rna9211, rna9211 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9211
Unique Name	rna9211
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	903
Alignment location	KK037252.1:112803..115400 +

Link to JBrowse

Properties


Property Name	Value
Product	hypersensitive-induced response protein
Orig transcript id	gnl\|cribi\|Naga_100019g59.518.mrna
Orig protein id	gnl\|cribi\|Naga_100019g59.518
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:112803..115400 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100019g59	gene8935	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9211	rna9211-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21496.1	cds9181	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:112803..115400+
coding sequence from alignment at KK037252.1:112803..115400+

mRNA sequence

>rna9211 ID=rna9211|Name=rna9211|organism=Nannochloropsis gaditana|type=mRNA|length=903bp
ATGCTTGAGAAACTCTGGGATGTTTTACAAGCAGCCGAGCCCTTTGGAAA
CGAAACTTTGGTCGTCATGATCTGGACGGTTTGTGTTTGCTCTCTACGCA
TCATACTCTTCCTTTTAAAGATTCAAGAATGGGTGCCGAATTCCTTGATT
TTCGCGAATCCTTACTTTGTAAACCGCTTCGTCGCCGCCTTCTCCATCAA
GTCTGCAGCCAGGAATGGAGGTAACGGTCATTGTCATGCCGCGTCAAACA
CTGCTCCCGACGGCTTGTGCACATCCTCTTCCGCTCCTTCCTCCGTCTCT
CGCGCCTCCTCTTCGGCCTGCCGCGGAGTGGTACCTAACATGCCCATTCG
CATTGCGGAAAGCTTACTGGGGCGCACGCCATCAGTGCTAGTGCTGGTGC
CTGCGCACCTCTTGGGAGGCATCATGGGCGTGACCCTCGTGAAACTTACG
ATGGGATGGAGTCCGCTCTCCTGCGGCTCTGCCGCTCAGGCTTTACTGCC
CGTTATGTACGGAACGAGCGTTGATAAAGCGAATGCATCAATGCTTATGG
GCTGGTGGGTGTTTGTTGAGGAGATCTTGGTGACATTCTTATTCGTCCTG
AGCTTTCTAGTGGTACCGGAGCTACTTCTTGTCAATCGACTCCCACGAAA
GTACGCTAACGCCTGTGCGCTGCCCTTACTGCTTGTCCGCTTGCCCGATC
AGACTCCAGCCTTTTCTCCGGCGGCGCTCTTTTCATTCTGGTTCACGAGC
AGAGACGCCTTGCACAAAACGTACGGTATCGCGTCAGTCCAGTACGAGCA
CGTCTTCGGTCCTATCCTGGGTGGCTTCTTGGCGGGCGTTGTCATGGCCA
CTTGCTTTCCTGACGATCAGACTCCTTTGCAACAGGAAGATATTGTATTA
TAG

protein sequence of rna9211

>rna9211-protein ID=rna9211-protein|Name=rna9211|organism=Nannochloropsis gaditana|type=polypeptide|length=283bp
MPFSCCCLQCIDTSTLGIQERFGNFVRILPPGMNLICWPIDNVVGRVSAR
VQQLVCDCGTKTKDNVFVAVQVIVQYQVIVSQAYDAYYKLTDPNLQIRSY
VEDIVRSTVPKMELDMAFEAKEELAHAIRDSLQQTMGTYGYTIIQSLVLD
IRVDEKVKTAMNEINASKRLREAAAEKAEADKIVQVKAAEASAESKYLNG
MGIARERKAIVDGLRGSVEEFSETVEGATPKDVMDLILLTQYFDMLKDVG
NNPTPTTLFMTHGPSAVTELKEQLRAGIMQNAA

mRNA from alignment at KK037252.1:112803..115400+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9211 ID=rna9211|Name=rna9211|organism=Nannochloropsis gaditana|type=mRNA|length=2598bp|location=Sequence derived from alignment at KK037252.1:112803..115400+ (Nannochloropsis gaditana)
GTTTCCAGCGGTGCACGCACGACGTCTCTAATACTCTTATTTTTATTTGG
TGAACACCACCTCGCATTCTCTTTCAACAGGGTATATTCTGCGTTAAACT
CGAAGGTTAAAACTTCTTGTCTACcatgcctttttcttgctgctGTCTGC
AGTGTATCGATACTTCTACTCTGGGCATACAGGAACGCTTTGGGAATTTT
GTGAGGTATGCAGGTGGCGATTCAAGTGGATGAGAGTGTTAAGCGCAGGA
CATGGCAGAAGGAGTACACGGAACGCGGACATAAGCACATCAGAATGTGT
CCGCCTGTATGCGGAACTAAACAAAAATAAAGTTTACTTGAATACAGTGT
CAATAAAATAAGCAGGCAGATTTTTATTGAAATAAAAAAAATGCTGCAAA
TGGCTTCTTCGATGTCTTGACTGTTAAGAAATGCTCCTGATCTATACCTT
ATAGTTAAGTCGTCGTCCTCACATACTTTTACAGGATTTTACCACCTGGA
ATGAATTTAATCTGCTGGCCTATTGATAACGTCGTTGGCCGCGTGAGCGC
CAGGGTGCAACAGCTCGTCTGCGACTGCGGAACTAAGACCAAAGATAACG
TTTTCGTGGCCGTGCAGGTCATCGTCCAGTATCAGGTCATCGTCTCTCAG
GCCTACGACGCCTACTACAAGTTGACGGACCCCAATCTTCAAATTCGCTC
GTATGTATTCTATACAGGTCGATTCTGCATGTGGTCTCCTTGCTTCTCTC
GCGATGGCTGCCAAttgccatcctcctctcagACAGTGTGCATGCGCACT
CGCGTCAGtgcgccctccaccccctcatCCCTCGTTTTTTTTTCACCCCT
CTGTCCTGTAGATATGTGGAGGACATCGTACGATCGACAGTGCCTAAGAT
GGAGCTCGACATGGCTTTCGAGGCAAAAGAGGAGCTCGCCCACGCGATCC
GGGACTCGTTGCAGCAGACCATGGGCACGTACGGCTACACCATCATCCag
tccctcgtcctcgacatCCGCGTGGACGAGAAGGTGAAGACAGCCATGAA
TGAGATCAACGCATCGAAGCGTttgcgggaggcggcggccgagaaggCTG
AGGCCGACAAAATCGTCCAAGTcaaggccgccgaggcctcTGCGGAGAGC
AAATACCTGAACGGAATGGGCATTGCGCGTGAAAGAAAGGCGATTGTCGA
CGGCTTGCGGGGCAGCGTGGAGGAGTTCTCGGAGACGGTAGAGGGGGCAA
CTCCCAAGGATGTTATGGATCTGATCCTACTCACCCAGTACTTCGACATG
CTCAAGGCAAGTGGttcgaaggaaggagaaaccCCTGCTACCGCTGAGAG
GTCACTTGTCTGGACCATGGAGGGTCGCTCGACCCGGCCTGTCACAGTTT
GAGGCGCCGCTTCTACCCAGCCATTCGTTCACATTCTCTTTCCGTCCTTA
TATCGCGTCACTCTCATCCATGACCCCACAGGACGTGGGCAACAACCCCA
CCCCGACGACGCTCTTCATGACTCACGGCCCGTCGGCGGTCACGGAACTA
AAGGAACAGCTTCGTGCGGGCATTATGCAGAACGCGGCATAAATCGCGAA
GATGGATTTAATGCAGCGATGCCTTCCGTCACGCATGCAGCATATCACAT
CAGAGGTAGCGCAATCAAGTGAAAGGCTCATCGCAGCCAGGTGCCCACGG
ACGACGTCCCTTGTGGATAGTTTGTCAATTTTCTTAATTTTCTACGTAAA
GAAGTATTCAAATATTATGATACGTacacccctcctcttcaccgcCTGAC
AATGCGCTTTACGGCCCCTTTATCTCCTGTACAAAAGGTGGCCGCCTTCC
AGCTTCCCCTCGGCGGTGCTGGGCATTTAGCCCTCCTTCAAGGGTGCTTG
CGGCAATCCGTGCGCACAGTAACTTTCCAACCCCCTTTCAAACTCCGATG
GAGTGCAAGAGAGGTTTTCGATTTAAAATGGCAAGTACCACGAGTACGAC
GAGCACAAGAACGTTTCCCACAGTGAGGGCCTGACAAATGCGGTCGCTGG
AAACTTGCCGCTTGAAGCGCTGTACTGCGTACTCCGCTCGCTCGAGCCCA
TCCCCAATCCTACCCGTTTCTTCTGCTAGAGTGTGAATCTGTTGGCCTTG
GGATTCCACTCCATCTCTAGCCTTGCCCGCTACGTCGAGTGTACGGTCCA
GCGTTTCAAGCTGCCGTGCATAGCTCTCCTTCATGCCGTCCTGCATCCGG
TCTATCTCTTTCTTGTACTCCCCTTCCGATGTGTCTTTATCCATATTGAT
CGCGTGCGAATAGTTTAATTTCAGTTCCGCTCGACGCACTTCGTCTTGGC
ACTCCCTGATTTGCCTCTCCACACCGCGTAACATGTCCTTTCCGGCAGTC
CGCTTCACTGGATCCTTCACAATTCGAACGGCCCGGTCACAGTTTTTGCT
CGCCTCTCTCACCTCATCCAGACGCCGCTGGCATGCGTCAAGGTGTTTGC
GTTTCTGTAATGTAGCTGTGGAGACACTCCCATGGCTTTCCTTAAGCTCC
TTTAAATGGTCCTGCAgctcccccacccgccgcTGCAGTTCTTCTTGC

Coding sequence (CDS) from alignment at KK037252.1:112803..115400+

>rna9211 ID=rna9211|Name=rna9211|organism=Nannochloropsis gaditana|type=CDS|length=3408bp|location=Sequence derived from alignment at KK037252.1:112803..115400+ (Nannochloropsis gaditana)
atgcctttttcttgctgctGTCTGCAGTGTATCGATACTTCTACTCTGGG
CATACAGGAACGCTTTGGGAATTTTGTGAGGATTTTACCACCTGGAATGA
ATTTAATCTGCTGGCCTATTGATAACGTCGTTGGCCGCGTGAGCGCCAGG
GTGCAACAGCTCGTCTGCGACTGCGGAACTAAGACCAAAGATAACGTTTT
CGTGGCCGTGCAGGTCATCGTCCAGTATCAGGTCATCGTCTCTCAGGCCT
ACGACGCCTACTACAAGTTGACGGACCCCAATCTTCAAATTCGCTCATAT
GTGGAGGACATCGTACGATCGACAGTGCCTAAGATGGAGCTCGACATGGC
TTTCGAGGCAAAAGAGGAGCTCGCCCACGCGATCCGGGACTCGTTGCAGC
AGACCATGGGCACGTACGGCTACACCATCATCCagtccctcgtcctcgac
atCCGCGTGGACGAGAAGGTGAAGACAGCCATGAATGAGATCAACGCATC
GAAGCGTttgcgggaggcggcggccgagaaggCTGAGGCCGACAAAATCG
TCCAAGTcaaggccgccgaggcctcTGCGGAGAGCAAATACCTGAACGGA
ATGGGCATTGCGCGTGAAAGAAAGGCGATTGTCGACGGCTTGCGGGGCAG
CGTGGAGGAGTTCTCGGAGACGGTAGAGGGGGCAACTCCCAAGGATGTTA
TGGATCTGATCCTACTCACCCAGTACTTCGACATGCTCAAGGACGTGGGC
AACAACCCCACCCCGACGACGCTCTTCATGACTCACGGCCCGTCGGCGGT
CACGGAACTAAAGGAACAGCTTCGTGCGGGCATTATGCAGAACGCGGCAT
AAatgcctttttcttgctgctGTCTGCAGTGTATCGATACTTCTACTCTG
GGCATACAGGAACGCTTTGGGAATTTTGTGAGGATTTTACCACCTGGAAT
GAATTTAATCTGCTGGCCTATTGATAACGTCGTTGGCCGCGTGAGCGCCA
GGGTGCAACAGCTCGTCTGCGACTGCGGAACTAAGACCAAAGATAACGTT
TTCGTGGCCGTGCAGGTCATCGTCCAGTATCAGGTCATCGTCTCTCAGGC
CTACGACGCCTACTACAAGTTGACGGACCCCAATCTTCAAATTCGCTCAT
ATGTGGAGGACATCGTACGATCGACAGTGCCTAAGATGGAGCTCGACATG
GCTTTCGAGGCAAAAGAGGAGCTCGCCCACGCGATCCGGGACTCGTTGCA
GCAGACCATGGGCACGTACGGCTACACCATCATCCagtccctcgtcctcg
acatCCGCGTGGACGAGAAGGTGAAGACAGCCATGAATGAGATCAACGCA
TCGAAGCGTttgcgggaggcggcggccgagaaggCTGAGGCCGACAAAAT
CGTCCAAGTcaaggccgccgaggcctcTGCGGAGAGCAAATACCTGAACG
GAATGGGCATTGCGCGTGAAAGAAAGGCGATTGTCGACGGCTTGCGGGGC
AGCGTGGAGGAGTTCTCGGAGACGGTAGAGGGGGCAACTCCCAAGGATGT
TATGGATCTGATCCTACTCACCCAGTACTTCGACATGCTCAAGGACGTGG
GCAACAACCCCACCCCGACGACGCTCTTCATGACTCACGGCCCGTCGGCG
GTCACGGAACTAAAGGAACAGCTTCGTGCGGGCATTATGCAGAACGCGGC
ATAAatgcctttttcttgctgctGTCTGCAGTGTATCGATACTTCTACTC
TGGGCATACAGGAACGCTTTGGGAATTTTGTGAGGATTTTACCACCTGGA
ATGAATTTAATCTGCTGGCCTATTGATAACGTCGTTGGCCGCGTGAGCGC
CAGGGTGCAACAGCTCGTCTGCGACTGCGGAACTAAGACCAAAGATAACG
TTTTCGTGGCCGTGCAGGTCATCGTCCAGTATCAGGTCATCGTCTCTCAG
GCCTACGACGCCTACTACAAGTTGACGGACCCCAATCTTCAAATTCGCTC
ATATGTGGAGGACATCGTACGATCGACAGTGCCTAAGATGGAGCTCGACA
TGGCTTTCGAGGCAAAAGAGGAGCTCGCCCACGCGATCCGGGACTCGTTG
CAGCAGACCATGGGCACGTACGGCTACACCATCATCCagtccctcgtcct
cgacatCCGCGTGGACGAGAAGGTGAAGACAGCCATGAATGAGATCAACG
CATCGAAGCGTttgcgggaggcggcggccgagaaggCTGAGGCCGACAAA
ATCGTCCAAGTcaaggccgccgaggcctcTGCGGAGAGCAAATACCTGAA
CGGAATGGGCATTGCGCGTGAAAGAAAGGCGATTGTCGACGGCTTGCGGG
GCAGCGTGGAGGAGTTCTCGGAGACGGTAGAGGGGGCAACTCCCAAGGAT
GTTATGGATCTGATCCTACTCACCCAGTACTTCGACATGCTCAAGGACGT
GGGCAACAACCCCACCCCGACGACGCTCTTCATGACTCACGGCCCGTCGG
CGGTCACGGAACTAAAGGAACAGCTTCGTGCGGGCATTATGCAGAACGCG
GCATAAatgcctttttcttgctgctGTCTGCAGTGTATCGATACTTCTAC
TCTGGGCATACAGGAACGCTTTGGGAATTTTGTGAGGATTTTACCACCTG
GAATGAATTTAATCTGCTGGCCTATTGATAACGTCGTTGGCCGCGTGAGC
GCCAGGGTGCAACAGCTCGTCTGCGACTGCGGAACTAAGACCAAAGATAA
CGTTTTCGTGGCCGTGCAGGTCATCGTCCAGTATCAGGTCATCGTCTCTC
AGGCCTACGACGCCTACTACAAGTTGACGGACCCCAATCTTCAAATTCGC
TCATATGTGGAGGACATCGTACGATCGACAGTGCCTAAGATGGAGCTCGA
CATGGCTTTCGAGGCAAAAGAGGAGCTCGCCCACGCGATCCGGGACTCGT
TGCAGCAGACCATGGGCACGTACGGCTACACCATCATCCagtccctcgtc
ctcgacatCCGCGTGGACGAGAAGGTGAAGACAGCCATGAATGAGATCAA
CGCATCGAAGCGTttgcgggaggcggcggccgagaaggCTGAGGCCGACA
AAATCGTCCAAGTcaaggccgccgaggcctcTGCGGAGAGCAAATACCTG
AACGGAATGGGCATTGCGCGTGAAAGAAAGGCGATTGTCGACGGCTTGCG
GGGCAGCGTGGAGGAGTTCTCGGAGACGGTAGAGGGGGCAACTCCCAAGG
ATGTTATGGATCTGATCCTACTCACCCAGTACTTCGACATGCTCAAGGAC
GTGGGCAACAACCCCACCCCGACGACGCTCTTCATGACTCACGGCCCGTC
GGCGGTCACGGAACTAAAGGAACAGCTTCGTGCGGGCATTATGCAGAACG
CGGCATAA

Synonyms

Publications