATGAGGTTCTTGTGATGGAGCCCCTGACTGCCGGGACATT
GGAGTGCCTGGCGCTTGGCGTGCCCACATCCTACAAACGTGTGATGGGAT
TGACCTGCGGAGAGCTCTTCAATGGCGAGGACCTGCGAAACCCCTCCGAC
GTCAATATTGAGGCATTGCGGCCTTTGGCGAAGGGCGAGACGGTGTCGGA
ATGTGAAGATATGTTAATCCGCTCGATGGCGGCCGCACGCACCTTCAAGA
GGCGTGTTGAAGCGCAAATTATCCCCCTGGGCGAAGTGGCTGATGATTTT
AACTTTAATACAGAGAAGAAGCGGGTTTTAAACCAGGTCTTTGAGCCCTC
CTTCGCCGACAACGTCAAGCAGGACAAAAGCATCGACGTGTATGGTCGGG
CGGATGAGGACTTCAACGATGAGGTTGACAAACTCGCCAATGCTTAAGTC
TGCTCTTAAAATGCCTCGAAGGGGTCTATGCCCGTTCCATCTAGTGAAGA
GTGGCAATCGAAGAATCGTGTGTGTGCAAAAAGTGCTGTTCAACGATGAA
GAGAGAAAAATCTTTTTTATTGCTAGAGAAATAAAAACAAAGGGGCACGC
TGGTATGGGGTTGGGCTTCGTTTCGCAAACTTTTATCTTGAACACTGGTT
GGTGGGGCGGCGTATCGATCTTTCCTGTTTACTACCTCCTCAGTCGCCAT
GGACGCGCCAATAATTGGGACGCGGCTTGGAGACAAATGATAGGTAGATA
AGGGACATGCGAAGACGCTCTCGTCCATTCTTTTCTCCTTCCCAAGCCCT
CGAGTTTACGGGGTGATGGCAGTCTTTTCCTCTCCAAACTTCTTCGTTGT
GTCCC

protein sequence of rna9219

>rna9219-protein ID=rna9219-protein|Name=rna9219|organism=Nannochloropsis gaditana|type=polypeptide|length=435bp
MSRSFLCKTARKTIVIVGHALLRIPPPWKSTLAILALCIVNLQSTVAFVP
PLVGAVFTQSEDLLPAAPLKDSNKIASAFFGSLGSFTRIHSKYFPCGTKP
NIRIAARSSVPSNEMMEGNLQERRYQIIAAPVCEPMARRLQIQYPERFRF
HPTYWGKFPDGTDNIEVGGFQPHNVMAGEHVLFLASFHNNDVTLSQFQVM
VMLLQSFIESLTIVLPFYPVGTMERVSKEGQVATANTYAQMFSNLPSCGR
PTRLLIYDLHTLQNRFYLHGNSIASLQTTIPILFDEIRQEKIDCVAFPDD
GAAKRFAHMFAPLTLELVTCGKTRDGDKRAITVQDGNPKNKRVLIVDDLV
QTGGTLYECGVALKALGAASVSAFVAHSVFPNESWKRFSRGGDRSVFEKF
WTTNSIPTVTNNLPKEDVFVVLDLLEKIVYDLDFR

mRNA from alignment at KK037252.1:130163..132595+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9219 ID=rna9219|Name=rna9219|organism=Nannochloropsis gaditana|type=mRNA|length=2433bp|location=Sequence derived from alignment at KK037252.1:130163..132595+ (Nannochloropsis gaditana)
TACTGCATCTGTATAAAAATATGATCATATAATCCACTGGCATCATGCTA
ACATTTTGTGAACTTAATTTGCGCATGCACAGCCGATAAATGTCACGATC
TTTCCTGTGCAAGACAGCAAGGAAAACAATAGTGATCGTGGGTCATGCTT
TACTGAGAATACCTCCGCCGTGGAAGTCTACTCTTGCAATTCTAGTAAGT
TATGCTTGTAAGTGACTAGCCCTGCGCATAATCCGAATATATACGTTGTA
ATTGGAAACTACTCAGTTTGAGCATGTTGTAGACTGTTCTAATTCCATTG
TAACTTTGAGGGGGAAGTAGTATCATTCTCCTTTACGATTGATTAAATCG
ATACGAATCTAACAAGGATTGGTGTTTAATCTGTTACCATGCATAGGCCC
TGTGCATCGTCAATTTACAGAGCACGGTAGCCTTTGTACCACCCCTGGTG
GGGGCAGTTTTCACTCAAAGTGAAGACCTTCTGCCGGCAGCACCGCTGAA
AGACAGCAACAAGATCGCGAGCGCTTTTTTTGGAAGTCTAGGTTCCTTCA
CTAGAATACATTCCAAGTATTTCCCTTGTGGAACCAAGCCAAATATCAGA
ATTGCAGCGCGCAGTAGTGTGCCCTCCAACGAAATGATGGAGGGAAACTT
ACAAGAAAGACGTTATCAAATTATTGCGGCACCTGTATGCGAGCCTATGG
CTCGTCGCCTTCAAATACAGTATCCGGAGCGCTTTCGTTTTCATCCTACC
TATTGGGGGAAGTTTCCGGATGGCACTGACAACATAGAAGTCGGTGGCTT
CCAACCACACAATGTCATGGCAGGGGAACACGTGTTATTTCTGGCATCGT
TCCACAACAACGACGTTACTCTCTCCCAATTTCAAGTTATGGTTATGCTT
CTACAAAGCTTTATCGAGAGTCTCACAATTGTGCTTCCATTTTATCCTGT
CGGTACGATGGAACGAGTGAGTAAAGAAGGCCAGGTTGCCACGGCTAATA
CGTATGCGCAGATGTTCTCAAATCTGCCATCATGTGGTCGTCCAACTCGA
CTTCTCATCTACGACTTACACACGCTCCAAAACCGCTTCTACCTTCACGG
TAATTCTATCGCTAGTCTACAAACCACCATTCCTATCCTATTCGATGAAA
TTCGACAGGAAAAAATTGATTGTGTTGCCTTTCCAGATGACGGAGCTGCA
AAACGTTTTGCTCACATGTTTGCTCCATTAACCCTTGAACTGGTTACATG
TGGAAAGACTCGAGACGGTGATAAGCGCGCCATCACGGTTCAAGATGGGA
ACCCGAAAAATAAAAGGGTGTTAATTGTGGATGACCTCGTACAAACGGGG
GGGACTCTTTACGAGTGTGGTGTAGCATTGAAAGCCCTAGGTGCTGCTTC
TGTGTCAGCTTTCGTGGCCCACTCTGTTTTCCCAAATGAGTCCTGGAAGC
GCTTTTCGCGTGGTGGGGACCGCAGCGTATTTGAAAAATTTTGGACTACC
AACTCGATACCAACTGTAACAAACAACCTTCCAAAGGAGGATGTGTTTGT
TGTTTTAGATCTGTTGGAGAAAATTGTTTATGACCTAGATTTTCGGTAAA
AAAATTAAAAAGGTGTTAATAGACCTTTACTAGTCGTTCATTTCATGGAA
AATCTTCCGAAGTCTGAGAAGGAAACGTACTCGGGCAAAACAAAATGAAA
GAGAATGAAAGTGTAACTATGCACTAATGCAAGAAAGGAATTGTCATATA
GGGTCTTCATAGCGGGCATAAATTGACGGTCCCTTGAAAATGTTTCAGAT
AGGGTTATCTTCATATGCATGGTATGAAGTCGAGGATTGCGTTATAATTT
CCTGACAGACATGTGATGCTTTTGTAAGAACGTACGCAACCCGCATTTTG
AAGAGCACGCGACTCCATCTACACATCGACTTGGCCGATAACAGTCGAAA
TTCGATTGCTCATATGTGATTAAGATATTTGACCATCCAGGTTGGCTGAA
AGCAATGGATTAGAGCGGAAATATGTACTTTTCCTATCATAATTTAACTG
ATTTTTGTTATATGATGATACTCAAGGGTATCAGAGGCCTTTCTATTATT
CCGAGTTGCATAATCATAGATAAAAGCTTCGCTAGACTAGCTACCACACG
ATGTTGCATCGTGCGGAGCAGAGACACTTTAGAGGTACAATCCATCAATT
CTTGCCGCTTTTCATTGGCGTGGAATACTCCAAATTATACGCAGAGCTCA
AAAGACGTCATCGATATTTTAATTTTACGCTCCACTTTTCTCGACTGCGT
ACAACCATCAAGATTCAGTTACTGATTTTAtcacatttttcttttcttcc
tttgaTAAGTTGTcatttctccccttcttcgcgaAAAGCAGAGTGAACCG
TCTCTTGTTAATGAACGGTCTTTGCCTCATTCA

Coding sequence (CDS) from alignment at KK037252.1:130163..132595+

>rna9219 ID=rna9219|Name=rna9219|organism=Nannochloropsis gaditana|type=CDS|length=2616bp|location=Sequence derived from alignment at KK037252.1:130163..132595+ (Nannochloropsis gaditana)
ATGTCACGATCTTTCCTGTGCAAGACAGCAAGGAAAACAATAGTGATCGT
GGGTCATGCTTTACTGAGAATACCTCCGCCGTGGAAGTCTACTCTTGCAA
TTCTAGCCCTGTGCATCGTCAATTTACAGAGCACGGTAGCCTTTGTACCA
CCCCTGGTGGGGGCAGTTTTCACTCAAAGTGAAGACCTTCTGCCGGCAGC
ACCGCTGAAAGACAGCAACAAGATCGCGAGCGCTTTTTTTGGAAGTCTAG
GTTCCTTCACTAGAATACATTCCAAGTATTTCCCTTGTGGAACCAAGCCA
AATATCAGAATTGCAGCGCGCAGTAGTGTGCCCTCCAACGAAATGATGGA
GGGAAACTTACAAGAAAGACGTTATCAAATTATTGCGGCACCTGTATGCG
AGCCTATGGCTCGTCGCCTTCAAATACAGTATCCGGAGCGCTTTCGTTTT
CATCCTACCTATTGGGGGAAGTTTCCGGATGGCACTGACAACATAGAAGT
CGGTGGCTTCCAACCACACAATGTCATGGCAGGGGAACACGTGTTATTTC
TGGCATCGTTCCACAACAACGACGTTACTCTCTCCCAATTTCAAGTTATG
GTTATGCTTCTACAAAGCTTTATCGAGAGTCTCACAATTGTGCTTCCATT
TTATCCTGTCGGTACGATGGAACGAGTGAGTAAAGAAGGCCAGGTTGCCA
CGGCTAATACGTATGCGCAGATGTTCTCAAATCTGCCATCATGTGGTCGT
CCAACTCGACTTCTCATCTACGACTTACACACGCTCCAAAACCGCTTCTA
CCTTCACGGTAATTCTATCGCTAGTCTACAAACCACCATTCCTATCCTAT
TCGATGAAATTCGACAGGAAAAAATTGATTGTGTTGCCTTTCCAGATGAC
GGAGCTGCAAAACGTTTTGCTCACATGTTTGCTCCATTAACCCTTGAACT
GGTTACATGTGGAAAGACTCGAGACGGTGATAAGCGCGCCATCACGGTTC
AAGATGGGAACCCGAAAAATAAAAGGGTGTTAATTGTGGATGACCTCGTA
CAAACGGGGGGGACTCTTTACGAGTGTGGTGTAGCATTGAAAGCCCTAGG
TGCTGCTTCTGTGTCAGCTTTCGTGGCCCACTCTGTTTTCCCAAATGAGT
CCTGGAAGCGCTTTTCGCGTGGTGGGGACCGCAGCGTATTTGAAAAATTT
TGGACTACCAACTCGATACCAACTGTAACAAACAACCTTCCAAAGGAGGA
TGTGTTTGTTGTTTTAGATCTGTTGGAGAAAATTGTTTATGACCTAGATT
TTCGGTAAATGTCACGATCTTTCCTGTGCAAGACAGCAAGGAAAACAATA
GTGATCGTGGGTCATGCTTTACTGAGAATACCTCCGCCGTGGAAGTCTAC
TCTTGCAATTCTAGCCCTGTGCATCGTCAATTTACAGAGCACGGTAGCCT
TTGTACCACCCCTGGTGGGGGCAGTTTTCACTCAAAGTGAAGACCTTCTG
CCGGCAGCACCGCTGAAAGACAGCAACAAGATCGCGAGCGCTTTTTTTGG
AAGTCTAGGTTCCTTCACTAGAATACATTCCAAGTATTTCCCTTGTGGAA
CCAAGCCAAATATCAGAATTGCAGCGCGCAGTAGTGTGCCCTCCAACGAA
ATGATGGAGGGAAACTTACAAGAAAGACGTTATCAAATTATTGCGGCACC
TGTATGCGAGCCTATGGCTCGTCGCCTTCAAATACAGTATCCGGAGCGCT
TTCGTTTTCATCCTACCTATTGGGGGAAGTTTCCGGATGGCACTGACAAC
ATAGAAGTCGGTGGCTTCCAACCACACAATGTCATGGCAGGGGAACACGT
GTTATTTCTGGCATCGTTCCACAACAACGACGTTACTCTCTCCCAATTTC
AAGTTATGGTTATGCTTCTACAAAGCTTTATCGAGAGTCTCACAATTGTG
CTTCCATTTTATCCTGTCGGTACGATGGAACGAGTGAGTAAAGAAGGCCA
GGTTGCCACGGCTAATACGTATGCGCAGATGTTCTCAAATCTGCCATCAT
GTGGTCGTCCAACTCGACTTCTCATCTACGACTTACACACGCTCCAAAAC
CGCTTCTACCTTCACGGTAATTCTATCGCTAGTCTACAAACCACCATTCC
TATCCTATTCGATGAAATTCGACAGGAAAAAATTGATTGTGTTGCCTTTC
CAGATGACGGAGCTGCAAAACGTTTTGCTCACATGTTTGCTCCATTAACC
CTTGAACTGGTTACATGTGGAAAGACTCGAGACGGTGATAAGCGCGCCAT
CACGGTTCAAGATGGGAACCCGAAAAATAAAAGGGTGTTAATTGTGGATG
ACCTCGTACAAACGGGGGGGACTCTTTACGAGTGTGGTGTAGCATTGAAA
GCCCTAGGTGCTGCTTCTGTGTCAGCTTTCGTGGCCCACTCTGTTTTCCC
AAATGAGTCCTGGAAGCGCTTTTCGCGTGGTGGGGACCGCAGCGTATTTG
AAAAATTTTGGACTACCAACTCGATACCAACTGTAACAAACAACCTTCCA
AAGGAGGATGTGTTTGTTGTTTTAGATCTGTTGGAGAAAATTGTTTATGA
CCTAGATTTTCGGTAA

Synonyms

Publications