rna9185, rna9185 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9185
Unique Name	rna9185
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	895
Alignment location	KK037252.1:44240..48277 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100679g2.445.mrna
Orig protein id	gnl\|cribi\|Naga_100679g2.445
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:44240..48277 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100679g2	gene8910	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21518.1	cds9155	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9185	rna9185-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:44240..48277-
coding sequence from alignment at KK037252.1:44240..48277-

mRNA sequence

>rna9185 ID=rna9185|Name=rna9185|organism=Nannochloropsis gaditana|type=mRNA|length=895bp
CCACGTAGCATCGCCAAGGCAAACCTCAAGTCGCTCCTTTACTGCGATTG
CTTCCTGACAAAGTTTGATTTGCATCCAATACATCTTCACAGCGTATGCC
CAGAAATCGATGCGAAACGTAATCGCTCTTGTCTTGCTTGCTGCCCAGTT
GCCCGCAGTCCCCGCCCTCCTTTCCTTCACGAATCCCCCTCCAAAGCAAC
CTGCCCTCCATTTCCGCCCTGGCCTTCCTACAGACAACCCCCTCATCCGC
CAAAGCATGTTAGAGGCTCGCATGAATCCAGCATTCCTCAAACCTGAGTA
CTTCACCATTGCCGAGCACCCTGGCCCGAATGCTGGCACGGGGCGAGCGA
CGACGGCAGGTTTTGGGCAAATCCGTCCCATCCTGGGAACGGGAGGACAA
GTCTGCGAGCTCGCGTCGGTATACGTCCTCCCTGCTTCAAGAAAGCAGAG
AATAGGGTCGCGCATAATTGCTAGGCTCGTGGAGAATTTCCGAGCCGATA
ACAGCAGAGCGCGCCAGGTCCCCTCTTCTTCCCAGTCTGTTCCTACTCCT
CGACTCGTCCTTCTCACCCTGGCAGACACGGCACCTTTCTACTCTTCCCA
CGGCTTTTTTGTGCTTCCAGACCCTGTCCGAGCCAAGCCACCCCTGCCAA
TGCTCTTTGTACTCGAGTATTTGGCCGGATCAGTGGTGGCGAGGCTTTCC
CGGGGCCCGGCGACCAAGTTGGTGTGTATGGAGCTGCAGGAGGGGGGAAA
CAGTTGGAGAATAGCTGCAAAACGCACGAATTAGTGTGGGAAGAAAGCAT
AAACGACGGATTAAAAGCGTCTGAAACGTCTATTTCTTGGTGGGTGTGGC
ATGACTCAAGACTCTTTGCACTGTCTTACATGATGTCTCCTGCTC

protein sequence of rna9185

>rna9185-protein ID=rna9185-protein|Name=rna9185|organism=Nannochloropsis gaditana|type=polypeptide|length=486bp
MVFYSSTSSTSTAIVSRATTFLFSRRLHFIVSLLVLCGTLLPVSSGTREA
ESGPASSAPGFSAAPPPLSLRPPPKAREETMSSPHYMPKSEGVEEVNLSA
ISDTMPLDPALSSSASKPDPTSSATSPLPRDQAPKIRTARRMPPIALPSF
IGLESGRPAAVLYPPHAALSPPLPLVVVLHAWGSNASEHAAYLGVSERLS
RFQFIALLPNGIKNSKGYRFWNAPACCNREGIAVDDLGYLTDLLQEARDR
LPVDPARVYLTGHSNGGQMALYLACRSGGEGHIRGLVSIAGFGPPPACPA
PRPCSALFIHGTDDAVVPFDTSLQAFDKWVEGEGCLAESPLSTPPAASLP
SSAIGASSPPTPTASSQPYCRLSKPSDPSSMLNPSEFPAPILPFSSPHSP
ASTCSQFTRDLDCDPSFAVGAKDPRLSSYRDANCALRGEETVVTQYVGCG
GEKGANVSFWRMEGASHVPAFSPDSLDAMLSFLLDM

mRNA from alignment at KK037252.1:44240..48277-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9185 ID=rna9185|Name=rna9185|organism=Nannochloropsis gaditana|type=mRNA|length=4038bp|location=Sequence derived from alignment at KK037252.1:44240..48277- (Nannochloropsis gaditana)
AAATCTTTGGCTAAAACGCACCAGGAGCCCTGCCGCAAGTCCTGCTATTT
CCTACTTACATCCCTCCGCAACACCCGCGACAGACCGGCGTATAAGCCCC
AAAATCAAGATTGTCTCTTGAAGAAAGAGTGTGCGACCGGGTGCCTGTTG
CCGAGAAGCTTTGAAAATAATTTATACCATGGTTTTCTATTCTTCAACCT
CCTCTACCAGCACCGCAATAGTCTCGCGAGCAACGACATTCCTTTTTTCA
CGGCGCCTTCACTTCATTGTAAGCCTTCTAGTACTTTGTGGCACCCTTTT
ACCTGTTTCATCTGGGACGAGAGAGGCTGAATCAGGCCCGGCTAGTTCTG
CGCCAGGATTTTCCGCCGCTCCCCCCCCACTCTCGTTGCGCCCCCCCCCA
AAGGCTCGGGAGGAAACGATGAGCTCTCCTCATTACATGCCAAAATCAGA
AGGCGTAGAAGAGGTAAATTTGTCCGCCATTTCGGATACCATGCCGCTCG
ACCCGGCTTTGTCTTCCTCCGCCTCCAAGCCCGATCCTACCTCAAGCGCC
ACCTCGCCTCTCCCCCGAGACCAAGCACCAAAAATTCGCACTGCAAGAAG
AATGCCTCCCATTGCCCTGCCCTCCTTTATTGGTTTGGAGAGCGGACGGC
CTGCGGCGGTCCTGTACCCCCCGCACGCGGCCCTGTCCCCTCCCCTTCCT
CTCGTCGTGGTCCTCCATGCCTGGGGCAGCAACGCCAGCGAACACGCTGC
CTACCTCGGGGTGTCCGAGCGTCTCTCTCGCTTCCAATTTATCGCCCTGC
TCCCCAACGGCATTAAAAACAGCAAGGGCTACCGGTTTTGGAACGCCCCT
GCCTGTTGCAACCGGGAGGGCATCGCTGTGGACGACCTCGGCTACCTGAC
CGACTTGCTCCAGGAGGCTCGCGACCGCCTCCCCGTGGATCCAGCCCGCG
TTTACCTCACGGGCCACTCCAACGGGGGCCAAATGGCTCTCTACCTTGCC
TGCCGGAGCGGCGGCGAGGGCCATATTCGGGGCCTGGTGTCCATCGCCGG
CTTCGGCCCCCCCCCCGCCTGCCCCGCGCCTCGACCCTGCTCCGCCCTCT
TCATCCACGGAACGGACGATGCCGTGGTGCCCTTCGACACGAGTCTGCAG
GCCTTTGACAAGTGGGTGGAGGGGGAAGGCTGTCTGGCGGAGTCCCCTCT
CTCTACTCCTCCCGCCGCCTCCCTCCCCTCCTCCGCCATCGGCGCCTCTT
CCCCGCCCACTCCCACGGCCTCGTCCCAGCCCTACTGCCGCCTCAGCAAG
CCCAGCGACCCCTCATCCATGTTGAATCCCTCGGAGTTCCCCGCTCCCAT
CCTCCCTTTCTCGTCCCCGCACTCGCCAGCCTCGACCTGTTCCCAGTTCA
CCCGCGACTTGGACTGCGACCCTTCCTTCGCGGTCGGCGCCAAGGACCCT
CGCCTGAGCTCGTACCGCGACGCAAACTGCGCATTGAGAGGTGAGGAGAC
GGTGGTCACTCAGTACGTGGGCTGTGGGGGTGAAAAAGGCGCGAACGTGA
GCTTCTGGCGGATGGAGGGGGCCTCGCATGTGCCTGCCTTTAGTCCAGAT
TCCTTGGACGCCATGCTCTCCTTCTTGCTGGATATGTAGGTGAGGCGAAG
AGGGGAGATGCACTGGAGAAGGAGGAGCGCGATAGGTTTTGACTTGGAAG
AATGAGCGGTGTAGGTGCCGTATGAAGGCGGGGAAATGCTGACCGTCGCA
GTAGGAAATTCGATCCCACCCTGATCCTCGTCGAGAGATGATGTTCGAGA
ATGGTGCTGAGGGAGACTTGAAGGGAATTGTACATGCCCCTATTTCTCAA
ATACTTGTGAAGATTCCGCACGCGGGCATGCTAGCAGATTTTCATGAGTT
TTGGGTGTTCATCTACCTTCAGGAAGGACACCATGTGCATGGAAGAGAGG
CGCTGGTATGGACAAATACGTCGTCCCGCACCCGCGTATTTGTTGCGCGA
GAACGTATGCTCGTGCTGCATTTGTATCAAAAGTATACCCTTTTGTCTCA
TTTGAATTAAAAAATGCATGCATGCACACAATTTGGAGAATCGAGGTGTT
TTCAGGTATATCTATATATCTATATATATATGTGTGTGTATATATCTCTA
AGCGTGCATAGCTGTAGAATGGCAATTGTAAATCGTTGGAATCCTGGCAG
ATATTTGTCGATTCTCTTTTAGGCGTCATTACAAAGAAGATTTTGAGCAC
GTGCGTGGGGCTTTCACGAATTTGAGGCAGCGTGCATGTCATGGGAGGTT
GTGTTAGCAATTGTAAGCAAATGACGAGAGTATGATGGGGGGAACTGAAA
CACTCATGCCCAGAAGAAATTCTCCGACATCTTGTTTTCTTTAAGCACAT
CTTATTAACAAAGTCGTAGGTAGAAAAATAAATTTTGTGAGTGGGTCATG
GTGCAAGGTCGAGGTCTGAAATACGCTCCTGACAAGCTTTTTTAGCGACT
TGCGATGTGGGCTGTAGTGTGTATATCTGGCGATTACTATTGCCATACCA
TGCCGGGAGGTTCAAGCGAGAACCAAGAGAAATGCACTTCACTAGCGGAA
GTAAGTCGCGGTAGTCAGAGGCGTGTTTCCTTGCGCCTAGTTACGTAAGT
CAGCATTGGTGAGATAGTTTTATCCCCAGCCATCATTAAAGAAATGCGCA
CCCACGAGGAAGATCTATGTCTCTATTCCACAGACCAAAACCATGCTGAG
GATCAAAGCATCCATTGCGAAACACAAATAGTGCCATAATGGGGGTGATC
ATCATTCTCTTTGTATTATGTCTTGCCATCTTTGTAAGGACTTCGATCTT
ATCGGATGCTGCAATTCCACAAGATTGGGCCGAAGGGATAGGCTCCTATG
ACATACTTTACAATCGCGAGCCGACAGAGCCGCACTTGCTCCCTGTCCTC
GGAAACGGAGTGATATCCTGGCAAATCGACAGTCCCTTTATTCTCGTCAA
TGGCCTCTACACACGTCGAGGGAACGATTCCGCGCGTGTTTGTTTGGCCC
GTTTGCCGTCTCTGCTGTCGGTTCATATACGGCCCTCTTTCGGGGCTGTT
GAGGTTTCTCTAAACCCCGTCATTCGAAACGACAGCCTTCCCATCCTTTC
CATTCTATCAAAAACGACCTCGAACTTTGTCGGAGAAGCGTTGGACCTGC
GGAGCGGGAGTTTCATGCGGCGTCTCCGCTTTTTCCGTTCTGCAAGTGAG
GACGTTGTTCGTACGGAGGCCGTTGTCGACGTCGAGCAGAGATGGTACGC
TCACAGATCCATCCACTCCCTGCTCGTGTTGGAGGTCCAAGCGACGACGC
GGACACCGACTGCATTGTCAGCGGAGCCGATGGAATTGCACATGGAACTA
AATACAGGCGTGGGAGATAGCACGGAGGAGGAAACGGGCGAAGCAGAGGA
ACCGGGAGAGGGAAAGGAGGAAGGAGGCAGTCGTCGCGCTATCCATGGGA
TACGAGGGCGCAGTCATTCAAAGCAGGGCGCTGAAGCGGACGTGGTTTTC
AGGAACCTTTCGGCCGAGTACCCGGGTCTATCTGTGTACACGGGCGTCTT
GCATGCCCCCGAGAACGCCTCTGCCGCCCCACCATCCATCGCCCTCGTCT
CCACACCCCTCCCCAGGTCGCTCCTTATCACCAACAATGAAACCTGGTAC
TTTCTTTCCGCTGTGCGCACCTCTTTGGGAGCGAGAGGGCGGGACGGAGG
AAGGGAGGGAGGGGGAGCCGATCGCCTGTTGCAGGAAACCTTGTTAGACC
ACCGACTCGCCCAAGGAATGGCAGCTTCTGGAGAGCTCTATGAACTGCAC
AAAGACGACTGGAAGCAGTGGTGGAGGCAGGTGGGGATAGAAATGGAGAC
GAGGGGAGGGCGGGAGGAAGGCCAAAAGGGAGGGTGGGAAGGAGGGCGGG
AGGGAGGGACCGGAGGGTCGGGCGTGATTCCGTTACCGGCGGCTGTGAAT
GCCTCCTTGTATGCCCTGGGAAGCACAGCTCGGGACGA

Coding sequence (CDS) from alignment at KK037252.1:44240..48277-

>rna9185 ID=rna9185|Name=rna9185|organism=Nannochloropsis gaditana|type=CDS|length=1461bp|location=Sequence derived from alignment at KK037252.1:44240..48277- (Nannochloropsis gaditana)
ATGGTTTTCTATTCTTCAACCTCCTCTACCAGCACCGCAATAGTCTCGCG
AGCAACGACATTCCTTTTTTCACGGCGCCTTCACTTCATTGTAAGCCTTC
TAGTACTTTGTGGCACCCTTTTACCTGTTTCATCTGGGACGAGAGAGGCT
GAATCAGGCCCGGCTAGTTCTGCGCCAGGATTTTCCGCCGCTCCCCCCCC
ACTCTCGTTGCGCCCCCCCCCAAAGGCTCGGGAGGAAACGATGAGCTCTC
CTCATTACATGCCAAAATCAGAAGGCGTAGAAGAGGTAAATTTGTCCGCC
ATTTCGGATACCATGCCGCTCGACCCGGCTTTGTCTTCCTCCGCCTCCAA
GCCCGATCCTACCTCAAGCGCCACCTCGCCTCTCCCCCGAGACCAAGCAC
CAAAAATTCGCACTGCAAGAAGAATGCCTCCCATTGCCCTGCCCTCCTTT
ATTGGTTTGGAGAGCGGACGGCCTGCGGCGGTCCTGTACCCCCCGCACGC
GGCCCTGTCCCCTCCCCTTCCTCTCGTCGTGGTCCTCCATGCCTGGGGCA
GCAACGCCAGCGAACACGCTGCCTACCTCGGGGTGTCCGAGCGTCTCTCT
CGCTTCCAATTTATCGCCCTGCTCCCCAACGGCATTAAAAACAGCAAGGG
CTACCGGTTTTGGAACGCCCCTGCCTGTTGCAACCGGGAGGGCATCGCTG
TGGACGACCTCGGCTACCTGACCGACTTGCTCCAGGAGGCTCGCGACCGC
CTCCCCGTGGATCCAGCCCGCGTTTACCTCACGGGCCACTCCAACGGGGG
CCAAATGGCTCTCTACCTTGCCTGCCGGAGCGGCGGCGAGGGCCATATTC
GGGGCCTGGTGTCCATCGCCGGCTTCGGCCCCCCCCCCGCCTGCCCCGCG
CCTCGACCCTGCTCCGCCCTCTTCATCCACGGAACGGACGATGCCGTGGT
GCCCTTCGACACGAGTCTGCAGGCCTTTGACAAGTGGGTGGAGGGGGAAG
GCTGTCTGGCGGAGTCCCCTCTCTCTACTCCTCCCGCCGCCTCCCTCCCC
TCCTCCGCCATCGGCGCCTCTTCCCCGCCCACTCCCACGGCCTCGTCCCA
GCCCTACTGCCGCCTCAGCAAGCCCAGCGACCCCTCATCCATGTTGAATC
CCTCGGAGTTCCCCGCTCCCATCCTCCCTTTCTCGTCCCCGCACTCGCCA
GCCTCGACCTGTTCCCAGTTCACCCGCGACTTGGACTGCGACCCTTCCTT
CGCGGTCGGCGCCAAGGACCCTCGCCTGAGCTCGTACCGCGACGCAAACT
GCGCATTGAGAGGTGAGGAGACGGTGGTCACTCAGTACGTGGGCTGTGGG
GGTGAAAAAGGCGCGAACGTGAGCTTCTGGCGGATGGAGGGGGCCTCGCA
TGTGCCTGCCTTTAGTCCAGATTCCTTGGACGCCATGCTCTCCTTCTTGC
TGGATATGTAG

Synonyms

Publications