rna9180, rna9180 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9180
Unique Name	rna9180
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2185
Alignment location	KK037252.1:29663..31399 -

Link to JBrowse

Properties


Property Name	Value
Product	carbohydrate fggy
Orig transcript id	gnl\|cribi\|Naga_100204g4.5775.mrna
Orig protein id	gnl\|cribi\|Naga_100204g4.5775
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:29663..31399 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100204g4	gene8905	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21523.1	cds9150	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9180	rna9180-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:29663..31399-
coding sequence from alignment at KK037252.1:29663..31399-

mRNA sequence

>rna9180 ID=rna9180|Name=rna9180|organism=Nannochloropsis gaditana|type=mRNA|length=2185bp
GACAGCGCCTTACCCACCAAAATTTGACCATTGGAGAAGGAAGACAACAA
GCGTTCTTGAATCCTTCCACGAGAGGAAATGCCATTCCATTTAAAGACCA
CACATTCCGTGTCCTTTTGTCGTTTGGCTCGAACTATCTTTATCGTCTTG
TTGGCATGTAAGCCGATCGCGGGAGCTCGCAATCGAAGTTCCCGACGTCA
GGCTTTGCACAAGGCACTCTCGGGTGGGCCTCGTGAGCCACGACACAAAA
TACTTGGCAAGCGATACCGTAAGGAGCTTAATAAAGAGCAAGAAGGGTAT
GGACTACTGAGTCTCGAAAATGTGGAAAACAGGGCTATGTTGATTATTCC
AGAGCCTTTAACCGATGACGCTCCTCCGCCTCCTCCGGAAGGTGACGCAG
ATGACGACAACGATGGGGACGAAGGAAGGTTATCAAGTGCTCCGAGTATA
TCGGCAGGGAGGAATAAAGACGTCTCATCCTCTACTATAGAGCTGGCTCA
AGACAAGGAGGAGGAGCCTGATTCACTCCCTGAGAACGAGTCCAACGATA
AGGGTATCTTGAAGGAGAAAACGGCCGCCCCTGGACGTGATGAACGACGT
AAGGGGGACACAAGGAGGAGAAGCACATTAATTGTTCCAGAGCCCTTGAC
AGATGACGCTCCTCCGCCTCCTCCGGAAGGTGACACGGATGATGACAATA
ATGGGGACGGGGGAAGATTTTTCAGTGCAGCAAGTACATCGCGACGTGGG
GAGCAAGCGGAAGATACAGAGAACAACGCCAGCAACATCACATCCTCTAT
TCTCATCACCCCTTCGTCGCAGTCGAACAAGAGTTCAAATGGTGATGACG
GAGACATTCATAATCTCCCTCCCATAGTGATTCCTGTTCCAGACTATATT
TTAAACACCGGCAAAGGCCCTCTGGTCACAGATAGGGGGGACATTAATGA
CGAAAACCGCGTGGTCAAATTGCAAGGAGAGAGTGCCGCGTCATCGATCA
AACAGCGGGAAGGTGAGGATCGCCAGAAAACAATCCAACAGGAGAGAAAA
ATAAAGGATGCAGACGATGAGGAGATGGACGACCAGGAGGGATGGGACGA
GGTGGAAAGCGACATGGATGGCAGCGCGGGCGAGAAATTGGTCAGCGCGG
ACTCGGCGATCACCAATGAAGGCAGGATAAGCAAGCTTGCCAATATTAGT
GCCTTTTTCCTATTCGGTGGTTTGCTCCTGATACTTGCTTACCACCTCTC
TCGACGGTTTAGGCCCTCCCCTGACGTAACTGCCCTCGACACGCAACCAC
AGCTCAACATGGCCTCTCCTCGCATCACTTTTGCCTCGGTGGCGCAGTCG
ACCAGCGGGACCCAAGCAGCCCCCCCTGTCTTCCATTTGGCACCCACGTA
TACCAAGAGAGCAAGCGAACGCCAGGGAGGCGGTCGAAGCCGGTCTTCTT
CCTTTACCTTGTCATCGCCGCCCTCCGCCTCGACCACAGGAGCTTCCGCC
TCCCCGTCGTACCAGCAGGGACGGCGCGGTAGCAGCACAAATCCTTTGCG
GTTACAGCACTTGAACCACCACAATCTGGCCCAGGGACCTCCCTCCTCGG
CTCTCCATCGGAATTTATCCCCAGACCAGGAAGTGGACATATCAGGACAA
GGAGCAGCGGAGGTGCGAGGTATGAGTATATACAGGGAGGCCCCCTGCTC
TGCTTGCGGTCTTCAGCCCAGGACGCACGCGCTGGTGCCTTGTTCTCATC
TGGTGTGTGAATCCTGTGCGTCCACCGCGTCCTTTTGCGTCACGTGTAAG
AGTGCAGTGGTGAGTCGAAACTGGGTCATGAGCCCCTCCCGCTAGCCGAG
GACGATGGAGAGGGAAGACCATGCGGCGCAAGTGCAGGCATGTGTCTTTT
GGTCTTATACAATTCAGCGTTTCAGCTCATGCGCGGTTTGTCGTCGTAAC
TAAGGCACTTACATTGAAGGTCCATCAGACTTCGATAAATGGCCCGAAGT
AGAGCAGGAATGCCTTGTAGTGTGTGTATGTATACATGTCGGTAAAGTCT
GAGTGGTCTAAGAAACGGTTAGGCTATCCCAAAGTCAAAAATAGGCCCGG
AAGAAGAAATAATGCGTATTAGATGTGATGGTGGTGTGTTGCGAAGTACA
CATATTACTTGATTTCTTCATAAAGCATTCTCAGA

protein sequence of rna9180

>rna9180-protein ID=rna9180-protein|Name=rna9180|organism=Nannochloropsis gaditana|type=polypeptide|length=495bp
MCPQGAMSFLSWCWFLIFMVSFSSLLWAFPSSGSKPRCGAGFDFGTSGVR
LVVLEASETPTCVHQASFRWPHSQTVQDAEEWRLAMFRLLDDIPPAIRSR
MARVAISGTSASCVVVNKANGAITRNPRLYNWDALREIPETGRKAQCLIA
DYAPAKHVTLSGTSSLMKVVSWHLEEAFHRDEVMLHQADFLSACLIHDTS
TAKREQSCFPRVSDWNNMLKLGYDMSALAYPGWFSPLLDDRLGLGCPSPS
ESSPSTYRDVLPTHVIEPGQPNGCVSPSLVQSHGFPSDCTVVGGTTDSVA
AFIAAGLQEPGQAVTSLGSTLAIKMLSNKAVEDATRGVYSHRLGNQWLVG
GASNVGCAVLRQEGFSNPELERLSQEIDPRRPCRHLNYYPLAGDAGERFP
SCDPSKKALLTPRPPRRSEYLQGILEGIARVERDGYQILKDLGADELVEV
RTAGGGARNKVWTRIRRQLLGVPTGKASETEASYGAALLALKTVL

mRNA from alignment at KK037252.1:29663..31399-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9180 ID=rna9180|Name=rna9180|organism=Nannochloropsis gaditana|type=mRNA|length=1737bp|location=Sequence derived from alignment at KK037252.1:29663..31399- (Nannochloropsis gaditana)
CCATTTTCTTCCCATGTGCCCACAGGGCGCGATGTCTTTCCTGTCGTGGT
GCTGGTTTTTGATCTTCATGGTCTCGTTTTCTTCTTTGCTCTGGGCATTT
CCATCTTCAGGGAGCAAACCCCGCTGCGGTGCAGGTTTTGACTTCGGTAC
GAGCGGCGTTCGATTAGTCGTCCTCGAGGCCTCTGAGACTCCTACTTGCG
TTCATCAGGCCTCCTTCCGATGGCCCCATTCTCAAACTGTGCAAGATGCC
GAGGAATGGCGCCTGGCGATGTTTAGACTTCTAGATGACATACCCCCTGC
AATACGATCCCGGATGGCCCGCGTAGCAATCAGCGGCACCAGCGCCTCAT
GCGTGGTTGTGAATAAAGCGAATGGAGCAATCACTCGGAATCCAAGGCTC
TACAATTGGGATGCCCTCCGCGAGATACCAGAAACAGGTAGAAAGGCACA
ATGTCTGATAGCAGATTATGCACCAGCCAAGCATGTCACCCTATCCGGGA
CATCTTCATTGATGAAAGTAGTGTCCTGGCATTTGGAGGAGGCATTCCAT
CGCGACGAAGTGATGCTGCACCAAGCCGATTTTCTTAGCGCCTGTCTGAT
ACACGATACCTCAACAGCAAAGAGAGAGCAGTCTTGTTTTCCCCGCGTCT
CAGACTGGAACAATATGCTAAAATTGGGCTACGACATGTCTGCCCTTGCT
TATCCTGGCTGGTTCTCCCCCCTCCTCGACGATCGCCTCGGTCTGGGCTG
CCCCTCTCCCTCCGAGTCCTCCCCCTCTACATACCGAGATGTCCTTCCGA
CGCACGTCATCGAGCCTGGTCAACCTAATGGCTGTGTGTCCCCCTCTTTG
GTGCAATCGCACGGCTTTCCAAGTGACTGCACTGTCGTCGGCGGCACCAC
CGACAGCGTCGCCGCTTTCATCGCAGCCGGTCTCCAGGAACCCGGACAGG
CCGTCACGAGCCTTGGTTCCACTTTGGCCATCAAAATGCTCAGCAACAAG
GCAGTCGAGGATGCAACTCGGGGCGTCTACAGCCATCGACTCGGGAATCA
GTGGTTGGTGGGGGGTGCGAGCAATGTAGGTTGCGCCGTGCTCAGACAAG
AAGGATTTTCCAATCCCGAGCTTGAGAGACTAAGCCAGGAGATCGATCCA
CGGAGACCTTGCCGGCACCTCAATTACTACCCCTTGGCGGGCGATGCGGG
GGAGCGGTTTCCCTCGTGCGACCCAAGCAAAAAAGCGCTACTGACGCCTC
GTCCTCCCAGGCGCAGCGAATATTTACAGGGGATATTGGAGGGAATTGCG
CGGGTAGAGAGAGACGGATATCAGATTTTGAAAGACCTGGGGGCAGACGA
GCTTGTGGAAGTAAGGACAGCAGGAGGGGGAGCCAGAAACAAGGTGTGGA
CACGAATAAGGAGGCAATTGTTGGGAGTACCAACAGGAAAGGCGAGCGAG
ACAGAAGCGTCCTATGGTGCCGCCTTGCTTGCTTTAAAGACGGTTTTATG
ACTTTTGGAGCTAATGGGACTCCAAATCTGAACAAGAATTGCTTGCAAAT
GATAATATTTTCACTCCAGCTGCATTTTGAGGAAAAGTGAGTGTAAAAAG
CTGTACAGTGGAAGGATTCTATGTATGTTCTGTGAAGAACACAGAAATTT
CAGCAAGGAAATTATTTTCGCTCAAGATCAGGTCTCTTTGCCTCGAATTT
GTATCTTTGAATACATAAAGTCCTACTGAGTTTTGTA

Coding sequence (CDS) from alignment at KK037252.1:29663..31399-

>rna9180 ID=rna9180|Name=rna9180|organism=Nannochloropsis gaditana|type=CDS|length=1488bp|location=Sequence derived from alignment at KK037252.1:29663..31399- (Nannochloropsis gaditana)
ATGTGCCCACAGGGCGCGATGTCTTTCCTGTCGTGGTGCTGGTTTTTGAT
CTTCATGGTCTCGTTTTCTTCTTTGCTCTGGGCATTTCCATCTTCAGGGA
GCAAACCCCGCTGCGGTGCAGGTTTTGACTTCGGTACGAGCGGCGTTCGA
TTAGTCGTCCTCGAGGCCTCTGAGACTCCTACTTGCGTTCATCAGGCCTC
CTTCCGATGGCCCCATTCTCAAACTGTGCAAGATGCCGAGGAATGGCGCC
TGGCGATGTTTAGACTTCTAGATGACATACCCCCTGCAATACGATCCCGG
ATGGCCCGCGTAGCAATCAGCGGCACCAGCGCCTCATGCGTGGTTGTGAA
TAAAGCGAATGGAGCAATCACTCGGAATCCAAGGCTCTACAATTGGGATG
CCCTCCGCGAGATACCAGAAACAGGTAGAAAGGCACAATGTCTGATAGCA
GATTATGCACCAGCCAAGCATGTCACCCTATCCGGGACATCTTCATTGAT
GAAAGTAGTGTCCTGGCATTTGGAGGAGGCATTCCATCGCGACGAAGTGA
TGCTGCACCAAGCCGATTTTCTTAGCGCCTGTCTGATACACGATACCTCA
ACAGCAAAGAGAGAGCAGTCTTGTTTTCCCCGCGTCTCAGACTGGAACAA
TATGCTAAAATTGGGCTACGACATGTCTGCCCTTGCTTATCCTGGCTGGT
TCTCCCCCCTCCTCGACGATCGCCTCGGTCTGGGCTGCCCCTCTCCCTCC
GAGTCCTCCCCCTCTACATACCGAGATGTCCTTCCGACGCACGTCATCGA
GCCTGGTCAACCTAATGGCTGTGTGTCCCCCTCTTTGGTGCAATCGCACG
GCTTTCCAAGTGACTGCACTGTCGTCGGCGGCACCACCGACAGCGTCGCC
GCTTTCATCGCAGCCGGTCTCCAGGAACCCGGACAGGCCGTCACGAGCCT
TGGTTCCACTTTGGCCATCAAAATGCTCAGCAACAAGGCAGTCGAGGATG
CAACTCGGGGCGTCTACAGCCATCGACTCGGGAATCAGTGGTTGGTGGGG
GGTGCGAGCAATGTAGGTTGCGCCGTGCTCAGACAAGAAGGATTTTCCAA
TCCCGAGCTTGAGAGACTAAGCCAGGAGATCGATCCACGGAGACCTTGCC
GGCACCTCAATTACTACCCCTTGGCGGGCGATGCGGGGGAGCGGTTTCCC
TCGTGCGACCCAAGCAAAAAAGCGCTACTGACGCCTCGTCCTCCCAGGCG
CAGCGAATATTTACAGGGGATATTGGAGGGAATTGCGCGGGTAGAGAGAG
ACGGATATCAGATTTTGAAAGACCTGGGGGCAGACGAGCTTGTGGAAGTA
AGGACAGCAGGAGGGGGAGCCAGAAACAAGGTGTGGACACGAATAAGGAG
GCAATTGTTGGGAGTACCAACAGGAAAGGCGAGCGAGACAGAAGCGTCCT
ATGGTGCCGCCTTGCTTGCTTTAAAGACGGTTTTATGA

Synonyms

Publications