rna9210, rna9210 (mRNA) Nannochloropsis gaditana

Overview
Namerna9210
Unique Namerna9210
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length231
Alignment locationKK037252.1:111185..112225 +

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Properties
Property NameValue
ProductMajor intrinsic protein
Orig transcript idgnl|cribi|Naga_100019g60.513.mrna
Orig protein idgnl|cribi|Naga_100019g60.513
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:111185..112225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g60gene8934Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9210rna9210-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21491.1cds9180Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9210 ID=rna9210|Name=rna9210|organism=Nannochloropsis gaditana|type=mRNA|length=231bp
ATGGCGACAAAGCCTGAATGGGTATACTACGTGTGTGCGAGTACAATTTA
CAGAACCACTATCCCTGTGTTTCTCACGGGCGTACATACTGCATTACATC
CATTCGCGCGATTGCATGGCCAGGGAAATTTCAGAAGAAATATCATCATC
CATCGTAAATCTGATATGATTTGCAGAGTGAAGAATAGTATCTACGATCT
TGTATATGAAACTCAGATTGACACGTCTTGA
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protein sequence of rna9210

>rna9210-protein ID=rna9210-protein|Name=rna9210|organism=Nannochloropsis gaditana|type=polypeptide|length=300bp
MLEKLWDVLQAAEPFGNETLVVMIWTVCVCSLRIILFLLKIQEWVPNSLI
FANPYFVNRFVAAFSIKSAARNGGNGHCHAASNTAPDGLCTSSSAPSSVS
RASSSACRGVVPNMPIRIAESLLGRTPSVLVLVPAHLLGGIMGVTLVKLT
MGWSPLSCGSAAQALLPVMYGTSVDKANASMLMGWWVFVEEILVTFLFVL
SFLVVPELLLVNRLPRKYANACALPLLLVRLPDQTPAFSPAALFSFWFTS
RDALHKTYGIASVQYEHVFGPILGGFLAGVVMATCFPDDQTPLQQEDIVL
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mRNA from alignment at KK037252.1:111185..112225+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9210 ID=rna9210|Name=rna9210|organism=Nannochloropsis gaditana|type=mRNA|length=1041bp|location=Sequence derived from alignment at KK037252.1:111185..112225+ (Nannochloropsis gaditana)
ATGCTTGAGAAACTCTGGGATGTTTTACAAGCAGCCGAGCCCTTTGGAAA
CGAAACTTTGGTCGTCATGATCTGGACGGTTTGTGTTTGCTCTCTACGCA
TCATACTCTTCCTTTTAAAGATTCAAGAATGGGTGCCGAATTCCTTGATT
TTCGCGAATCCTTACTTTGTAAACCGcttcgtcgccgccttctccatcaa
GTCTGCAGCCAGGAATGGAGGTAACGGTCATTGTCATGCCGCGTCAAACA
CTGCTCCCGACGGCTTGTGCACATCCtcttccgctccttcctccgtctct
cgcgcctcctcttcggcctgCCGCGGAGTGGTACCTAACATGCCCATTCG
CATTGCGGAAAGCTTACTGGGGCGCACGCCATCAGTGCTAGTGCTGGTGC
CTGCGCACCTCTTGGGAGGCATCATGGGCGTGACCCTCGTGAAACTTACG
ATGGGATGGAGTCCGCTCTCCTGCGGCTCTGCCGCTCAGGCTTTACTGCC
CGTTATGTACGGAACGAGCGTTGATAAAGCGAATGCATCAATGCTTATGG
GCTGGTGGGTGTTTGTTGAGGAGATCTTGGTGACATTCTTATTCGTCCTG
AGCTTTCTAGTGGTACCGGAGCTACTTCTTGTCAATCGACTCCCACGAAA
GTACGCTAACGCCTGTGCGCTGCCCTTACTGCTTGTCCGCTTGCCCGATC
AGACTCCAGCCTTTTCTCCGGCGGCGCTCTTTTCATTCTGGTTCACGAGC
AGAGACGCCTTGCACAAAACGTACGGTATCGCGTCAGTCCAGTACGAGCA
CGGTAAGCACGGGGGTTGTACGGGTCTCACAGACTGATTCATTGTGAATA
AAATAATTGTAGATTCTTGTCTGCGAAAACGTCTGGGTAATCATTGTAAT
TCAAGCCCTCAGACGCGATCCTTTCGATTTACTGCCACAGTCTTCGGTCC
TATCCTGGGTGGCTTCTTGGCGGGCGTTGTCATGGCCACTTGCTTTCCTG
ACGATCAGACTCCTTTGCAACAGGAAGATATTGTATTATAG
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Coding sequence (CDS) from alignment at KK037252.1:111185..112225+

>rna9210 ID=rna9210|Name=rna9210|organism=Nannochloropsis gaditana|type=CDS|length=1806bp|location=Sequence derived from alignment at KK037252.1:111185..112225+ (Nannochloropsis gaditana)
ATGCTTGAGAAACTCTGGGATGTTTTACAAGCAGCCGAGCCCTTTGGAAA
CGAAACTTTGGTCGTCATGATCTGGACGGTTTGTGTTTGCTCTCTACGCA
TCATACTCTTCCTTTTAAAGATTCAAGAATGGGTGCCGAATTCCTTGATT
TTCGCGAATCCTTACTTTGTAAACCGcttcgtcgccgccttctccatcaa
GTCTGCAGCCAGGAATGGAGGTAACGGTCATTGTCATGCCGCGTCAAACA
CTGCTCCCGACGGCTTGTGCACATCCtcttccgctccttcctccgtctct
cgcgcctcctcttcggcctgCCGCGGAGTGGTACCTAACATGCCCATTCG
CATTGCGGAAAGCTTACTGGGGCGCACGCCATCAGTGCTAGTGCTGGTGC
CTGCGCACCTCTTGGGAGGCATCATGGGCGTGACCCTCGTGAAACTTACG
ATGGGATGGAGTCCGCTCTCCTGCGGCTCTGCCGCTCAGGCTTTACTGCC
CGTTATGTACGGAACGAGCGTTGATAAAGCGAATGCATCAATGCTTATGG
GCTGGTGGGTGTTTGTTGAGGAGATCTTGGTGACATTCTTATTCGTCCTG
AGCTTTCTAGTGGTACCGGAGCTACTTCTTGTCAATCGACTCCCACGAAA
GTACGCTAACGCCTGTGCGCTGCCCTTACTGCTTGTCCGCTTGCCCGATC
AGACTCCAGCCTTTTCTCCGGCGGCGCTCTTTTCATTCTGGTTCACGAGC
AGAGACGCCTTGCACAAAACGTACGGTATCGCGTCAGTCCAGTACGAGCA
CGTCTTCGGTCCTATCCTGGGTGGCTTCTTGGCGGGCGTTGTCATGGCCA
CTTGCTTTCCTGACGATCAGACTCCTTTGCAACAGGAAGATATTGTATTA
TAGATGCTTGAGAAACTCTGGGATGTTTTACAAGCAGCCGAGCCCTTTGG
AAACGAAACTTTGGTCGTCATGATCTGGACGGTTTGTGTTTGCTCTCTAC
GCATCATACTCTTCCTTTTAAAGATTCAAGAATGGGTGCCGAATTCCTTG
ATTTTCGCGAATCCTTACTTTGTAAACCGcttcgtcgccgccttctccat
caaGTCTGCAGCCAGGAATGGAGGTAACGGTCATTGTCATGCCGCGTCAA
ACACTGCTCCCGACGGCTTGTGCACATCCtcttccgctccttcctccgtc
tctcgcgcctcctcttcggcctgCCGCGGAGTGGTACCTAACATGCCCAT
TCGCATTGCGGAAAGCTTACTGGGGCGCACGCCATCAGTGCTAGTGCTGG
TGCCTGCGCACCTCTTGGGAGGCATCATGGGCGTGACCCTCGTGAAACTT
ACGATGGGATGGAGTCCGCTCTCCTGCGGCTCTGCCGCTCAGGCTTTACT
GCCCGTTATGTACGGAACGAGCGTTGATAAAGCGAATGCATCAATGCTTA
TGGGCTGGTGGGTGTTTGTTGAGGAGATCTTGGTGACATTCTTATTCGTC
CTGAGCTTTCTAGTGGTACCGGAGCTACTTCTTGTCAATCGACTCCCACG
AAAGTACGCTAACGCCTGTGCGCTGCCCTTACTGCTTGTCCGCTTGCCCG
ATCAGACTCCAGCCTTTTCTCCGGCGGCGCTCTTTTCATTCTGGTTCACG
AGCAGAGACGCCTTGCACAAAACGTACGGTATCGCGTCAGTCCAGTACGA
GCACGTCTTCGGTCCTATCCTGGGTGGCTTCTTGGCGGGCGTTGTCATGG
CCACTTGCTTTCCTGACGATCAGACTCCTTTGCAACAGGAAGATATTGTA
TTATAG
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Synonyms
Publications