rna9166, rna9166 (mRNA) Nannochloropsis gaditana

Overview
Namerna9166
Unique Namerna9166
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length513
Alignment locationKK037251.1:475137..475446 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103444g1.2222.mrna
Orig protein idgnl|cribi|Naga_103444g1.2222
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:475137..475446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103444g1gene8891Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9166rna9166-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21537.1cds9136Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9166 ID=rna9166|Name=rna9166|organism=Nannochloropsis gaditana|type=mRNA|length=513bp
ATGACGATCTGCATCCACGCCCAACGTCCCAAAGAAACGGTCGCGATCTT
GGACCGGATGGGCAAGGCAGGCGTGCCCGTGGGCTTGTCCTCCTACAATC
TGGCCGTGGAAGCCCTCGCCCACCAAGGGGAATGGAAGAAAGCTTTGAAA
ATCATCACCTACATGGAACGGCAAGCCGTCTGGCCGGATACCCGGACGTA
CACGAGTGCCTTGGACGCCTGTGCCCGGGCTGGGGAGTGGCAACGCGCCC
TCCTCCTCTTGGAGGAGATGGTGACGGTCAAGGGTGTACCCCCTGCGATC
GGGTCGTACAACGCCGTGCTCTCGGCCTGCGTCAAGGGGGGGCAATCCGC
CCGCGCCACCACCTTCTTCCAGGACATGGTCAAGAAAGAGGTGGGGGTGG
ACGCCCGGTCCTTTGCGGTGGCGATTGCTGCCTGCGAAGATGGGAACTTG
GTGGACCAGGCACTGGCCTTGGAGGGTCGGGGACGCGATCCGCCTCTGCC
ACGAGGAGGCTGA
back to top

protein sequence of rna9166

>rna9166-protein ID=rna9166-protein|Name=rna9166|organism=Nannochloropsis gaditana|type=polypeptide|length=80bp
MQQEGLTCRPDHAQILMSFYNQMAKYSVSLLVFQALEPGEGGNKDPAVAR
LALEACGRSGLWEDGEEIVRDMEWSREDKE
back to top

mRNA from alignment at KK037251.1:475137..475446+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9166 ID=rna9166|Name=rna9166|organism=Nannochloropsis gaditana|type=mRNA|length=310bp|location=Sequence derived from alignment at KK037251.1:475137..475446+ (Nannochloropsis gaditana)
ATGCAACAGGAAGGCTTGACATGCCGCCCCGACCACGCGCAAATTTTGAT
GAGCTTCTACAACCAAATGGCGAAATACtcggtctccctccttgtcttcc
aggCGCTggagccgggggagggcgggaataAGGACCCAGCCGTGGCCCGG
CTCGCGCTGGAGGCCTGTGGGCGGAGCGGGCTGtgggaagatggggagga
gatcgTGAGGGATATGGAGTGGTCgcgggaggacaaggaggtgcGGGGCT
GGCTGTTGGAAGCAAAGGCGCGCGCGGGGAaccaggtggaggacgtggct
gGGGCAGTGA
back to top

Coding sequence (CDS) from alignment at KK037251.1:475137..475446+

>rna9166 ID=rna9166|Name=rna9166|organism=Nannochloropsis gaditana|type=CDS|length=486bp|location=Sequence derived from alignment at KK037251.1:475137..475446+ (Nannochloropsis gaditana)
ATGCAACAGGAAGGCTTGACATGCCGCCCCGACCACGCGCAAATTTTGAT
GAGCTTCTACAACCAAATGGCGAAATACtcggtctccctccttgtcttcc
aggCGCTggagccgggggagggcgggaataAGGACCCAGCCGTGGCCCGG
CTCGCGCTGGAGGCCTGTGGGCGGAGCGGGCTGtgggaagatggggagga
gatcgTGAGGGATATGGAGTGGTCgcgggaggacaaggagTGAATGCAAC
AGGAAGGCTTGACATGCCGCCCCGACCACGCGCAAATTTTGATGAGCTTC
TACAACCAAATGGCGAAATACtcggtctccctccttgtcttccaggCGCT
ggagccgggggagggcgggaataAGGACCCAGCCGTGGCCCGGCTCGCGC
TGGAGGCCTGTGGGCGGAGCGGGCTGtgggaagatggggaggagatcgTG
AGGGATATGGAGTGGTCgcgggaggacaaggagTGA
back to top
Synonyms
Publications