rna919, rna919 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna919
Unique Name	rna919
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1710
Alignment location	CM002456.1:728405..730317 +

Link to JBrowse

Properties


Property Name	Value
Product	retinal pigment epithelial membrane protein
Orig transcript id	gnl\|cribi\|Naga_100022g32.827.mrna
Orig protein id	gnl\|cribi\|Naga_100022g32.827
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:728405..730317 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100022g32	gene882	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna919	rna919-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29728.1	cds919	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:728405..730317+
coding sequence from alignment at CM002456.1:728405..730317+

mRNA sequence

>rna919 ID=rna919|Name=rna919|organism=Nannochloropsis gaditana|type=mRNA|length=1710bp
ATGTCGTTACGAGAGCTGATATACTCTCAACAAGACGACGTTCATGGGAG
CGACTGTCCTTCAACCGAGGAACAACAGCCGATACATGCACCACAAGGCT
TAGAGGTCGCGAATGGCCTCCTGGAGGCCGCCATGTGGCGGCAGAGGTCA
AGAGACACGCCGAGATCCTGCCGATGGCGGGGCCTCCGACCAAGCAGGCG
GGCGCCCTTGTATCACTGGCCTACGTCCATACTCCCAGACTGCCAAGACA
AACCCGTCCTCTTGCACACGGTACTACTTCAGAGACTGCTGACCTTGTTT
GTGGCAGCACGCGATGTGGCAGCCGTTGCAACCACCCTCGGCCTCTTGCA
TGCGCTGCAGCCCCGCCTGGAGGACACTAGCTTTGAGGGAAATCTATGGC
TTTTGACCGAGCTGGCAGCGCGTGAAGCTGGTGACACTCCATATTCTGGG
AGGGATGACACCAATGACGCGGAGGCCGGGGCGAGGAGGCGACTTCCTTC
TGCACAAGGTCCTCGCGCCCGCCGGCTCCTTCTCTTTCTCCGCACCATGA
TGAGCGCCCGCATCCAGCTCCCAGAGGCAGCGGACGTTGAGAATGGACAT
AAAACCATAGCGCCGCCGAACACTTTGCGGATCCTGGCGCTGGCCAAGCT
CGTAAACTTCCTGGTGGAAGGTGGGCGTCTCTCCGAGGCGAGGGAGGCCT
TGCAACAAGAGTCCTTCTTGCGTCCCTTCGCCGCCAGCCCGTACCTGCGC
TCGATGAAAGCCTTGTTTGCCTGTCTGGAAGCAGGCCTTTCGGACGGCGG
CGGGGGGGACGGAGGGCGGGGCAGGAGGTTCTTCAACGACCTTGCCGCCG
CCCCAAGTCGATGCTTTGCGCCAGGCCCGCCGCAGCGAGGCAGCCCGGCG
TCTCTCCGATGGGCTCAAGCGGCTCTGGAGGAAATCCTCCGCGCTATGGA
CGCAGGAAAAGACCTACAGAGTGGCCTTCTCGCAACCTCCTTGGCCATGC
TCCGTATGGGGGGGGGGCAGAGGCGGAGGGAGCGGGTTTGCAACCTCGTT
CTCGCCCGCTGTCAGCGCCACCCGGACTCTCCTCGCGCCCAGGAAATTGC
CCACTCCGCCTCGCTGCTCGCGCGCGGGCAGGACCACAAGGCCACGCTCA
GGCATTTGAAGCGGTGGCAGGCCCTCGACCCCTCCTCCGACCGAGCCCTG
GCCGGCCTCCTGCATGCCTACCGGCGCCAGCTCCTCCGCTCCTATCGGGA
CCCAAAGAGCCCCGTTCTCCTCAGCCGCCCCCGCCTCACACGCGCCCTGA
TCGACCGCCTGCTCACGCTCCCCCCCCCCTTGGGCCCGCCCTCCCTCGGT
CCCTCCCCACTGTCGCCGCACCTGCGCTACTTCCGCCTCCTGGCCGCCTA
CCTGGGCCCGCTGCCTCCGCACAGGCCCGGGGGTCTCCACCGGGAGGGGC
CCGGCCGCGCCCCCGTCCGCCTGCACTGGGGCGACAGGGGGGCTCTAGAG
AGCGCGCTGGCGGGAGCGTACGAGGCGTGGAGTCCGGGCTGTCGTGGGGC
GGAAGGCTCGGCACTGGAGCTCTTCAACGTGGCGGACCTGGGACCCTGCC
CCCGGGAGAGAGCGTTCTCGTACCAGTGGGACCGGGTGCTGGGAGAGGAC
GGGTGGCCTCGGTCGCGACGGGGCGGGGAGATGGAGAGAATGTGGGCGCT
CGTCAAGTGA

protein sequence of rna919

>rna919-protein ID=rna919-protein|Name=rna919|organism=Nannochloropsis gaditana|type=polypeptide|length=577bp
MAERLYQTFFHLVLCFGISLGFRPPSLFSPMPSSLTALQAATSTTDSRNL
AGTTGTWNREGWIKGFETARSETSYEVKDIKEGSIPTDIRGTLFRNGHAK
FDVNGLEIAHPFDGDGMISALTFQDGRAFFRNRFVETEGYKREQKSQKIE
YRGTFGTQKPGGWLANIFDMRRKNVANTNVIFWGNRLLALWEGGLPHLMD
PITLQTLGESRLANVLKRNQNLCAHPRYDPATDRYVFFSTDPDPRKTKIT
LYEFDTDFKLVAERSENLQGFSLLHDMVITPSYYVFFKAPLDLQPLPWLL
GRTGVASCIRFQDDQPAVAYLIPRNNPSRPMVEIPVDPHFSFHFSNAFDD
SSTGEVVVDIIRVPKLYLTDTKGVTGDPIWRSVDYERDVPKSTLWRYRLN
PAQATHTKAELWDLYCDFPSIPASRTGQPYRYTYLAAGRDPTVPTPVGVV
AKFDVECGRLVDSWRAEPQEFISETVVVPRQGHEERGEGLEDEGYLMTYV
FNGETSLSQVLIFDVQKLGKGPVARLQLDSNIPLSLHGTWAPEAVYDGEE
ILRKFTLFTGLKKFEKVESGMAPIFEF

mRNA from alignment at CM002456.1:728405..730317+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna919 ID=rna919|Name=rna919|organism=Nannochloropsis gaditana|type=mRNA|length=1913bp|location=Sequence derived from alignment at CM002456.1:728405..730317+ (Nannochloropsis gaditana)
ATGGCGGAGCGTTTGTACCAAACTTTTTTTCATTTGGTTTTATGTTTTGG
GATATCACTCGGCTTTCGGCCTCCCAGCCTCTTCAGCCCGATGCCCTCAT
CTTTGACGGCCCTTCAGGCGGCAACTTCCACGACAGACTCGCGAAACCTC
GCAGGCACCACGGGAACATGGAATCGAGAAGGCTGGATCAAGGGATTCGA
AACTGCGCGGTCGGAGACCTCCTACGAGGTAAAGGACATAAAAGAGGGCA
GTATCCCGACCGACATCAGAGGAACGCTGTTCCGCAACGGACATGCCAAA
TTCGACGTGAATGGGCTGGAAATCGCGCATCCCTTCGATGGCGATGGGAT
GATTAGTGCTTTAACGTTCCAGGACGGTCGAGCATTTTTTCGCAACCGCT
TTGTCGAAACGGAGGGCTACAAACGGGAGCAGAAGAGTCAAAAAATCGAG
TACCGCGGTACCTTCGGAACTCAGAAGCCCGGGGGATGGCTCGCAAATAT
TTTCGATATGCGTCGTAAGAATGTGGCGAACACTAACGTGATCTTTTGGG
GCAATCGTTTGCTGGCTCTGTGGGAGGGCGGTCTCCCCCACCTGATGGAC
CCGATCACGCTGCAGACTCTGGGCGAGTCTCGGCTCGCTAATGTCCTCAA
ACGCAACCAAAACCTGTGCGCCCACCCGCGGTACGACCCGGCCACCGACC
GCTACGTCTTCTTCTCTACAGATCCAGACCCGCGGAAGACAAAGATTACT
CTCTACGAGTTCGACACGGACTTCAAGTGAGTAGCGGGTCATGACGCTAG
ATGGTGAAACACAGATAGCTGCGAGCCTCACGAAGAGGCCTTTGAACCGC
ACACTTGGAACGTCCGAGTGGCCTTACCCCAGCTCGAGTGTACTTGCGCG
TGGCTGTCCCTGTTGTGCCCTcgctcaccctccctcctcacgtccctccc
tccaggctggTGGCCGAGCGCTCGGAGAACCTCCagggcttctccctcct
gcacgaCATGGTGATCACTCCCTCCTACTACGTTTTCTTCAAGGCCCCAC
TCGACCTACAACCCCTCCCATGGCTGCTCGGCCGCACGGGCGTGGCCTCC
TGCATCAGGTTCCAGGACGACCAGCCCGCAGTTGCCTACCTGATCCCGCG
CAACAACCCGAGCAGGCCCATGGTCGAGATCCCAGTGGACcctcactttt
ccttccactttTCCAACGCTTTTGACGACTCCTCGACGGGGGAGGTTGTG
GTGGACATTATCCGCGTGCCCAAGCTCTACCTCACGGACACGAAGGGGGT
CACCGGGGACCCGATCTGGCGCTCTGTCGACTACGAGCGCGACGTCCCAA
AATCCACGCTCTGGCGCTACCGGCTGAACCCCGCTCAGGCCACGCACACA
AAGGCAGAGCTCTGGGACTTGTACTGcgactttccctccatccccgcctc
ccgcacaGGCCAGCCCTACCGCTACACGTACCTGGCCGCGGGCAGAGACC
CAACAGTGCCGACGCCGGTGGGCGTGGTGGCTAAGTTCGACGTGGAGTGT
GGTCGGCTCGTTGACTCGTGGAGGGCCGAGCCGCAGGAGTTCATCAGCGA
GACGGTGGTGGTGCCCCGGCAGGGACACGAggagcgaggcgagggcctgg
aggacgaggggtATCTGATGACCTATGTCTTCAATGGGGAGACCTCCCTG
TCGCAAGTTCTGATCTTTGACGTGCAGAAGCTCGGAAAGGGGCCTGTGGC
GCGACTGCAGCTTGATTCGAACATTCCTTTGTCTTTACACGGGACGTGGG
CGCCAGAAGCGGTGTACGATGGCGAAGAAATTCTGAGGAAGTTCACCCTC
TTCACGGGCCTGAAGAAGTTTGAGAAGGTAGAGAGTGGTATGGCGCCGAT
CTTTGAATTCTAG

Coding sequence (CDS) from alignment at CM002456.1:728405..730317+

>rna919 ID=rna919|Name=rna919|organism=Nannochloropsis gaditana|type=CDS|length=3468bp|location=Sequence derived from alignment at CM002456.1:728405..730317+ (Nannochloropsis gaditana)
ATGGCGGAGCGTTTGTACCAAACTTTTTTTCATTTGGTTTTATGTTTTGG
GATATCACTCGGCTTTCGGCCTCCCAGCCTCTTCAGCCCGATGCCCTCAT
CTTTGACGGCCCTTCAGGCGGCAACTTCCACGACAGACTCGCGAAACCTC
GCAGGCACCACGGGAACATGGAATCGAGAAGGCTGGATCAAGGGATTCGA
AACTGCGCGGTCGGAGACCTCCTACGAGGTAAAGGACATAAAAGAGGGCA
GTATCCCGACCGACATCAGAGGAACGCTGTTCCGCAACGGACATGCCAAA
TTCGACGTGAATGGGCTGGAAATCGCGCATCCCTTCGATGGCGATGGGAT
GATTAGTGCTTTAACGTTCCAGGACGGTCGAGCATTTTTTCGCAACCGCT
TTGTCGAAACGGAGGGCTACAAACGGGAGCAGAAGAGTCAAAAAATCGAG
TACCGCGGTACCTTCGGAACTCAGAAGCCCGGGGGATGGCTCGCAAATAT
TTTCGATATGCGTCGTAAGAATGTGGCGAACACTAACGTGATCTTTTGGG
GCAATCGTTTGCTGGCTCTGTGGGAGGGCGGTCTCCCCCACCTGATGGAC
CCGATCACGCTGCAGACTCTGGGCGAGTCTCGGCTCGCTAATGTCCTCAA
ACGCAACCAAAACCTGTGCGCCCACCCGCGGTACGACCCGGCCACCGACC
GCTACGTCTTCTTCTCTACAGATCCAGACCCGCGGAAGACAAAGATTACT
CTCTACGAGTTCGACACGGACTTCAAgctggTGGCCGAGCGCTCGGAGAA
CCTCCagggcttctccctcctgcacgaCATGGTGATCACTCCCTCCTACT
ACGTTTTCTTCAAGGCCCCACTCGACCTACAACCCCTCCCATGGCTGCTC
GGCCGCACGGGCGTGGCCTCCTGCATCAGGTTCCAGGACGACCAGCCCGC
AGTTGCCTACCTGATCCCGCGCAACAACCCGAGCAGGCCCATGGTCGAGA
TCCCAGTGGACcctcacttttccttccactttTCCAACGCTTTTGACGAC
TCCTCGACGGGGGAGGTTGTGGTGGACATTATCCGCGTGCCCAAGCTCTA
CCTCACGGACACGAAGGGGGTCACCGGGGACCCGATCTGGCGCTCTGTCG
ACTACGAGCGCGACGTCCCAAAATCCACGCTCTGGCGCTACCGGCTGAAC
CCCGCTCAGGCCACGCACACAAAGGCAGAGCTCTGGGACTTGTACTGcga
ctttccctccatccccgcctcccgcacaGGCCAGCCCTACCGCTACACGT
ACCTGGCCGCGGGCAGAGACCCAACAGTGCCGACGCCGGTGGGCGTGGTG
GCTAAGTTCGACGTGGAGTGTGGTCGGCTCGTTGACTCGTGGAGGGCCGA
GCCGCAGGAGTTCATCAGCGAGACGGTGGTGGTGCCCCGGCAGGGACACG
AggagcgaggcgagggcctggaggacgaggggtATCTGATGACCTATGTC
TTCAATGGGGAGACCTCCCTGTCGCAAGTTCTGATCTTTGACGTGCAGAA
GCTCGGAAAGGGGCCTGTGGCGCGACTGCAGCTTGATTCGAACATTCCTT
TGTCTTTACACGGGACGTGGGCGCCAGAAGCGGTGTACGATGGCGAAGAA
ATTCTGAGGAAGTTCACCCTCTTCACGGGCCTGAAGAAGTTTGAGAAGGT
AGAGAGTGGTATGGCGCCGATCTTTGAATTCTAGATGGCGGAGCGTTTGT
ACCAAACTTTTTTTCATTTGGTTTTATGTTTTGGGATATCACTCGGCTTT
CGGCCTCCCAGCCTCTTCAGCCCGATGCCCTCATCTTTGACGGCCCTTCA
GGCGGCAACTTCCACGACAGACTCGCGAAACCTCGCAGGCACCACGGGAA
CATGGAATCGAGAAGGCTGGATCAAGGGATTCGAAACTGCGCGGTCGGAG
ACCTCCTACGAGGTAAAGGACATAAAAGAGGGCAGTATCCCGACCGACAT
CAGAGGAACGCTGTTCCGCAACGGACATGCCAAATTCGACGTGAATGGGC
TGGAAATCGCGCATCCCTTCGATGGCGATGGGATGATTAGTGCTTTAACG
TTCCAGGACGGTCGAGCATTTTTTCGCAACCGCTTTGTCGAAACGGAGGG
CTACAAACGGGAGCAGAAGAGTCAAAAAATCGAGTACCGCGGTACCTTCG
GAACTCAGAAGCCCGGGGGATGGCTCGCAAATATTTTCGATATGCGTCGT
AAGAATGTGGCGAACACTAACGTGATCTTTTGGGGCAATCGTTTGCTGGC
TCTGTGGGAGGGCGGTCTCCCCCACCTGATGGACCCGATCACGCTGCAGA
CTCTGGGCGAGTCTCGGCTCGCTAATGTCCTCAAACGCAACCAAAACCTG
TGCGCCCACCCGCGGTACGACCCGGCCACCGACCGCTACGTCTTCTTCTC
TACAGATCCAGACCCGCGGAAGACAAAGATTACTCTCTACGAGTTCGACA
CGGACTTCAAgctggTGGCCGAGCGCTCGGAGAACCTCCagggcttctcc
ctcctgcacgaCATGGTGATCACTCCCTCCTACTACGTTTTCTTCAAGGC
CCCACTCGACCTACAACCCCTCCCATGGCTGCTCGGCCGCACGGGCGTGG
CCTCCTGCATCAGGTTCCAGGACGACCAGCCCGCAGTTGCCTACCTGATC
CCGCGCAACAACCCGAGCAGGCCCATGGTCGAGATCCCAGTGGACcctca
cttttccttccactttTCCAACGCTTTTGACGACTCCTCGACGGGGGAGG
TTGTGGTGGACATTATCCGCGTGCCCAAGCTCTACCTCACGGACACGAAG
GGGGTCACCGGGGACCCGATCTGGCGCTCTGTCGACTACGAGCGCGACGT
CCCAAAATCCACGCTCTGGCGCTACCGGCTGAACCCCGCTCAGGCCACGC
ACACAAAGGCAGAGCTCTGGGACTTGTACTGcgactttccctccatcccc
gcctcccgcacaGGCCAGCCCTACCGCTACACGTACCTGGCCGCGGGCAG
AGACCCAACAGTGCCGACGCCGGTGGGCGTGGTGGCTAAGTTCGACGTGG
AGTGTGGTCGGCTCGTTGACTCGTGGAGGGCCGAGCCGCAGGAGTTCATC
AGCGAGACGGTGGTGGTGCCCCGGCAGGGACACGAggagcgaggcgaggg
cctggaggacgaggggtATCTGATGACCTATGTCTTCAATGGGGAGACCT
CCCTGTCGCAAGTTCTGATCTTTGACGTGCAGAAGCTCGGAAAGGGGCCT
GTGGCGCGACTGCAGCTTGATTCGAACATTCCTTTGTCTTTACACGGGAC
GTGGGCGCCAGAAGCGGTGTACGATGGCGAAGAAATTCTGAGGAAGTTCA
CCCTCTTCACGGGCCTGAAGAAGTTTGAGAAGGTAGAGAGTGGTATGGCG
CCGATCTTTGAATTCTAG

Synonyms

Publications