rna9191, rna9191 (mRNA) Nannochloropsis gaditana

Overview
Namerna9191
Unique Namerna9191
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1311
Alignment locationKK037252.1:67051..68536 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100019g79.460.mrna
Orig protein idgnl|cribi|Naga_100019g79.460
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:67051..68536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g79gene8916Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9191rna9191-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21438.1cds9161Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9191 ID=rna9191|Name=rna9191|organism=Nannochloropsis gaditana|type=mRNA|length=1311bp
ATGAAGCTTGGTAATCTTTTGCCCCCAACAGATGCATACTGGGCCACCAT
TTTTTTCCCCGCCTTGCTTGGATATCTTGTGCTGCTTCAGGCTGCTATGA
ATCGACGCCCTCTGTTGGGTAGTGTAGAACGCCTCCAACCGTCTGTCCTC
AACACTTTAATCGCGCCAGACGCTCAGTTGGAAATTATTGCCGAGGGTAA
TTTATGGGCAGAAGGTCCCTTGTGGGTGTCGGACGAGGACAGCGCAGACG
GTGGGTTCTTGCTCTGGAGTGACGTCAAAAAGAATCTTATCTATCGGTGG
GAGGAGGGTGGCGGTTTGTTCACCATCGGGAGGAGCGTCTTTTTGAAAGA
GAGTGGATGTCGGCCGTCTCTGCCACCTCTCGCGTCAGGCGGCGAAACGG
AGACGAAGGACGGCAACAGCAGCAGCGACGAGAGTTGCAGTGATGGTATC
TGTGGAGATGACGGGGCTCGATGCGCCACTTTGAGAGAGCCGGGCTCCAA
CGGGTTGACATTGGAGCCGGGATCGGGGCTGGTCGTCATGTGTGAGCATG
GGGAGCGTCGGGTCTCGCGCCTGGAGGCAAACGGGAGCTTCACCCCTCTC
GCTACCCACTACCAGGGCAGGCGGCTGAACTCGCCCAATGACCTGGTGTT
CGGGCCGGGCGGTGACTTGTATTTCACTGACCCGCCGTACGGGTTGAATG
GACTAGACGCGGACCCAGCGAGGGAGCTGGAAAGTTTCGGGGTATACCGG
GTCTCCAAGGAGGCGATGGAGCAGCAGGTGGTCTCCTCGGCCAGGGGAAG
CGCGGAGGTGCAACTGGTCTTTGATGGACTGAAGCGACCGAACGGTCTGG
CCTTTTCCCCTGATTTCACACATCTATACGTGGGAGATAGCGACGCCGAG
GACCCGCACTGGGTCGTGTTCGAGATGGATGCGAGCACAGGCCTGGTGAA
AGGGAAGGAAGGCGCGCGTGTCTTTGCAGACGCTCGGGCTTACCAAGAGA
GAGATGACGCTGGAGGCAAAACACGCATCGGCAATCCAGACGGCCTTAAA
GTGGATGAAGATGGGAATATATGGGCCACAGGACCTGGGGGAGTTTTGAT
TTTCTCTCCCCAGGGAGAGCGGCTGGGAACGATTTTGACGGGAAAAAAAA
CGGGCAATGTTGCTTTTGGAGGAAAAGAGAAGTCCAGGGGAGGAAAGGGG
ATGTTTTTGTACGTGTGTGCCAACGATGTTGTAGCTCGTATTCCGATATT
GGTGAGGCCTGCGCCCTCCCCTCCCATGAAGCGAGTTGTCGAAGAGGCGT
CTCGCTCTTGA
back to top

protein sequence of rna9191

>rna9191-protein ID=rna9191-protein|Name=rna9191|organism=Nannochloropsis gaditana|type=polypeptide|length=466bp
MEQDEEEEEEAEEEDGEDEEDSIPPRRHLRRPQHEPARPVLPPRPPPPQW
LPPSGRPRQPSRGGRRVSGGPGDAGSTIARGKGQQARTPSEALPAIPSNS
RAFPLQVRGRALVPGTPSLHADPSTPSSRSYPLPRYLRHVQSKIKPQVER
ARRQAGAGPRAKGREGGREEGRKSGREKKTETVGGPVLKNDAVEATRRPG
KEGTGVGALGLGEKGRERRSEAKAAVRRASKAMRECARPASASLSNLRRA
DSYARSFQSSTASSGPEIAEAFLSGPLGGQLRGTGGGKVEDGMREERGHG
GKLREPRRTRQLRLARVTEKEAAGRERRREVPGTRGQAMGVDEADADTRR
VLKGRIAPEGQEEEMEESEEEESEEEESEEEEEEEEGSEEEESEEEEEEE
EEEEEEGATVLSEGETVLSLSSSSQSSYTSLSSSSATSSHESSLPTYSIS
SSLVSSDDSYEVDFVS
back to top

mRNA from alignment at KK037252.1:67051..68536+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9191 ID=rna9191|Name=rna9191|organism=Nannochloropsis gaditana|type=mRNA|length=1486bp|location=Sequence derived from alignment at KK037252.1:67051..68536+ (Nannochloropsis gaditana)
atggagcaagacgaggaagaagaagaggaagcggaagaagaggatggaga
ggatgaggaagataGCATTCCTCCGCGGCGCCACCTCAGACGACCTCAGC
ACGAGCCCGctcgccccgtcctccctcctcgcccgccccctccccagtGG
CTTCCCCCCTCGGGAAGACCCCGCCAGCCctctcgaggaggaaggagggt
ctcGGGGGGCCCCGGGGACGCAGGGTCCACAATCGCCCGAGGCAAGGGTC
AGCAGGCTCGAACGCCCTCCgaggccctccccgccattCCGAGTAACAGT
CGCGCATTCCCCTTGCAGGTCCGAGGCAGGGCCCTTGTTCCAGGCACACC
CAGCCTCCACGCCgatccctccaccccctcctcccggtcctACCCCCTAC
CTCGCTACCTTCGCCACGTCCAGTCCAAGATCAAGCCGCAGGTCGAGCGC
GCGCGTCGCCAGGCCGGGGCAGGCCCGAGGGcgaagggcagggagggagg
gagggaggaagggaggaagagcgggagggagaagaaaacgGAGACGGTGG
GTGGGCCCGTATTAAAGAACGATGCAGTCGAGGCGACTCGACGtccaggc
aaggaggggacaggggTTGGCGCCCTAGGTcttggggagaaagggaggga
gcgacggagcGAGGCGAAGGCAGCAGTGAGGCGGGCGTCCAAGGCAATGA
GGGAGTGCGCTCGcccggcctctgcctccctgtccAACTTGCGCCGCGCT
GACTCCTATGCTCGGTCGTTCCAAAGCTCAACGGCCTCCTCCGGACCCGA
GATCGCCGAAGCCTTCCTCTCAGGGCCCCTGGGCGGGCAGCTTCgaggga
cgggcgggggcaaggtggaggatggcatgcgcgaagagagggggcatgga
ggaaagctGAGGGAACCGAGGCGCACGAGGCAGCTGCGCCTTGCCCGGGT
CAccgagaaggaagcggcagggagggagcgaagacGAGAGGTGCCGGGTA
CGCGCGGGCAGGCAATGGGCGTTGACGAGGCAGACGCTGATACGAGGAGG
GTCTTGAAGGGCCGGATCGCGCcggaagggcaagaagaggagatggaaga
gagtgaggaggaggagagtgaggaggaggagagtgaggaggaggaggagg
aggaggaggggagtgaggaggaggagagtgaggaggaggaggaggaggag
gaagaggaggaggaggaaggcgcaaCAGTTTTGAGTGAAGGCGAAACAGT
TTTGAGtctgtcgtcctcttcccagTCCTCGTATActtcactctcctcct
cttccgccacaTCCTCACATgaatcttccctcccaacgtactctatctcc
tcctccctggtaTCTTCAGACGATTCCTACGAAGTCGACTTCGTTTCCTG
AATTCTAAGTAACGATGCAATATAAAATTAAGCAAGCTCGCCCCAAAAAA
ACCCAAACCGAAAACATGAAGACATGAACGCATCCC
back to top

Coding sequence (CDS) from alignment at KK037252.1:67051..68536+

>rna9191 ID=rna9191|Name=rna9191|organism=Nannochloropsis gaditana|type=CDS|length=1401bp|location=Sequence derived from alignment at KK037252.1:67051..68536+ (Nannochloropsis gaditana)
atggagcaagacgaggaagaagaagaggaagcggaagaagaggatggaga
ggatgaggaagataGCATTCCTCCGCGGCGCCACCTCAGACGACCTCAGC
ACGAGCCCGctcgccccgtcctccctcctcgcccgccccctccccagtGG
CTTCCCCCCTCGGGAAGACCCCGCCAGCCctctcgaggaggaaggagggt
ctcGGGGGGCCCCGGGGACGCAGGGTCCACAATCGCCCGAGGCAAGGGTC
AGCAGGCTCGAACGCCCTCCgaggccctccccgccattCCGAGTAACAGT
CGCGCATTCCCCTTGCAGGTCCGAGGCAGGGCCCTTGTTCCAGGCACACC
CAGCCTCCACGCCgatccctccaccccctcctcccggtcctACCCCCTAC
CTCGCTACCTTCGCCACGTCCAGTCCAAGATCAAGCCGCAGGTCGAGCGC
GCGCGTCGCCAGGCCGGGGCAGGCCCGAGGGcgaagggcagggagggagg
gagggaggaagggaggaagagcgggagggagaagaaaacgGAGACGGTGG
GTGGGCCCGTATTAAAGAACGATGCAGTCGAGGCGACTCGACGtccaggc
aaggaggggacaggggTTGGCGCCCTAGGTcttggggagaaagggaggga
gcgacggagcGAGGCGAAGGCAGCAGTGAGGCGGGCGTCCAAGGCAATGA
GGGAGTGCGCTCGcccggcctctgcctccctgtccAACTTGCGCCGCGCT
GACTCCTATGCTCGGTCGTTCCAAAGCTCAACGGCCTCCTCCGGACCCGA
GATCGCCGAAGCCTTCCTCTCAGGGCCCCTGGGCGGGCAGCTTCgaggga
cgggcgggggcaaggtggaggatggcatgcgcgaagagagggggcatgga
ggaaagctGAGGGAACCGAGGCGCACGAGGCAGCTGCGCCTTGCCCGGGT
CAccgagaaggaagcggcagggagggagcgaagacGAGAGGTGCCGGGTA
CGCGCGGGCAGGCAATGGGCGTTGACGAGGCAGACGCTGATACGAGGAGG
GTCTTGAAGGGCCGGATCGCGCcggaagggcaagaagaggagatggaaga
gagtgaggaggaggagagtgaggaggaggagagtgaggaggaggaggagg
aggaggaggggagtgaggaggaggagagtgaggaggaggaggaggaggag
gaagaggaggaggaggaaggcgcaaCAGTTTTGAGTGAAGGCGAAACAGT
TTTGAGtctgtcgtcctcttcccagTCCTCGTATActtcactctcctcct
cttccgccacaTCCTCACATgaatcttccctcccaacgtactctatctcc
tcctccctggtaTCTTCAGACGATTCCTACGAAGTCGACTTCGTTTCCTG
A
back to top
Synonyms
Publications