rna9175, rna9175 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9175
Unique Name	rna9175
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1080
Alignment location	KK037252.1:14671..15025 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101266g2.2351.mrna
Orig protein id	gnl\|cribi\|Naga_101266g2.2351
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:14671..15025 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101266g2	gene8900	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9175	rna9175-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21527.1	cds9145	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:14671..15025-
coding sequence from alignment at KK037252.1:14671..15025-

mRNA sequence

>rna9175 ID=rna9175|Name=rna9175|organism=Nannochloropsis gaditana|type=mRNA|length=1080bp
TGTCCACACCTTTTGCCTCGATCCGCCCATTACCTCCTCAGTGTACAATA
TGAATGCATGGTACACCCACAACAAGTCCATCAGACTTCCCCCAAAGCAG
CCTTCCTCTAGACACAGGATTGAGCATGCCCTTTATTCCATCCAAGCACA
CGTCACCGCCAAGGGCCCCCAAGTGGAACAAGATGCTTCCATCAAAGACG
TCCACAACATCCCCTACAGACCCCGACCCCGTGGAGATGGGCGAACATAA
TGGTCAAACAGATACATTATTTGGACCTTTCTGGTATGAAAGGCTGAGGG
GATTGCTGTGTTGCATCCTCAGTTCCAACGAGGTACCAGAGTCCTCGACG
GCGTCGATCCTGACGATCGCTCTTGAAAGCCAGTCCTGCGAAAAGACACC
GCCAAGAAAGGTCGGCAACCAGTCTTGGGACCAGACGAGGGACGCTATCG
TGCTCGTGTTCCCATCACGGCATGTTTCTCAGCGTGCAGCTGTTCGCTCG
CGCTCAGATATTTTTAAGACGGCTTTATTCCTTTCGGAGGCATGCGAATG
GATTCTCTTGGGACGTCCGATCTACGAGACTCCTCGATCTCCACATGCCT
TTGATCGCGGCCCATGATTAAAAACAAACTCAACGAAAACTTCACGCGTC
GACTGATGCCCCATATTCTTTGGATGCGCGGGTGGGAGGCATGAAGACAA
GTGACATGTGTACAATTGGATTTGTTTCTTGCTTTTAGAAAGATGCGCCG
TCAAATGCGTGGTACAATATGACCTGCCATGTCCTGCATGAAAAACTTCA
TTGGTCTTCACCTACAGCGTATGGTTTGTGCAATTTTAAAATGGGCCGAT
TTGCACTATAAATTTTGTAAATAATCAAGATAGCGGCGCTGGTGTGTCCT
CGGGGAGCTTGATGGTGTCAGCTCAGACAATACACCTTCGCCCCGGGTGG
CAAAGTATGTACGACGTCATCATCATATTCCTTGTCATCATCATATTCCT
TTCCCCCCAGAGTGGGGAGATTCATAGTTGCCCCTCGATCCAAGGATTCG
ACATCTTCACAACGTTTGAGTCTTGGGACA

protein sequence of rna9175

>rna9175-protein ID=rna9175-protein|Name=rna9175|organism=Nannochloropsis gaditana|type=polypeptide|length=88bp
MRLLCEEVGPKRSIGQASGQKPGNACCRAYKLVQQPPTSMSQGMFTNMHY
AFLSDKGKRRHHEYDDDKEYDDDVVHTLPPGAKVYCLS

mRNA from alignment at KK037252.1:14671..15025-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9175 ID=rna9175|Name=rna9175|organism=Nannochloropsis gaditana|type=mRNA|length=355bp|location=Sequence derived from alignment at KK037252.1:14671..15025- (Nannochloropsis gaditana)
ATGCGTTTGCTTTGCGAAGAGGTCGGTCCGAAGAGGTCTATCGGACAAGC
CTCAGGACAAAAACCCGGAAATGCGTGTTGCAGGGCCTATAAGCTCGTAC
AACAACCTCCTACCTCGATGAGCCAAGGCATGTTTACTAACATGCACTAT
GCCTTTCTCTCTGATAAGGGAAAGCGAAGACACCATGTAAGATGTCCCAA
GACTCAAACGTTGTGAAGATGTCGAATCCTTGGATCGAGGGGCAACTATG
AATCTCCCCACTCTGGGGGGAAAGGAATATGATGATGACAAGGAATATGA
TGATGACGTCGTACATACTTTGCCACCCGGGGCGAAGGTGTATTGTCTGA
GCTGA

Coding sequence (CDS) from alignment at KK037252.1:14671..15025-

>rna9175 ID=rna9175|Name=rna9175|organism=Nannochloropsis gaditana|type=CDS|length=534bp|location=Sequence derived from alignment at KK037252.1:14671..15025- (Nannochloropsis gaditana)
GAATATGATGATGACAAGGAATATGATGATGACGTCGTACATACTTTGCC
ACCCGGGGCGAAGGTGTATTGTCTGAGCTGAATGCGTTTGCTTTGCGAAG
AGGTCGGTCCGAAGAGGTCTATCGGACAAGCCTCAGGACAAAAACCCGGA
AATGCGTGTTGCAGGGCCTATAAGCTCGTACAACAACCTCCTACCTCGAT
GAGCCAAGGCATGTTTACTAACATGCACTATGCCTTTCTCTCTGATAAGG
GAAAGCGAAGACACCATGAATATGATGATGACAAGGAATATGATGATGAC
GTCGTACATACTTTGCCACCCGGGGCGAAGGTGTATTGTCTGAGCTGAAT
GCGTTTGCTTTGCGAAGAGGTCGGTCCGAAGAGGTCTATCGGACAAGCCT
CAGGACAAAAACCCGGAAATGCGTGTTGCAGGGCCTATAAGCTCGTACAA
CAACCTCCTACCTCGATGAGCCAAGGCATGTTTACTAACATGCACTATGC
CTTTCTCTCTGATAAGGGAAAGCGAAGACACCAT

Synonyms

Publications