rna9183, rna9183 (mRNA) Nannochloropsis gaditana

Overview
Namerna9183
Unique Namerna9183
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1367
Alignment locationKK037252.1:40313..41205 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100204g8.5774.mrna
Orig protein idgnl|cribi|Naga_100204g8.5774
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:40313..41205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100204g8gene8908Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21522.1cds9153Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9183rna9183-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9183 ID=rna9183|Name=rna9183|organism=Nannochloropsis gaditana|type=mRNA|length=1367bp
TTAATTCTTTTTTTTGCGCCATAGCGTTTTAAACCAAGCTAACATGGTCC
TGGAGCGATTCAAAAGACAGAAGACACATGATTGAGCCTTTGCCTTTGCT
GGCAGTCTCTAAAATGTCTTGTCATCCTTCTCTTGTAGTAACTCTTTCTC
CCCAGGACAAAAACCACGCTCAAGCTCAAACTTTGGTTCATTTCCATGTT
CGGTTACCAGCCCAAAGTGGGCCTCGTAATCAGGTGCCGTGCTCGGAGCT
CGCCCGTCAAAGTAGGCGTAATAGAAGGTCTCAGCCCCTCCCCCCTTTTC
TTCCTCCCCGTCAATTCTCCTTCTCTGCTCACATGCCCATTTGACATACG
TGTGATAATAAGCCTCAGCTTGACCCTGACTAGCCGTAAGATTTGCAAAA
TTAGGACTCCCTACAGGAGAAAAAGAAAGAAGGCAAGAGGAAAGGCACGA
GAAAAAGAAGGCCAACCTGTTTCCGTAACTCGTATCTTTTGCATATGGTT
TGGATAGCGCTTGACCATCTTCTCCCATTGCGCCTCCAGACTTTCGCCAT
CAATGCTGAAATAAGGATACAAATTGACGCCCAAAAGATCGGATGCTTCA
GCAAGACGGTCCATCTCATCTTTTTCCCTCAACCACTCGTGTGCGAAGGG
AATGAGATAGCGCTTTGGACTGCCACTCTTTTTTCGGCTTCCGTCCAGGA
CGGTTCGTCTGGGTACATGAAGACACCCAACACCGCTTTTAAACCTGCCT
GAACAAAATAGGGCATGACCGGGGTCTGGTAATACGCAGAATAGAATGTT
CGGACTTGACGAAAATGGCGTCGAATAAGCAAGGCGTCGGCCAAGATGTC
CGCGGGGCTGCTCATGTTGTGCTTTGGCGCCCAGCACACGCCAAGCGTGA
GGGAGCGTGAGGTAGCAGGAGACGAAAACGGGTCCACGGTTGTAACCTTG
GTAGATGACGATATGGATATGGGATCAAGGGGAGAGGAAGTGATCGGGGG
TGAGGATGAAGAAGAAGAGGAAGCCGAGAAAAGCAAGGCCGAAGTAGAAA
CGGGAGCAGCTGACGAGGCCCTTGCATCAGCGAGCAGCTCTGCGGTCTGT
GTGCTGTCTTTTTGGGCGATCGAAGTGGGACCGGTGAAAATTTTCGAAGA
TGATAAGGCGATGGCAGCGCACGCGGAGGCAAAAAATAGGATGCCCAGAA
AAAGCATTACGGAGCTAAGGGGGGAACGTGAACCTGTGCAAGGGTACAAT
TATCAGAGAACATATCATAAATAAGTGTTCGAACGTCAAGAGGGCTCGTG
AACAAACTGTTTTGCCAAAATTTGATCATATTCTGAAGGATCGATTTGCA
AGTTTGACACGGAGATA
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protein sequence of rna9183

>rna9183-protein ID=rna9183-protein|Name=rna9183|organism=Nannochloropsis gaditana|type=polypeptide|length=172bp
MGARGSKPAGEVMSAAAVQARRQAVAQASRTQEAPSGVTIEGRSPNNQSL
PLPPPSAPPSSIPSERAGNQLEADDTLIRMMNELGPAIKTARLQTPRRDM
NKMMHAHQDKPHTLHEDTLALILRARREAPEKFDIGKVCAQHELKAETLA
KVLEVIEVPRIIERQGQKYGYW
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mRNA from alignment at KK037252.1:40313..41205-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9183 ID=rna9183|Name=rna9183|organism=Nannochloropsis gaditana|type=mRNA|length=893bp|location=Sequence derived from alignment at KK037252.1:40313..41205- (Nannochloropsis gaditana)
GCATCCCTATTCTTTCACCTCACGTAAATTACAGGAGTCGCTTCCTGAAT
CTCAGGCAACCTCCCCAACACGTCACCGTCACGGACATTATCTCCCTCGC
CATCCACAGCAGCGTATAGCGTCGACGATGGGAGCGCGAGGGAGTAAGCC
TGCAGGAGAGGTCATGTCTGCCGCGGCCGTTCAAGCTAGGCGGCAGGCAG
TCGCCCAAGCGTCCCGGACACAAGAAGCTCCTTCGGGAGTAACGATCGAA
GGCAGAAGCCCAAACAACCAGTCCCTCCCCCTTCCCCCCCCTTCTGCCCC
ACCGTCGTCCATCCCATCTGAGCGAGCAGGTAATCAGCTGGAAGCTGACG
ACACTCTCATAAGAATGATGAATGAGTTAGGCCCGGCTATAAAGACTGCC
CGACTCCAGACGCCGCGTCGAGACATGAACAAAATGATGCACGCACATCA
AGATAAACCCCATACACTTCACGAGGACACCTTGGCCCTCATATTACGGG
CTAGGCGCGAGGCTCCAGAAAAATTTGACATTGGGAAGGTGTGCGCTCAG
CATGAGCTGAAAGCAGAGACGCTAGCCAAGGTCTTGGAGGTGATCGAAGT
ACCACGAATAATAGAGAGGCAAGGGCAGAAATATGGCTATTGGTGAGGCA
GACGGCGACGGGGGCATTGATCTGAGCTAAATATTACTTGTACAGGGACG
TGATGGTAGAGTCCTCAAGCGGTCGAGGGGACACGCGGCAGATGCAGAAA
TGGAATAAAAAAAAGAGGAAAGGGATGCACAAGGAACTTTTGGGCTGCGT
TGACCTCCAATGCGATCGAGCCTTCGCCTTGTCTGGACCTAAAATTTTCG
GAAAGAAAATAGTAAATAACGCTGCAAAGCCATTCATGTTGCA
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Coding sequence (CDS) from alignment at KK037252.1:40313..41205-

>rna9183 ID=rna9183|Name=rna9183|organism=Nannochloropsis gaditana|type=CDS|length=519bp|location=Sequence derived from alignment at KK037252.1:40313..41205- (Nannochloropsis gaditana)
ATGGGAGCGCGAGGGAGTAAGCCTGCAGGAGAGGTCATGTCTGCCGCGGC
CGTTCAAGCTAGGCGGCAGGCAGTCGCCCAAGCGTCCCGGACACAAGAAG
CTCCTTCGGGAGTAACGATCGAAGGCAGAAGCCCAAACAACCAGTCCCTC
CCCCTTCCCCCCCCTTCTGCCCCACCGTCGTCCATCCCATCTGAGCGAGC
AGGTAATCAGCTGGAAGCTGACGACACTCTCATAAGAATGATGAATGAGT
TAGGCCCGGCTATAAAGACTGCCCGACTCCAGACGCCGCGTCGAGACATG
AACAAAATGATGCACGCACATCAAGATAAACCCCATACACTTCACGAGGA
CACCTTGGCCCTCATATTACGGGCTAGGCGCGAGGCTCCAGAAAAATTTG
ACATTGGGAAGGTGTGCGCTCAGCATGAGCTGAAAGCAGAGACGCTAGCC
AAGGTCTTGGAGGTGATCGAAGTACCACGAATAATAGAGAGGCAAGGGCA
GAAATATGGCTATTGGTGA
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Synonyms
Publications