rna9160, rna9160 (mRNA) Nannochloropsis gaditana

Overview
Namerna9160
Unique Namerna9160
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2645
Alignment locationKK037251.1:462777..463729 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101393g1.3400.mrna
Orig protein idgnl|cribi|Naga_101393g1.3400
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:462777..463729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101393g1gene8885Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9160rna9160-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21543.1cds9130Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9160 ID=rna9160|Name=rna9160|organism=Nannochloropsis gaditana|type=mRNA|length=2645bp
TTGTTCTTATCCGTTGTATTTTGACTTACCTCTACTCTATGCTTTCGATC
GATATTTGTGATCTTAACGAATGAAGCTGAAGCGGCGAGAGCATCTTGCT
GAGCGCGCGGAGACCACACTGAGGAGTAATTGGCACATGGATTGTTGTCG
GACATGTGCATTGATGGCCTCCCAGACTTTGCATTTAAATTTTATCCCCA
AGGCCCGATTTAGTAATTTGAATCGCCAACTTTTAAAAGTCCATTTAAAA
TAGATCAATGAGACTGTAGAGAGAGGAACGTTGGGTTGGCGGAGCGTAGC
GCTCAAAATCGAAGCGGTTTAGAGGTAGCTTGGGACGAATGAAAGATCGA
TAGGGAGCTTTATCCTTTTTGGACGAATAATCGTAAGCGTTATTCTGAAG
GCAACACTCCTCTCATTCACTCATCAGCTATCCCTGGTTCGAGGATAAGC
GCTCCCACAGCCTCCGTGTACCACGGTCAGGGGACCTATTCTTCGTTTAG
TATCATGGCATCTTCTGACGCCACGCGCCCAAGACGACCTCAACCACAAG
TCTGGGCAACAAGCGCGGCGGCAGCGGCAGTACTGCCCACTTCAGTGAAT
TTCGCCGTTGGCATGGCCAGCGGGGTTTCTGGATGGCTCATTGTCCATCC
TGCCGACGTCGTGAAGGTAAAAGGAGCGGGTGGGCAATCTCGTGGATAGT
GAGCTTGGTCTTTGTCGAATACCTTGATTGTGTTCATGTTATGTCGATCG
CGATAGATTTCTTCCCTTTTCCGCCCGAACAGGTACGCATGCAATTGGCA
GGTAAAGCTGGGGGAGGCATGTTGACGACGGCGCAAGATATCATCAAGCG
GGAGGGTTTCGCAGGTTTGTACAGCGGCCTCTCTGCAGCCATCGCCCGCC
AAATGTCCTACACAACCATGCGCTTGGGTTTCTTCGACGAGATCAAAGCT
TTCCTCGCCCAACGTCAGGTGCAAGAGAATGCCTTGACGCGGTCCCTGTC
CGCCATGACGGCAGGCGCCTGTGCCTCCTTCCTGGCTTGTCCTGTGGAAG
TGTGCCTGGTGCGCATGCAAGCCGACGGGAAGCTTCCCCCTGAGCAACGA
CGGGGCTACAAGCACGTGGGGGACGCGTTACTGCGTGTGGCCAGGGAGGA
GGGCGTGCTCACGTATTGGCGGGGGGCGGGGCCCACGGTGATGCGGGCAA
TGGTGGTGTCCACCACGCAATTGGGGACGTACGACCAAGCCAAGGTGACG
TTTAAAGAGACGGGACTCCCGGACGGGACCAGTCTGCACTTGATTTCTTC
CCTGACCGCTGGCTTGGTGTACTCCCTCGCTTCCTTGCCCTTGGATACGG
CCAAGACCCGCATGCAGTCCCAAGCCGCTCCCAGCACTCCGGGAGGCGCC
TTGGCGTATCGATCGACGGGCCAGACCTTGATGAAAATCGCGTCGGAGGA
AGGAGTAGGGGCCTTGTGGAAGGGTTTTGGGGCGTATTTCCTCCGGGGAG
GAGGGCACACGGTGTTCATGTTTTTATTCTACGAGCAATATCGTGCATTG
GCGCGGTCTTTTTACAGATGAATTCTCATGGAGTTGGGATATTTGAGAAA
CTGAAGTGGCGAGGGGCGGGCTGAGGGAGTTGCATCCTGAATTTTCGCTC
GATTTTGATGTAATGCATTTCGGGTGCTGGCCAATGTAACAGGCATCAAA
CTGATGACGTGTTCGATTGGATTTTGGTGCACTTTTATTCGGAACAAATA
TAATTAAAAGTCAGAAATAAAGGCGCAGGAGGGGACTTGTCATGTACGTT
CTTTTCATGGCTTCAACCCCTTGATTACGTCCCCGGTGCAAACGAGAACT
TGACTGATGCTACCTCTTGAATTGCAAACTATCGTCTCGATGGTACGCTG
TCTCCGCCATGCACAAGTATCGAAGGATTGGGGGCTCGCAAAGAGGCCAT
GGTTATGGTGTCGGAATCCAATTTAGCTGAGTGACGTACGTGGTGCTCTC
AGCCTTCCCATGATTCACCTTCCTTTCCACCCTCCCATTACCAAACATCC
ACAACTCCCGCCAGAACGACAGCAATTGAAATCAACGAGAACCATAGGAC
TTCAGCCGCTTGAAGTTCAGCGTCCTTCGTCCTCCGTGTCACCTACTGCA
CAGGCCCCCCTTCCTTCGCCTCCTCGTAGTAGTTGGCAAGAAGGAGAAGC
CAATCCCACGGTTCCACCACCCACGCACGTTTTACCCCCACTATACCATC
CTCCTGACATCACTTGCGGTAGTGCTGACCAATCTATGGCGGTATATGAA
GAAAAAGGTCCCAAACCCACCTCTTTCGTCCAGAAAGTCGCCTTGGGCGT
TGCACATGGAGGCGCTTTGCTTTCTGTCATCCTTGTGACACGGTGGGCCG
TGGGGACAGGGGAAGGATTTCTAGGAGGTCTGGACTGGGACGACCAGGAC
CTGGTTTTCAACTACCACCCTGTTTTAATGGTGGCAGCTTTTGTGCTTGC
GTTTACGGAGGCGCTGTTGGCGTACCGTACCTGGCCGTTCTCGCGGCAGA
CGAACAAGACTTTGCACTTCATGTTTCAGTCGGTAGCCGTGATCCTGATG
AGCGTCGCCTTGCGGGTGAGGATACCCGGAGGGAGGACGGAAGGA
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protein sequence of rna9160

>rna9160-protein ID=rna9160-protein|Name=rna9160|organism=Nannochloropsis gaditana|type=polypeptide|length=133bp
MVVGKRKAEEEEEEEEEEEEEEGDEGFIQFYVSDNEAEGPADENGAKEGL
DEDSNLYVPYDQVPWHREGDLVTVPGGKQAGQKPSSTVVKTQPLALPPSF
AFTTSCSTFATSSPPPGPSWRPGKKSPGFQPTR
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mRNA from alignment at KK037251.1:462777..463729+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9160 ID=rna9160|Name=rna9160|organism=Nannochloropsis gaditana|type=mRNA|length=953bp|location=Sequence derived from alignment at KK037251.1:462777..463729+ (Nannochloropsis gaditana)
TGCCATAACTTCTCTTTCATGCCATGTATGCACCTTGGACTCATAGGATA
CCTTTGTGGTGGACAGCAGATGGAAGACGGCGTGGTGACGGCCTGATTTA
CAGAGTGGATGGTCGTGGGCAAACgcaaagcggaggaggaggaggaggag
gaggaggaggaggaggaggaggagggggatgaagGCTTCATCCAATTTTA
TGTCTCGGACAATGGTAGGATATTGTTTGATCAACTCCATCGTTGACTTT
GtacccctttctctctccttgtcTTGGTCAATATGTTCGCACGTCATTGT
GTCCTTcttgctttccttttccattgcCCTGCCTCTGCAGAAGCCGAGGG
CCCGGCGGACGAGAATGGGGCCAAGGAAGGTCTCGATGAAGATTCAAATC
TATATGTTCCATACGATCAAGTACCCTGGCATCGGGAAGGGGACTTGGTG
ACAGTACCAGGCGGGAAACAAGCGGgacaggtgagggaggaggcgagaga
aggggggagagggagggagtgagggagcgaggggaagagtgaggcaagaa
gaaaggaacaAGGAACATGGGTACTTcggaaagaaaatgaaaaTTTGGGG
GATTTCTTTTCCTAAGTGCAGGGTTTGGGGGGGATGTTTCGAAATTTATG
AAGGACAATAGAGAAGTTTGCCTAAGGGCCTTTCAACGTcataccctccc
tccctccctccctccttccctccctctttccctcccttccttcttcctcc
cgaacCACAACtcatccctttcctctcttctccatccaTCCGCAGAAACC
CTCCTCAACTGTGGTCAAAACGCAaccccttgctctccccccctccttcg
ccttcacAACGAGCTGCTCGACTTTTGcgacctcctcgcccccaccAGGG
CCGAGTTGGAGGCCCGGCAAAAAGTCACCCGGATTTCAGCCGACAcggtg
agg
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Coding sequence (CDS) from alignment at KK037251.1:462777..463729+

>rna9160 ID=rna9160|Name=rna9160|organism=Nannochloropsis gaditana|type=CDS|length=1206bp|location=Sequence derived from alignment at KK037251.1:462777..463729+ (Nannochloropsis gaditana)
ATGGTCGTGGGCAAACgcaaagcggaggaggaggaggaggaggaggagga
ggaggaggaggaggagggggatgaagGCTTCATCCAATTTTATGTCTCGG
ACAATGAAGCCGAGGGCCCGGCGGACGAGAATGGGGCCAAGGAAGGTCTC
GATGAAGATTCAAATCTATATGTTCCATACGATCAAGTACCCTGGCATCG
GGAAGGGGACTTGGTGACAGTACCAGGCGGGAAACAAGCGGgacagAAAC
CCTCCTCAACTGTGGTCAAAACGCAaccccttgctctccccccctccttc
gccttcacAACGAGCTGCTCGACTTTTGcgacctcctcgcccccaccAGG
GCCGAGTTGGAGGCCCGGCAAAAAGTCACCCGGATTTCAGCCGACAcggt
gaATGGTCGTGGGCAAACgcaaagcggaggaggaggaggaggaggaggag
gaggaggaggaggaggagggggatgaagGCTTCATCCAATTTTATGTCTC
GGACAATGAAGCCGAGGGCCCGGCGGACGAGAATGGGGCCAAGGAAGGTC
TCGATGAAGATTCAAATCTATATGTTCCATACGATCAAGTACCCTGGCAT
CGGGAAGGGGACTTGGTGACAGTACCAGGCGGGAAACAAGCGGgacagAA
ACCCTCCTCAACTGTGGTCAAAACGCAaccccttgctctccccccctcct
tcgccttcacAACGAGCTGCTCGACTTTTGcgacctcctcgcccccaccA
GGGCCGAGTTGGAGGCCCGGCAAAAAGTCACCCGGATTTCAGCCGACAcg
gtgaATGGTCGTGGGCAAACgcaaagcggaggaggaggaggaggaggagg
aggaggaggaggaggaggagggggatgaagGCTTCATCCAATTTTATGTC
TCGGACAATGAAGCCGAGGGCCCGGCGGACGAGAATGGGGCCAAGGAAGG
TCTCGATGAAGATTCAAATCTATATGTTCCATACGATCAAGTACCCTGGC
ATCGGGAAGGGGACTTGGTGACAGTACCAGGCGGGAAACAAGCGGgacag
AAACCCTCCTCAACTGTGGTCAAAACGCAaccccttgctctccccccctc
cttcgccttcacAACGAGCTGCTCGACTTTTGcgacctcctcgcccccac
cAGGGCCGAGTTGGAGGCCCGGCAAAAAGTCACCCGGATTTCAGCCGACA
cggtga
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Synonyms
Publications