rna9161, rna9161 (mRNA) Nannochloropsis gaditana

Overview
Namerna9161
Unique Namerna9161
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length512
Alignment locationKK037251.1:464560..464995 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100798g3.5008.mrna
Orig protein idgnl|cribi|Naga_100798g3.5008
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:464560..464995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100798g3gene8886Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9161rna9161-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21540.1cds9131Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9161 ID=rna9161|Name=rna9161|organism=Nannochloropsis gaditana|type=mRNA|length=512bp
TGCCATAACTTCTCTTTCATGCCATGTATGCACCTTGGACTCATAGGATA
CCTTTGTGGTGGACAGCAGATGGAAGACGGCGTGGTGACGGCCTGATTTA
CAGAGTGGATGGTCGTGGGCAAACGCAAAGCGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGGGGATGAAGGCTTCATCCAATTTTA
TGTCTCGGACAATGAAGCCGAGGGCCCGGCGGACGAGAATGGGGCCAAGG
AAGGTCTCGATGAAGATTCAAATCTATATGTTCCATACGATCAAGTACCC
TGGCATCGGGAAGGGGACTTGGTGACAGTACCAGGCGGGAAACAAGCGGG
ACAGAAACCCTCCTCAACTGTGGTCAAAACGCAACCCCTTGCTCTCCCCC
CCTCCTTCGCCTTCACAACGAGCTGCTCGACTTTTGCGACCTCCTCGCCC
CCACCAGGGCCGAGTTGGAGGCCCGGCAAAAAGTCACCCGGATTTCAGCC
GACACGGTGAGG
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protein sequence of rna9161

>rna9161-protein ID=rna9161-protein|Name=rna9161|organism=Nannochloropsis gaditana|type=polypeptide|length=126bp
GGRFQRCEGGGRERLGTETCVVKKEDRITPFGSHVENRAFSTPPDRNLDV
AQAADRAGGGQGPVVRGEEGRVMYSPPSQGGGMGGGGGMREGEKKRGRWS
GGRREDHLPGEHQQRGDYNFSKRGRR
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mRNA from alignment at KK037251.1:464560..464995+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9161 ID=rna9161|Name=rna9161|organism=Nannochloropsis gaditana|type=mRNA|length=436bp|location=Sequence derived from alignment at KK037251.1:464560..464995+ (Nannochloropsis gaditana)
GGAGGCAGATTCCAGAGgtgcgaagggggggggagggaaaggttgGGCAC
AGAAACATGCGTTGTAAAGAAGGAAGATCGAATCACGCCTTTCGGGTCTC
ATGTTGAGAATCGAGCTTTTTCGACGCCTCCTGACCGCAATTTGGACGTG
GCACAGGCGGCCGATagggcgggcggcgggcAAGGCCCCGTTgtaagagg
ggaagagggcagagTAATGTATTCACCGCCcagccaggggggagggatgg
gggggggagggggaatgagggagggcgagaagaaacGAGGCCGttggtcg
ggggggaggagggaggatcacCTCCCCGGGGAGCATCAGCAGCGGGGGGA
CTACAATTTCAGCAAGCGGGGGCGGCGCTAGGcgcgaagaggggggaaga
caggGTGTATTAAACCGGGCAGAAGAATAAGAACCT
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Coding sequence (CDS) from alignment at KK037251.1:464560..464995+

>rna9161 ID=rna9161|Name=rna9161|organism=Nannochloropsis gaditana|type=CDS|length=381bp|location=Sequence derived from alignment at KK037251.1:464560..464995+ (Nannochloropsis gaditana)
GGAGGCAGATTCCAGAGgtgcgaagggggggggagggaaaggttgGGCAC
AGAAACATGCGTTGTAAAGAAGGAAGATCGAATCACGCCTTTCGGGTCTC
ATGTTGAGAATCGAGCTTTTTCGACGCCTCCTGACCGCAATTTGGACGTG
GCACAGGCGGCCGATagggcgggcggcgggcAAGGCCCCGTTgtaagagg
ggaagagggcagagTAATGTATTCACCGCCcagccaggggggagggatgg
gggggggagggggaatgagggagggcgagaagaaacGAGGCCGttggtcg
ggggggaggagggaggatcacCTCCCCGGGGAGCATCAGCAGCGGGGGGA
CTACAATTTCAGCAAGCGGGGGCGGCGCTAG
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Synonyms
Publications