rna9188, rna9188 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9188
Unique Name	rna9188
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1002
Alignment location	KK037252.1:57406..59955 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100317g3.5831.mrna
Orig protein id	gnl\|cribi\|Naga_100317g3.5831
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:57406..59955 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100317g3	gene8913	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21515.1	cds9158	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9188	rna9188-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:57406..59955-
coding sequence from alignment at KK037252.1:57406..59955-

mRNA sequence

>rna9188 ID=rna9188|Name=rna9188|organism=Nannochloropsis gaditana|type=mRNA|length=1002bp
ATGGTGACCAACGGCGAACACACACCTGCTGAGGATGAAGTGCAGCAGGA
GGTGCAAGGCGAGGAGCAAGCGCAGGAAGAAGAAGTGAATGCAGAGGAGG
AGGACTTGGCTGTTCCCAACGGGGAAGGTGGTGGAGAGACTGAATCGGAG
GCGGTTGGGACCAAACGCCCACGAGAGGAAGAGGATGAAGCGAAAGAGGG
GGAGCATGCGGAAGAGGCGACAGCAGAGACAGAATCCACCGGAAAAGTAG
AAGAAGGTCATGCAGTCGTTGGACAACCGAGTAAGAAACAGGCGACCACC
GAGGCCCGAGAGTCGAGCGCGGAAACCAACGCCGCCTTTGCCGAAGCCAA
TCAACACCAGGAGGTGATGGACGTGGCCAAGGACGTGGTGGGTCGTATCA
TTGGGAAAGGGGGAGAAACGATCCGAGACATCCAAACGCGGAGTGGCTGC
CAGTGCGTGATCGATCAAAGCGTCCCCGACGGAGAGCCCCGGAAATTAAC
CATCGTGGGCAAGCCCGAGCACGTAAAGAACGCGCGGGCCATGATCGAAG
GCGTGATGGAGGGGGGCCCTTCCGTGCTGGCGGATTTTCCGGAAGTGGCG
GGCAATTCCAAGGCGACAGTGGACTGCCCGCGGGGCCTGGTGGGACGATT
GATCGGGAAGGGGGGAGACATCGTCAGGGAGATCCAGTACAAGAGCAAGG
CAGTCATCCAGATCAATCAGTCCCTCCCGCAGGACCAGCCCTGCAAGGTG
ACCATCACGGGGGCACCCAAAGCCGTGCAAAGTGCACGTGAGATCATCAT
AGCCATCATGGAGCAGGGCGTTCAGGCCCTCCATCAGTATTCTGCGGGCG
GGGGCTCCAGCCACGCAGGCGGCGGCTTTCCCAGCGGAGGAAGCGGGGGA
GGACGGGGAAGAGGCGGGGGAGGCGCGCGCCTGTACCCCGTCCCTGTAGA
TGCGAGCACATGGGCAGTGGAGGTGCCCAAGAGCCAGTGGCATCGGCCGT
AG

protein sequence of rna9188

>rna9188-protein ID=rna9188-protein|Name=rna9188|organism=Nannochloropsis gaditana|type=polypeptide|length=719bp
MRIFKIVSLFVLLGLSCIPSLAAEECANIRLTAKVRPTAKRGILAGNGHA
KLTVILRNKDAVEGLNIKISLPSSLSVVRTTTRPRTPYVLPYAVENLEET
AIYWSDIDFARRNRRKLFHVKVQADDCAPKQLEINALAYLANATTTHCTV
PLSKPEVLNIRYAESKRTTTCVPTPAPSINLAEPFVPFGLGQRCAEASRL
APFGDRRLQEHLERGRLQDNTRVISARARHLQGIDTPQQCYEYCSLNGGA
PAPFFFNWNTVASECLCCAGECTLIRDPAFDAFKVIVAHKNISGNPLLAE
SFYDGQESGATSICADDSGNSYITGYFFQKFSVGDVTLKGKGYADIFVYK
INPRGGIMWARSFGAKNSAAGGSSIAVDTSGNSYVTGFFQGVMIVGVTIL
TPGSEQNVFVFKLDSGGQVVWAKNFGTIGIPYGQSIAVDLSGNSYTTGPF
EETMPVGNTTLTAVGLQDFFVIKLDSTGSPVWAKSFGSNLDDMGLGITVD
ASDNSFITGFFSGNMSVGNTTLPIIGSQDIYMIKLNSTGEPVWAQNFGGT
GEPQGNSIVVDASGNSYTTGFFYGLLNVGDIRFLSFSNAIFLIKLDSTGN
PVWAKNFTSVGTAEGNGIAVDAFENSYITGEFNGNLSVGSFSLTAPERQA
MCLLKLDPTGNPIWAQNYGGSVSSSGTGIDVDSSGNVYNAGSFEGDMEVG
SATLTSPGVKSPYIIKLGP

mRNA from alignment at KK037252.1:57406..59955-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9188 ID=rna9188|Name=rna9188|organism=Nannochloropsis gaditana|type=mRNA|length=2550bp|location=Sequence derived from alignment at KK037252.1:57406..59955- (Nannochloropsis gaditana)
AGGACGGCAGCCTCAACCTGCATTAATTAGCCAAGATAAATGCGAATATT
CAAGATCGTATCGTTGTTCGTCCTCCTAGGCTTATCCTGTATTCCATCTT
TAGCCGCCGAGGAATGTGCCAACATCCGACTGACTGCCAAAGTACGTCCT
ACCGCTAAGCGTGGGATCTTGGCAGGCAACGGTCACGCGAAACTTACCGT
CATCCTTCGGAACAAGGATGCAGTTGAAGGTTTGAACATTAAAATAAGCC
TACCCAGCTCGTTGTCGGTCGTACGGACTACGACTAGGCCTCGAACGCCC
TATGTTTTACCATATGCGGTGGAGAATCTGGAGGAGACTGCAATTTATTG
GTCAGACATCGATTTCGCTCGTAGGAATCGAAGAAAGCTCTTTCATGTCA
AAGTACAAGCAGATGATTGTGCTCCCAAGCAGCTGGAAATAAATGCGTTG
GCGTATCTCGCGAACGCTACAACGACGCATTGCACTGTACCGCTATCGAA
ACCAGAGGTTTTGAATATACGATACGCCGAGTCGAAGAGGACGACCACAT
GCGTGCCGACTCCAGCGCCCTCTATCAATCTTGCCGAACCTTTCGTACCG
TTCGGTCTAGGGCAGCGATGTGCTGAAGCGAGTCGTCTGGCGCCTTTCGG
AGACCGACGGTTGCAGGAGCATCTAGAGAGGGGAAGGCTGCAAGACAACA
CTCGCGTGATTTCAGCTCGAGCCCGCCATCTCCAGGGGATTGATACACCA
CAACAGTGCTATGAATACTGCTCGCTCAATGGGGGCGCGCCAGCACCTTT
CTTTTTCAACTGGAACACCGTTGCGAGTGAATGCCTTTGCTGTGCTGGGG
AGTGCACGTTGATCCGGGATCCTGCATTTGACGCATTTAAAGTCATTGTG
GCACACAAGAATATTTCGGGAAACCCTTTATTAGCTGAAAGCTTTTATGA
CGGCCAAGAGAGTGGTGCCACATCAATCTGTGCGGATGACTCGGGAAATT
CATACATAACTGGCTATTTTTTCCAAAAGTTTTCGGTGGGCGATGTTACT
TTAAAGGGGAAAGGATATGCTGATATTTTTGTGTACAAGATAAACCCGAG
AGGCGGTATAATGTGGGCGAGGTCGTTCGGGGCCAAGAATAGTGCTGCCG
GGGGAAGTAGCATCGCTGTGGATACGTCTGGTAACTCTTACGTCACAGGG
TTCTTTCAAGGAGTGATGATAGTTGGTGTCACCATTCTTACACCCGGCTC
AGAGCAGAATGTCTTTGTATTTAAACTTGATTCCGGGGGCCAGGTGGTTT
GGGCAAAGAATTTCGGGACTATAGGGATTCCATACGGCCAGAGCATCGCT
GTGGATTTGTCCGGGAATTCCTACACCACTGGACCTTTCGAGGAAACCAT
GCCCGTTGGTAACACCACTCTCACAGCTGTCGGACTTCAGGATTTTTTCG
TGATCAAACTAGATTCCACTGGTTCCCCCGTTTGGGCCAAGAGCTTCGGC
AGCAATCTAGATGACATGGGGCTTGGCATTACTGTGGATGCATCTGATAA
TAGCTTTATCACCGGATTTTTCAGTGGAAACATGTCGGTGGGTAATACTA
CATTACCTATCATTGGAAGTCAGGATATCTATATGATCAAATTGAATTCC
ACCGGGGAGCCGGTATGGGCGCAAAACTTTGGAGGTACTGGAGAACCGCA
AGGAAATAGCATCGTTGTAGATGCGTCCGGCAACTCCTACACAACTGGGT
TTTTTTACGGACTTTTGAATGTCGGCGATATAAGATTTTTGAGCTTCAGC
AATGCTATTTTTTTGATCAAATTAGACTCTACAGGCAATCCAGTATGGGC
GAAAAACTTTACGAGCGTAGGTACCGCAGAGGGAAACGGCATTGCAGTGG
ATGCATTCGAAAATTCCTACATCACCGGTGAATTTAACGGAAATTTGTCT
GTAGGAAGCTTCTCACTGACGGCACCGGAGAGGCAAGCCATGTGTCTTCT
CAAATTAGATCCCACAGGTAACCCGATATGGGCTCAAAACTATGGCGGCT
CCGTTTCCTCCTCAGGAACGGGTATTGATGTGGATTCTTCCGGCAATGTC
TACAACGCTGGAAGCTTTGAAGGAGACATGGAAGTAGGAAGCGCCACACT
CACATCTCCTGGTGTCAAAAGCCCCTACATAATCAAGCTAGGCCCCTAAT
CGAAATGAATTCTATTTCAGTGGGTGTACAAATCATGACAAATTTCAATG
ACACCACAAAATTAATCATTCAAGGGCTATCGTTGTGCACTCGTGTACAG
TGACAAAATAATTTGTATGCCCAAAGGAACTAAGAAGTCTCTACATCTCC
AAAATATGTCTTCAACATTCAACATTGGCATGGCATTCTTACCCTGCTAT
GTTCTCGGCAACTCATTAACGCCAAAGCTTTAAGCCTCTCGAAAACTGGT
CGGCAAGCAGCCAGTGCGATTTGTAGTTGTAATATTTGGGATGTTTTCTT
GGAAAAGGGGCGATTCTCTCTGAAGAAATATGGCAGATCATCGTCGTGCT

Coding sequence (CDS) from alignment at KK037252.1:57406..59955-

>rna9188 ID=rna9188|Name=rna9188|organism=Nannochloropsis gaditana|type=CDS|length=2160bp|location=Sequence derived from alignment at KK037252.1:57406..59955- (Nannochloropsis gaditana)
ATGCGAATATTCAAGATCGTATCGTTGTTCGTCCTCCTAGGCTTATCCTG
TATTCCATCTTTAGCCGCCGAGGAATGTGCCAACATCCGACTGACTGCCA
AAGTACGTCCTACCGCTAAGCGTGGGATCTTGGCAGGCAACGGTCACGCG
AAACTTACCGTCATCCTTCGGAACAAGGATGCAGTTGAAGGTTTGAACAT
TAAAATAAGCCTACCCAGCTCGTTGTCGGTCGTACGGACTACGACTAGGC
CTCGAACGCCCTATGTTTTACCATATGCGGTGGAGAATCTGGAGGAGACT
GCAATTTATTGGTCAGACATCGATTTCGCTCGTAGGAATCGAAGAAAGCT
CTTTCATGTCAAAGTACAAGCAGATGATTGTGCTCCCAAGCAGCTGGAAA
TAAATGCGTTGGCGTATCTCGCGAACGCTACAACGACGCATTGCACTGTA
CCGCTATCGAAACCAGAGGTTTTGAATATACGATACGCCGAGTCGAAGAG
GACGACCACATGCGTGCCGACTCCAGCGCCCTCTATCAATCTTGCCGAAC
CTTTCGTACCGTTCGGTCTAGGGCAGCGATGTGCTGAAGCGAGTCGTCTG
GCGCCTTTCGGAGACCGACGGTTGCAGGAGCATCTAGAGAGGGGAAGGCT
GCAAGACAACACTCGCGTGATTTCAGCTCGAGCCCGCCATCTCCAGGGGA
TTGATACACCACAACAGTGCTATGAATACTGCTCGCTCAATGGGGGCGCG
CCAGCACCTTTCTTTTTCAACTGGAACACCGTTGCGAGTGAATGCCTTTG
CTGTGCTGGGGAGTGCACGTTGATCCGGGATCCTGCATTTGACGCATTTA
AAGTCATTGTGGCACACAAGAATATTTCGGGAAACCCTTTATTAGCTGAA
AGCTTTTATGACGGCCAAGAGAGTGGTGCCACATCAATCTGTGCGGATGA
CTCGGGAAATTCATACATAACTGGCTATTTTTTCCAAAAGTTTTCGGTGG
GCGATGTTACTTTAAAGGGGAAAGGATATGCTGATATTTTTGTGTACAAG
ATAAACCCGAGAGGCGGTATAATGTGGGCGAGGTCGTTCGGGGCCAAGAA
TAGTGCTGCCGGGGGAAGTAGCATCGCTGTGGATACGTCTGGTAACTCTT
ACGTCACAGGGTTCTTTCAAGGAGTGATGATAGTTGGTGTCACCATTCTT
ACACCCGGCTCAGAGCAGAATGTCTTTGTATTTAAACTTGATTCCGGGGG
CCAGGTGGTTTGGGCAAAGAATTTCGGGACTATAGGGATTCCATACGGCC
AGAGCATCGCTGTGGATTTGTCCGGGAATTCCTACACCACTGGACCTTTC
GAGGAAACCATGCCCGTTGGTAACACCACTCTCACAGCTGTCGGACTTCA
GGATTTTTTCGTGATCAAACTAGATTCCACTGGTTCCCCCGTTTGGGCCA
AGAGCTTCGGCAGCAATCTAGATGACATGGGGCTTGGCATTACTGTGGAT
GCATCTGATAATAGCTTTATCACCGGATTTTTCAGTGGAAACATGTCGGT
GGGTAATACTACATTACCTATCATTGGAAGTCAGGATATCTATATGATCA
AATTGAATTCCACCGGGGAGCCGGTATGGGCGCAAAACTTTGGAGGTACT
GGAGAACCGCAAGGAAATAGCATCGTTGTAGATGCGTCCGGCAACTCCTA
CACAACTGGGTTTTTTTACGGACTTTTGAATGTCGGCGATATAAGATTTT
TGAGCTTCAGCAATGCTATTTTTTTGATCAAATTAGACTCTACAGGCAAT
CCAGTATGGGCGAAAAACTTTACGAGCGTAGGTACCGCAGAGGGAAACGG
CATTGCAGTGGATGCATTCGAAAATTCCTACATCACCGGTGAATTTAACG
GAAATTTGTCTGTAGGAAGCTTCTCACTGACGGCACCGGAGAGGCAAGCC
ATGTGTCTTCTCAAATTAGATCCCACAGGTAACCCGATATGGGCTCAAAA
CTATGGCGGCTCCGTTTCCTCCTCAGGAACGGGTATTGATGTGGATTCTT
CCGGCAATGTCTACAACGCTGGAAGCTTTGAAGGAGACATGGAAGTAGGA
AGCGCCACACTCACATCTCCTGGTGTCAAAAGCCCCTACATAATCAAGCT
AGGCCCCTAA

Synonyms

Publications