rna9205, rna9205 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9205
Unique Name	rna9205
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4124
Alignment location	KK037252.1:103126..103964 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100019g65.515.mrna
Orig protein id	gnl\|cribi\|Naga_100019g65.515
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:103126..103964 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100019g65	gene8929	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9205	rna9205-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21493.1	cds9175	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:103126..103964+
coding sequence from alignment at KK037252.1:103126..103964+

mRNA sequence

>rna9205 ID=rna9205|Name=rna9205|organism=Nannochloropsis gaditana|type=mRNA|length=4124bp
CAGCGCATTAATACCTTGGAGAGGCCGAAATGCCATATGGTGGTATTTTG
AGAGTGGCTCTGCCATCCTGACAGCGTTTGTTTAAATTGCTTTCCTCGAG
CAATTTCACGCAGCGTAAAGTGCCATGGCTTGGATCAATGTAGTAGAGAG
AGAAATGCTTGTGGGTGGAAAATCGCTCGAAGTGGTGGTGGTCCCTGTCA
TGCAGGTGGCAGATGTCCAGGCAACTTGCCTCGTTGTCTGAGCGACACCG
CGACTTTGGGGTGTGATGTGGCCCTCTCACTCAGTTGCGTCCGATCCTGC
TATGTTAACAAAAAGTGTCCTGGCTGAATACTCGGAACTTTTCTTTTGCG
TGGATGGTGCGGAATAAGGTAGTAGATGTGGGTCTACACGACTCAGAGAA
AAGATCGTGGAAAGCCGCCAACCCTCCTTATCCGGGCAAACATATTTCGT
GGTGCGGCGTTGAGACTATTGCTGAGGAAAATGCGCAATAAGCACGCTGC
CTCATTATGCTACACGCTTTATGACCGTCTTTCTTGTCCTGTAGCATAGG
CATTATCCTCTTCCTGGTAATTGCCTGCGGAAAGTAATTCAACTTGCCCC
CCTTCTCTGTGAGCTAGGTTGAGTTTGACGCCGCAGCACTAAGGACTTTT
AATGGCACCATATGAAATAATCTTGTCTCATTTCTATATCCTCATATATT
GTACTTCACTAGTGATTTCTCGCACCGTGAACCTGCCGGATCTGGTCTCC
AAGGTGTTCTTGTATTTGCCCGACAGAGCCGCTCCAGAGAGCACTGGCGC
GCTTCCTCGCTTTTGAGCAATCCTTATTGACTTCATCAAGCAATATGACG
CGAGCTGGCCGACGGAGCCGCTCCAACTCGATGAGTAGCACGGGCAGTAA
TGCGCAGGGTTTGGTGTCAATTTCTGACAAGAAGATGGACATGCCCGTTG
TGCTGCCTACCTCAGAGTTTAACAGCTCCAACATCACCAATGTGAGCTGT
ACAAGTAGTACTTGTAGCAGTGTTGCCACCGATGGCAATGCCACAACTTT
CCCCCGAAAATTGGCGGAGATGCTACAGCACGAGTCGCACGTGATAGCGT
GGTCAATGCATGGTCTTTCCTTCTTCATCTGCGACAACGAGGCGCTCACC
TATAGGCTCTTGCCTAAATACTTTCGACACAATAAATTGACCAGTTTTCA
GCGTCAACTCAATTTGTACGGCTTCAGACGTATAACTAAAGGCACGGACA
CTGGCGCGTACTTTCACCCTCAGTTCCGCCGAGACCGCCCGGAGCTGGTG
AACCACATCCGCCGTATGCCCGGGCAGGGGGCCACCGCCACTGCCAAGTT
TCTGCCCCTCTACTACAAAGACGTCCAGAACTCCTCCCCTACAAGCATGC
CTGATGTGTCATTGGCTGAGAGGAGTGCCTTTATGGATGTGAGCGAAACA
AATGCAGGGATATCCGTGAAGAAGGCCAACCGCCGAAGCCGAAAAGGTGG
CCGAGCGCCGCGACGGCGACGCGATCGCTCCGAGTCAAGCGCCTCGAATG
TCTCGCAGGCTTCTTTGACGTCCTCTGCCGGCTCTGAATGCTCCTTTTCC
TCTGCTTCGACCGGAATCTCGAACCAGGATGGCAGCGACTGCGTCGATGG
ATCGGCTTTCGGGGCGGGCGGCCTCTCCTGTGGCCCGGGCGAGTATGCTT
CGGAGGGCAGTATGAGTTCCTTCCCCGTCGGTCCTCGCCATTACCAGTAC
AATGCACTTCCAGGAGGCGCTGAGAACTTGGACGGTGGGTCCGAGAGCGC
AATGGAGGGTTTCGATTTTGCGGACCCTGCGCCATCCCTCACACTGACCT
CTTCCTATGAGAGCGGCCTTTCTCTTCTTTCGGATGAGGGGAGCTACATG
AGCAGCAGCAGCGCGACGAGCAAGGGCGCTGTGGAGCACGCATTTCTCCC
CCATAACCATCAGCCCTTAGTGCGGCTGCCCAACGCCTTTGCGGCCTCTA
ACTCCTCCGGCAGGCAAGGCAAGGGTTATGTCTTGAACGGACAGAAGCTT
ACCTCCCGCTCCCCCTCGCCTTCCGCCCAGCACCAGGCCGCACGGGCGGA
AGTCGGCTTACCTCCCCGTCACTCCTCGGGGGGGGTCCAGTCAGTCGGCC
CAGTACGGTTCTTCATGCCTCCTCTCTCTGACCCTGTCGGGGCGGACGCC
ATGAAGATGTCCAAGAGCTGCAGCGCCCGTGCAGCCGGCAACAAGATGAT
CGAAGGCGACGAGGACATTAAAGTTACTGCCACGCTATACCACGGGTCTA
TCAACGGCGCAAACGTGACCAGCAACAACACTGGTGAAAGTGACAAGAAC
AAACTTCTTTCAGGGAGTGCATTGCCTCGCACATTCTCCGCGTCTTCTTT
CTCCCAGTGGCTTAACAGCGGCAGTAATTCTCAGACAACAGCCCAGACGT
CGCCCCATCCCGCCGTGCTTCTTCCTGCCAAGATGGACTTTCGCCCACTT
TCTTCCTGCGGAACGAATCTGGGATCAGAGACCGTTGGTTCGGACTTGGT
AGGGACCACGGAGCTTTCCTCTCCCTCTACGACTACCTCGTCTGTGTCGA
TGTCGCCCACCTCCCGCGCTCCAAGCTCGCCCCCTCTTCCCCTTCTGAAA
ATAAACCGCTGCTCCTCCATGAGCTCGGAGCTTTGGCGTGGGTGGGGTTC
GACAGAGGACTTAGAGGCTCTCGCGGACCTGGACACGTCGATCGACGACA
TTTTCGGGTCAGCGGGCCCCGAGAGCGACATGACTGTGCAGTCTGCGGGA
GGCTGGGATTGGAGCCAGGGCCAGAACGCGGAACCTGCTCGTCCACAGAG
CTACTCCACGAGCGGCCCATCGCAAGCGGCAGCCACTGGAGTCAGTGCCC
TTGGAGCCTTGGTTGGTATAAAGGCATCATAAAGGTGGAAATGTGGATAT
AATACGAGAATTCAGGCAGCCGTGGAAGAAGTGAGCGACGTAATATACTC
CCCGCCGGCTCAAGCCTAGTTGAAGAGCAACAATACGGCTCTGTATAATT
ACTGTCAGTCCCCTGAGCTCGGCAAGGGCCCCATGTAGGAGGTGAAGTGA
AAGATAAGTCTCAAGAGACGTTATGGGGCTGAAAGTTTTTTTGTGTTTTG
CGCATTGATGAGATTTTTTTGGTGCTCGAGGTGTGAGAATGTACGTGCGT
GTACAGAGAAGCCGAGATAGAGCGAACCAGAGATGAAGATGATTTGATTT
CAATCGGAAGAGGAACGTTGTAAATCGAATAAACACTGAGGAATTGAAGC
CTCAGGAGGAAGGAAGGCACATGAAAAGACGATGCGTGTTAAGGCATGCC
ATTTTATGACATACTTAGGAAGAAGTGATGAACGTTGGGCTGAGACGAAT
TTAAAAAAAAAAAATGACGAGGAAAAGATGATGAAATATTGAGGAGGTAT
CGATATGCAGTCAAAAATCAGTCAAGTGTGCAGAAGCGGTAGCTAGGTCA
AAGACGCACGTACAGGTTCAGGCGAGGGCGACACTACGTGAAGTATTGTG
AAGGGAGGGACGAGGTGGAGGATACAGTGGGAATGCTGGACAGCCAGATG
GTGGCGTAGGCGTTGTAAATATTGTCTGCATACGGAGAAAGATGCTGAGA
ATGAAGGGCTTGACACGAAATTCGTGGGACAGGGAGGATAGTAGCGCTGC
TTCGCTTTCGTGGAGGTCGGTGCGAGAACTGTGCAAGCAGTGGATGAGCG
GTCCAAACGAAAGTCGTAGCATGAACTCTTTGGGGCTTACTCCACCTATC
CATTATACAGATACCGTTGATTGGGATCGTATGGTTCTGCACAGTGTGCT
ATGGGAAGCTGTCAAACTTCGAATTAGATCTTCAAAGAGACCCAAATGCA
TTCCAATATCAAAAGGAGATGAACATGTCAAAGAGAGATGCTGGGAATAA
CCTTGAATCTTCTTAATTTTACGCTTTTCTGTGCATCTCTTCTAATTAGG
TTCATCAGCGACTTACCCTTCTTCATTTCCCCCAGGGTTCAATGTCATAA
GCGGGCACCAACTGCCACCGTTTACATCACGAAGGATTATGATATCTGTC
TCTCTTTTCCCTCTTTACTTATCC

protein sequence of rna9205

>rna9205-protein ID=rna9205-protein|Name=rna9205|organism=Nannochloropsis gaditana|type=polypeptide|length=148bp
MAFRPLQDPAPSSTPLSPASNPVCDASLRDKSRIRPESIVGLRLKCTCKF
FKRPWCCFGGQGCFSQTTHESDTRFLGWAEKKFRTMLIKLGLMSTRQPDG
KYDRQRQTRMRCTGAELKAIERGCTPLVIKLSTDTLTWPSKEEVLHSI

mRNA from alignment at KK037252.1:103126..103964+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9205 ID=rna9205|Name=rna9205|organism=Nannochloropsis gaditana|type=mRNA|length=839bp|location=Sequence derived from alignment at KK037252.1:103126..103964+ (Nannochloropsis gaditana)
ATGGCATTTCGGCCTCTCCAAGGTATTAATGCGCTGTGTCTCGTATAAAC
TCCGATGGCTCCAATGAAAAATCAGAAACTTTGTTCAAGTTATATTTTTT
TTCGACCGTCTACTTGTTAGAGAATACATGATAGTGTACTTGGATACGTG
AAACATAGAGGCATATGCGCGCGGTGAATTTTTGCTTGTGTCACATTGGG
ACGCGGTGTCcgtcggggggaaaggggttgAACCAGCTGCTACTCGGGAA
ATATTGAAATTTCTGCGGCGGCTCGTACGCTGATCTTGCAGATCCGGCGC
CAAGTTCaacgcctctttctccagccTCCAATCCTGTCTGCGATGCGTCT
TTGCGCGACAAATCGCGCATACGGCCAGAATCTATCGTTGGTCTGAGATT
AAAATGTACTTGTAAATTTTTCAAACGTCCGTGGTGCTGTTTCGGAGGGC
AAGGCTGTTTTTCCCAGACGACGCACGAAAGCGATACGCGTTTTTTGGGT
TGGGCCGTATTTATGTGGAATTTATGAATACTAGTATCTAGCTAATTATA
TTTGCGCCCTAGTCATGTGCCTAGACCATGGGCTTTATGAATTGTTATAC
ATCCTCATGTATTTCTTCCGGCTCatcaggaaaagaaattcCGCACAATG
TTGATAAAGTTGGGCTTGATGTCGACTCGCCAACCAGATGGGAAATACGA
CCGACAGAGACAAACGCGAATGAGATGTACAGGGGCAGAGCTAAAGGCAA
TTGAAAGGGGCTGCACGCCACTAGTAATTAAATTGTCCACAGATACTTTG
ACGTGGCCGAGTAAAGAAGAAGTGCTCCATAGCATATGA

Coding sequence (CDS) from alignment at KK037252.1:103126..103964+

>rna9205 ID=rna9205|Name=rna9205|organism=Nannochloropsis gaditana|type=CDS|length=1341bp|location=Sequence derived from alignment at KK037252.1:103126..103964+ (Nannochloropsis gaditana)
ATGGCATTTCGGCCTCTCCAAGATCCGGCGCCAAGTTCaacgcctctttc
tccagccTCCAATCCTGTCTGCGATGCGTCTTTGCGCGACAAATCGCGCA
TACGGCCAGAATCTATCGTTGGTCTGAGATTAAAATGTACTTGTAAATTT
TTCAAACGTCCGTGGTGCTGTTTCGGAGGGCAAGGCTGTTTTTCCCAGAC
GACGCACGAAAGCGATACGCGTTTTTTGGGTTGGGCCgaaaagaaattcC
GCACAATGTTGATAAAGTTGGGCTTGATGTCGACTCGCCAACCAGATGGG
AAATACGACCGACAGAGACAAACGCGAATGAGATGTACAGGGGCAGAGCT
AAAGGCAATTGAAAGGGGCTGCACGCCACTAGTAATTAAATTGTCCACAG
ATACTTTGACGTGGCCGAGTAAAGAAGAAGTGCTCCATAGCATATGAATG
GCATTTCGGCCTCTCCAAGATCCGGCGCCAAGTTCaacgcctctttctcc
agccTCCAATCCTGTCTGCGATGCGTCTTTGCGCGACAAATCGCGCATAC
GGCCAGAATCTATCGTTGGTCTGAGATTAAAATGTACTTGTAAATTTTTC
AAACGTCCGTGGTGCTGTTTCGGAGGGCAAGGCTGTTTTTCCCAGACGAC
GCACGAAAGCGATACGCGTTTTTTGGGTTGGGCCgaaaagaaattcCGCA
CAATGTTGATAAAGTTGGGCTTGATGTCGACTCGCCAACCAGATGGGAAA
TACGACCGACAGAGACAAACGCGAATGAGATGTACAGGGGCAGAGCTAAA
GGCAATTGAAAGGGGCTGCACGCCACTAGTAATTAAATTGTCCACAGATA
CTTTGACGTGGCCGAGTAAAGAAGAAGTGCTCCATAGCATATGAATGGCA
TTTCGGCCTCTCCAAGATCCGGCGCCAAGTTCaacgcctctttctccagc
cTCCAATCCTGTCTGCGATGCGTCTTTGCGCGACAAATCGCGCATACGGC
CAGAATCTATCGTTGGTCTGAGATTAAAATGTACTTGTAAATTTTTCAAA
CGTCCGTGGTGCTGTTTCGGAGGGCAAGGCTGTTTTTCCCAGACGACGCA
CGAAAGCGATACGCGTTTTTTGGGTTGGGCCgaaaagaaattcCGCACAA
TGTTGATAAAGTTGGGCTTGATGTCGACTCGCCAACCAGATGGGAAATAC
GACCGACAGAGACAAACGCGAATGAGATGTACAGGGGCAGAGCTAAAGGC
AATTGAAAGGGGCTGCACGCCACTAGTAATTAAATTGTCCACAGATACTT
TGACGTGGCCGAGTAAAGAAGAAGTGCTCCATAGCATATGA

Synonyms

Publications