rna9165, rna9165 (mRNA) Nannochloropsis gaditana

Overview
Namerna9165
Unique Namerna9165
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length453
Alignment locationKK037251.1:474067..474881 +

Link to JBrowse

Properties
Property NameValue
Producttpr-like protein
Orig transcript idgnl|cribi|Naga_102167g1.8933.mrna
Orig protein idgnl|cribi|Naga_102167g1.8933
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:474067..474881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102167g1gene8890Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9165rna9165-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21538.1cds9135Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9165 ID=rna9165|Name=rna9165|organism=Nannochloropsis gaditana|type=mRNA|length=453bp
CACATGACAGAGCCAACCAAGATGGGGCGAATAAGAGGACACGTCTCTTT
CCTGCTTCCTCTGCTTCTTCTTCTGCCAGTGGCTCGTGCATTTTTGGGAA
GGGGGCTCACGCCGGCACGCGCATCGATTCCCCTGGGAGGTGGTTGCAAT
GCGCGCCAGGCTTCTGCGGTGTCGCCTGCCTACGCCATGTCTGCCAACGT
CATGGAGAGGCCGCGGTCCCCAGAAACGGACAGTAAAGAGAACAAAAAGG
TCTTCGAGCGACTTTTTGTGGAACTAAGCAAGTCACCGTCGGAGATTCCC
CCCCAGGCTCTCGACGAGGCCCTCGCCCTGGCAGCTCGGGGCCGAAGTTG
GAGCCGGGCCATGAAATTGTTGCGTTTGCCCACGGCGCGCCCCACCAGCG
AGCAATACCACATGGCCATCGTCGCCTGCAAGCGGGCCCAGCACAAATGG
TGA
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protein sequence of rna9165

>rna9165-protein ID=rna9165-protein|Name=rna9165|organism=Nannochloropsis gaditana|type=polypeptide|length=170bp
MTICIHAQRPKETVAILDRMGKAGVPVGLSSYNLAVEALAHQGEWKKALK
IITYMERQAVWPDTRTYTSALDACARAGEWQRALLLLEEMVTVKGVPPAI
GSYNAVLSACVKGGQSARATTFFQDMVKKEVGVDARSFAVAIAACEDGNL
VDQALALEGRGRDPPLPRGG
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mRNA from alignment at KK037251.1:474067..474881+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9165 ID=rna9165|Name=rna9165|organism=Nannochloropsis gaditana|type=mRNA|length=815bp|location=Sequence derived from alignment at KK037251.1:474067..474881+ (Nannochloropsis gaditana)
ATGACGATCTGCATCCACGCCCAACGTCCCAAAGAAACGGTCGCGATCTT
GGACCGGATGGGCAAGGCAGGCGTGCCCGTGGGCTTGTCCTCCTACAATC
TGGCCGTGGaagccctcgcccaccaagGGGAATGGAAGAAAGCTTTGAAA
ATCATCACCTACATGGAACGGCAAGCCGTCTGGCCGGATACCCGGACGTA
CACGAGTGCCTTGGACGCCTGTGCCCGGGCTGGGGAGTGGCaacgcgccc
tcctcctcttggaggagatggtgacgGTCAAGGGTGTACCCCCTGCGATC
GGGTCGTACAACGCCGTGCTCTCGGCCTGCGTCAAGGGGGGGCAAtccgc
ccgcgccaccaccttcttccaGGACATGGTCAAGAaagaggtgggggtgg
aCGCCCGGTCCTTTGCGGTGGCGATTGCTGCCTGCGAAGATGGGAACTTG
GTGGACCAGGCACTGGccttgtgggaggaggaaatgccccagcaatccct
ccctccctccctccctcccctccttgccctcttccgcgtcctcctcaaaG
CGGACCGCTGGACGTCCATCCAAGCGATCAtcgacgccctccctccctcc
ctccctcccttcctccctccctcggccccggCGCTGACGCAAGCGGACGC
AGCGTTGGCCCTGGTCAAGGCAGCGaagcgggggcagggaggggtggagg
gagggagggagggagggagggagggagggagggaacgcgGGTTGTACGTG
GTCGAGAAGCTGCTGGCTGCAGGGAGGGTCGGGGACGCGATCCGCCTCTG
CCACGAGGAGGCTGA
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Coding sequence (CDS) from alignment at KK037251.1:474067..474881+

>rna9165 ID=rna9165|Name=rna9165|organism=Nannochloropsis gaditana|type=CDS|length=1026bp|location=Sequence derived from alignment at KK037251.1:474067..474881+ (Nannochloropsis gaditana)
ATGACGATCTGCATCCACGCCCAACGTCCCAAAGAAACGGTCGCGATCTT
GGACCGGATGGGCAAGGCAGGCGTGCCCGTGGGCTTGTCCTCCTACAATC
TGGCCGTGGaagccctcgcccaccaagGGGAATGGAAGAAAGCTTTGAAA
ATCATCACCTACATGGAACGGCAAGCCGTCTGGCCGGATACCCGGACGTA
CACGAGTGCCTTGGACGCCTGTGCCCGGGCTGGGGAGTGGCaacgcgccc
tcctcctcttggaggagatggtgacgGTCAAGGGTGTACCCCCTGCGATC
GGGTCGTACAACGCCGTGCTCTCGGCCTGCGTCAAGGGGGGGCAAtccgc
ccgcgccaccaccttcttccaGGACATGGTCAAGAaagaggtgggggtgg
aCGCCCGGTCCTTTGCGGTGGCGATTGCTGCCTGCGAAGATGGGAACTTG
GTGGACCAGGCACTGGccttGGAGGGTCGGGGACGCGATCCGCCTCTGCC
ACGAGGAGGCTGAATGACGATCTGCATCCACGCCCAACGTCCCAAAGAAA
CGGTCGCGATCTTGGACCGGATGGGCAAGGCAGGCGTGCCCGTGGGCTTG
TCCTCCTACAATCTGGCCGTGGaagccctcgcccaccaagGGGAATGGAA
GAAAGCTTTGAAAATCATCACCTACATGGAACGGCAAGCCGTCTGGCCGG
ATACCCGGACGTACACGAGTGCCTTGGACGCCTGTGCCCGGGCTGGGGAG
TGGCaacgcgccctcctcctcttggaggagatggtgacgGTCAAGGGTGT
ACCCCCTGCGATCGGGTCGTACAACGCCGTGCTCTCGGCCTGCGTCAAGG
GGGGGCAAtccgcccgcgccaccaccttcttccaGGACATGGTCAAGAaa
gaggtgggggtggaCGCCCGGTCCTTTGCGGTGGCGATTGCTGCCTGCGA
AGATGGGAACTTGGTGGACCAGGCACTGGccttGGAGGGTCGGGGACGCG
ATCCGCCTCTGCCACGAGGAGGCTGA
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Synonyms
Publications