rna9167, rna9167 (mRNA) Nannochloropsis gaditana

Overview
Namerna9167
Unique Namerna9167
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length243
Alignment locationKK037251.1:475661..475980 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101422g1.5165.mrna
Orig protein idgnl|cribi|Naga_101422g1.5165
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:475661..475980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101422g1gene8892Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9167rna9167-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21535.1cds9137Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9167 ID=rna9167|Name=rna9167|organism=Nannochloropsis gaditana|type=mRNA|length=243bp
ATGCAACAGGAAGGCTTGACATGCCGCCCCGACCACGCGCAAATTTTGAT
GAGCTTCTACAACCAAATGGCGAAATACTCGGTCTCCCTCCTTGTCTTCC
AGGCGCTGGAGCCGGGGGAGGGCGGGAATAAGGACCCAGCCGTGGCCCGG
CTCGCGCTGGAGGCCTGTGGGCGGAGCGGGCTGTGGGAAGATGGGGAGGA
GATCGTGAGGGATATGGAGTGGTCGCGGGAGGACAAGGAGTGA
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protein sequence of rna9167

>rna9167-protein ID=rna9167-protein|Name=rna9167|organism=Nannochloropsis gaditana|type=polypeptide|length=96bp
MVTLAESGRPGWEMEAVSLFSRQNPPTAEGFRVALRGLYRAGRHAEALRL
LATVGATCNVDPDDGLLKAGMKAAMGLGEEEALPLLRAALTEAGGA
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mRNA from alignment at KK037251.1:475661..475980+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9167 ID=rna9167|Name=rna9167|organism=Nannochloropsis gaditana|type=mRNA|length=320bp|location=Sequence derived from alignment at KK037251.1:475661..475980+ (Nannochloropsis gaditana)
CGCCGTCCCCGGCCTCCTACGAACTGGTCATGGTCACCTTAGCAGAGAGT
GGGCGGCCGGggtgggagatggaggcagTCTCCCTGTTTTCCCGCCAAAA
TCCTCCCACGGCGGAAGGGTTCCGGGTCGCCTTGCGTGGACTCTACCGGG
CAGGTCGGCACGCGGAGGCCCTGCGTCTCTTGGCGACCGTGGGTGCCACC
TGTAATGTGGACCCAGACGACGGTTTGTTGAAGGCGGGTATGAAGGCAGC
GATGGgtctgggggaggaggaagcgctgcCGCTCTTGCGGGCCGCGctga
cggaggcgggaggggcgtga
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Coding sequence (CDS) from alignment at KK037251.1:475661..475980+

>rna9167 ID=rna9167|Name=rna9167|organism=Nannochloropsis gaditana|type=CDS|length=291bp|location=Sequence derived from alignment at KK037251.1:475661..475980+ (Nannochloropsis gaditana)
ATGGTCACCTTAGCAGAGAGTGGGCGGCCGGggtgggagatggaggcagT
CTCCCTGTTTTCCCGCCAAAATCCTCCCACGGCGGAAGGGTTCCGGGTCG
CCTTGCGTGGACTCTACCGGGCAGGTCGGCACGCGGAGGCCCTGCGTCTC
TTGGCGACCGTGGGTGCCACCTGTAATGTGGACCCAGACGACGGTTTGTT
GAAGGCGGGTATGAAGGCAGCGATGGgtctgggggaggaggaagcgctgc
CGCTCTTGCGGGCCGCGctgacggaggcgggaggggcgtga
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Synonyms
Publications