rna9162, rna9162 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9162
Unique Name	rna9162
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	436
Alignment location	KK037251.1:465045..467103 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100798g2.5010.mrna
Orig protein id	gnl\|cribi\|Naga_100798g2.5010
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:465045..467103 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100798g2	gene8887	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21542.1	cds9132	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9162	rna9162-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:465045..467103-
coding sequence from alignment at KK037251.1:465045..467103-

mRNA sequence

>rna9162 ID=rna9162|Name=rna9162|organism=Nannochloropsis gaditana|type=mRNA|length=436bp
GGAGGCAGATTCCAGAGGTGCGAAGGGGGGGGGAGGGAAAGGTTGGGCAC
AGAAACATGCGTTGTAAAGAAGGAAGATCGAATCACGCCTTTCGGGTCTC
ATGTTGAGAATCGAGCTTTTTCGACGCCTCCTGACCGCAATTTGGACGTG
GCACAGGCGGCCGATAGGGCGGGCGGCGGGCAAGGCCCCGTTGTAAGAGG
GGAAGAGGGCAGAGTAATGTATTCACCGCCCAGCCAGGGGGGAGGGATGG
GGGGGGGAGGGGGAATGAGGGAGGGCGAGAAGAAACGAGGCCGTTGGTCG
GGGGGGAGGAGGGAGGATCACCTCCCCGGGGAGCATCAGCAGCGGGGGGA
CTACAATTTCAGCAAGCGGGGGCGGCGCTAGGCGCGAAGAGGGGGGAAGA
CAGGGTGTATTAAACCGGGCAGAAGAATAAGAACCT

protein sequence of rna9162

>rna9162-protein ID=rna9162-protein|Name=rna9162|organism=Nannochloropsis gaditana|type=polypeptide|length=116bp
MLSRWQSLSFTCRWSWKWLACFFPPLGSQRAWTCAFPGSYEAETKCTRRK
VKMPVSIQPCNQDTGMVLVCDAEMVAYEGKTRKLRCSVCPISRLWAKKAR
ESPGSLQEDGRFLYSL

mRNA from alignment at KK037251.1:465045..467103-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9162 ID=rna9162|Name=rna9162|organism=Nannochloropsis gaditana|type=mRNA|length=2059bp|location=Sequence derived from alignment at KK037251.1:465045..467103- (Nannochloropsis gaditana)
TCAAGCAGCAAATCCCGCCGTACCCCCCCTTGTCTCTTGCTGCCCCCTGC
ACGCTACGAGTACATTTTAGCGAGATAGCAAGGGCACTAAGGCATGATAG
ACACATATCCACGGCAAATTTCAAAGAATAGGGCTGGTTCTTGAGGTCAG
ACTCGCCTGTTTTCGTTCTCGATCGTTACGAGGATGCCAAAGAAAGCCGA
GCACACCACAGGCGTGCTGTGTTGGGAAAAGACGCCGTTCTGTTGTGTTG
GTCGCGTGTGCATTCAAGCCATGCTCACTCGATAGAGCGAACTATCTAGT
GATGCTCTCTCGATGGCAAAGCCTTTCTTTTACATGTCGATGGTCGTGGA
AATGGCTGGCTTGTTTCTTCCCCCCCTTAGGTTCTCAACGGGCTTGGACG
TGTGCGTTCCCTGGCAGTTACGAGGCGGAAACGAAGTGCACGAGACGCAA
AGTAAAAATGCCTGTGTCGATTCAACCCTGCAATCAAGACACAGGCATGG
TGCTTGTTTGCGATGCAGAGATGGTTGCATACGAGGGAAAGACGAGAAAG
CTGCGTTGCAGCGTTTGCCCCATCTCCCGCCTATGGGCCAAAAAGGCGCG
TGAGTCTCCAGGCTCGCTGCAGGAGGACGGGAGGTTTCTCTATTCCTTAT
GAACATGAGAAGGGGATCAAGGCAATGGAGTGGTTGTGACCAAAGGAGAA
CATGTGTACAGAATGCTAGATCTGACTACCATGGCAACAGGGTGACCCCT
AAGCCCCTTTGCTCCGATGCATGCTTTGTAGGTCAGGAAACCGAGCGAAA
GGGAGGGGGAAGCCTGGAAAGCCTGTCTCGACACGATCGTGCAGACCGTG
ACACGGCATGTGGACTAGGAAGCAATGGCTACGCATGGTCCGACATGATG
CACAGCCGGTGCACTACTTTCCTTTCAGCGCACAAGCGCCTTTATTTTGG
CATGCAGTAATTATGCTTTATCTCTCACTAGCATGATCAAATCGAGGTGT
TGTTGTTGGAAGCATCTACGATGGTGCCTGGTACCTGTGCGGTCAGGAAT
CCTTGAGGTCTCTTCTTGTAGATAGACGTGTTTTCTTCTTTCTAGGTTTC
CATGTCATATAGTCAACCTCGTGAACGACTCAGGGGCATTAGCAAACAGA
CGAGGAGGAGGAAACAGATGTGTGTATATGTAGCATGTGGATGTGTGCAT
ATATATAGACCTCACAAACGGGAAATTCGTCGCTCGACCTAAGCATTGCT
ACTGAGCTTCTTGCGCTCAGCGGCAGCAGCGACTCTTCGCTGCTTGATCC
TGCCCTTCTCTCTTCTCCTCCCTTCCTTCCTAACAAGGAAGGAGAGGGAG
GGGCAGGTTGAGGCAGCGAAGAGTTGCTGCTACCGCTGAGCGCAAGGAGC
TCAGTCGATACGTCTGTTTGTGCGATCTCCTTTATAGGCAACACGCAATT
TGTTCTTGGTTTTCCGTTTCTTATTGTGCTTCCTCCTCTTTGTTTTTTTC
ATCTTTCTCCTCCTCTTCCCTTACAGCTCCTCCCTCGAAAGAAGGGCGCA
AGGCTGTATACCCTCATGCATTATGTGTATGTGTATCTGTTAAGTCGCTT
GTTCTGCTCGTTGAAGTCGAAAGTGAGTGAGGATGGTATTGGCTGTTTCG
ACGTGGTGACATCGAGGAAATTTCCCTGAGGAGAGAACGAATTGAAAAAG
CGCCCTCATCTTGTGACGCATGCGAAGAGGAGCATCAAGTCGAAGGGGAG
TGAGGGCAAGAGAAATCATGCGAGGAGGGAAGTCATGCACTGGGATAGTC
GTGCCGTGTATGAATCATTAATGTTTCCGAAAGTATCCCCCTTCGTTCGG
GGAGGGGAATTTCGGGCAATGTTAGAGGGCGGGGCTTCATCTTGAGAAGG
TGTCTGCCCTTGTCTTAAGAATAACCTCCTCAATCGTCATTATAAAATGT
GGCGTCGATGGAAGGGGAGCATCCGTGTGGGAAGGAGCACTCGCCAAGCA
TAAGGATCAAGAATCGAAGAGGCCACCTACAAGAAAGAAGAAAGAAAAAT
GAAGATGCG

Coding sequence (CDS) from alignment at KK037251.1:465045..467103-

>rna9162 ID=rna9162|Name=rna9162|organism=Nannochloropsis gaditana|type=CDS|length=351bp|location=Sequence derived from alignment at KK037251.1:465045..467103- (Nannochloropsis gaditana)
ATGCTCTCTCGATGGCAAAGCCTTTCTTTTACATGTCGATGGTCGTGGAA
ATGGCTGGCTTGTTTCTTCCCCCCCTTAGGTTCTCAACGGGCTTGGACGT
GTGCGTTCCCTGGCAGTTACGAGGCGGAAACGAAGTGCACGAGACGCAAA
GTAAAAATGCCTGTGTCGATTCAACCCTGCAATCAAGACACAGGCATGGT
GCTTGTTTGCGATGCAGAGATGGTTGCATACGAGGGAAAGACGAGAAAGC
TGCGTTGCAGCGTTTGCCCCATCTCCCGCCTATGGGCCAAAAAGGCGCGT
GAGTCTCCAGGCTCGCTGCAGGAGGACGGGAGGTTTCTCTATTCCTTATG
A

Synonyms

Publications