rna916, rna916 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna916
Unique Name	rna916
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3271
Alignment location	CM002456.1:722346..724263 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100022g29.855.mrna
Orig protein id	gnl\|cribi\|Naga_100022g29.855
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:722346..724263 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100022g29	gene879	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29756.1	cds916	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna916	rna916-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:722346..724263-
coding sequence from alignment at CM002456.1:722346..724263-

mRNA sequence

>rna916 ID=rna916|Name=rna916|organism=Nannochloropsis gaditana|type=mRNA|length=3271bp
CAAGACCGAGAGCCTCCGGGGCCTCTGGAACGACCTGGGCCGGGCTCGGG
GGGGCGAGGCCGCCGCCTTCAACCTCCTGCTTCGCCTCTTCACCTACGAG
GACGTGCTGGGCGATATGGACGAGGCCTTCGCGCAAGAGCCCTCCTCCGT
CGAGTTCTACATCCCGCAGCTCGCCACCTTCCTCCTCTACGGGGCCTTCT
GGTCGAGCGGGAGCTTGCAGGCCTTCCTGCTTGACAAGAGCGCTCGCTCC
ATCCAGTTCGCGCACCGGCTGTACTGGTTCCTGCTCGCGTCCTGCTTGGA
TGGCTCGGGCATCGACCAGGAGGGCCGCCGGCAGGTGGGCACGCTCATCG
AGGAGGTGAGGAGCCGAGGCCAGCGGGCGGCGCGGCGGCTGGAGCAGGGC
CGGACCGTGCAGGAGCTCTACCCCTCCCGGGGCAGCTCGTCGGCCCTGCA
GCGCCCTACGCAGGCTTCCCGCCGGTGGGGCCGGGGAACGCGAAGCCGTG
ACAGCTACTTCTCCAAGGACCGCGCCTCCTCTGCCACCACCACGAGCGCC
TCGAGCCTGGGTCGGGCCCCGCCCCCCCCGCCCGGGAGACGGGGATGCGC
AGGAGGAGGGGACCACCTACGTGGACGTGGCGCGGCTTGGAGAGACGCCG
CAGGCACCGTCCTGGTCCCCGTCGGAGCAAGGAGATGCGCAGAGGGCCTC
GGCGTCCTCGCCGCCCCTCCCGCCCCCCGTCCGCCTGAGTGGACCCTCCG
CCCCCGGGGGGGACTCGCCGTACTCGCCCGTCGCGCGCTTTCCCCTCCAT
CTGTGCCGATACCAGGGCACCGACGACGACATGTTCGGCGTGCTCCCCCG
CTTTCTCGACGCGCTCGTCCTCATCGCCCGCTCCTTGGGCAGCGTCCCCC
GAGAGAGGCGGACTCCGAACCTGCGGGTCTCCCTCCGCGAGCTCGGCCGG
CGCCTCCTCCCGTCCAACCTGGTGTATGTCCCCGTCGGCAACCCCTACAA
CCGCGTCTGGCGCCTGCATGCCTCCGAGTCCTTCGCCTTCTCGACCAAGG
AGCGCGTGCCCTGCCTCGTGTGCCTGGAGGTGGTGGACTACGCCCCAAGT
CCCCGGCGGCACGGTCCCTGCGGGGGCGAAAAGGGGGGCGGGAGGAAGTG
GTGGAAGCAGGTGATGGACGGGGTGGGGGAGGGCATGCCGTCTATCTCGC
ACACCTTTAAATTTGGAGACAAGGAGTGGACGTTGAAAATCGGCGAGCCC
AGGCGGGAGGAGGAGGGGGAGGCTGGGGAGGAGACGAGGGGCGGGGAGGC
GGACGAGAGGGACGGCACTGCTCAGCTGGGAAAGTGGGAGCCGTTGCTTC
CAGCGGATCCGTCCATGGTCCCGGATGTGCCTCGCTTGATGCGCCGCGTT
TCCTCCTCTGTGGGGGTAGATGGGCTTGCAGCCACCCTGGACGCGGGCGG
GATGGGGCAGTGGGCGAGCGAGGTGGCGGCCGAGGGAGGGGAGGGGGGAA
GGCGAGAAGGAGGGGAGCATGTGCTCTTGAATGTCAGTCAGCTCCGACAA
GCCCAGGAGCAGGGGCAATGTGAGGAGAGTAAGGAGGCACAGCGGGGACA
GGGGACCATAGCATCCCCTGAGGCGGTAGGGGGGAAGGCGGAGTGGAAGG
GGGAGGCCGGGCTGGGGGAAGACTTGAATGAAAGCGCGCTGGGAGCGGCG
CAGCCGGCGGTCGTGGAAGACTACGGCACCTTCTCCCCGGGCACGTCCCC
CGGGAAGAGGCGGCTTGAGAGGGCGCGCGAAGGGCGAGAGAGAGAGCGGG
GCCGGGGCCGTGGGAGTCCGCGGACGGAGGTCCCTGCTCCGGTCCACACA
GACACGAGCGGCTTCGGCGGCCAAGGTGCTGGCAGGAGAAGCGGCAGCAG
CTCAGGCACGCTTGGCATGGAGGGTCTAGAGGCGAAGGCCTGCGACCCGT
CCTCGACCCTCTCCCCCGCAGCCGCGGCTGTACAGCCTCCCGTCATCTTC
AAAGAGCGCTGGAAAGAGAAGGAGGCTCGCCTCCGCGGGCGGTCGGAAAT
CGGACACCTCCCGGGCTGGCGCCTAGTGCCGGTCATTGTCAAGGCCAACG
ACGACCTCCGTCAGGAGCAATTCGCCAGCCAGCTGCTGGGCCAGATTGCC
CACGTGCTTCGCCAGGCCGAGGTGCCGGTCTGGGTACGCCCCTACGGGAT
AATCGCCACGTCCTTCGACGGGGGCTTGATCGAAGCCATTCCTGACACGG
TCTCCCTGGACGCCTTGCGCCGAAACGACCCCTCCTACACCACCCTGCCT
GATTTCTTCCAGCGTTTTTTCGGGGCGCGTCAACCCGACGGAGAGCTTGC
GCTGGCTCGTGCGCGCCAGTGCTTTTTGGAGTCCCTGGCCGCCTACAGCA
TTGTCTGCTTCCTCCTTCAGGTCAAGGACCGGCACAACGGGAACATTCTC
CTGGACGCGGAGGGGCACGTGATTCACATTGACTTTGGCTTCCTACTGGC
CAGCTCTCCCGGGAACGTGAAGTTCGAGCGGGCGCCGTTCAAGCTGACGG
CAGAGATGGTGGACGTATTGGGCGGACCGCGTTCGGCAGCATTTCGTCGC
TTCCGAGAGCTGTGCGTCAAGACCTTCTTGGAGCTCCGACGGCAGAGGCA
CAAGATCATCCTGCTGGTGGAGATGGCCATGAACGCCAACGACAACTTGC
CATGCTTCGGGGGGCGTCCGGCTGCGGCGGTTGAGGCCCTGCGGCAGCGG
TTCCAGCCCGAGTTGAACGACCGCGCGTGCGGCGACTTTGTGAACGGGCT
CATCGACGACAGCGTCGGGAGCTGGTCTACGCGCTGGTACGATGTCTACC
AGCGGGCCTTTGTATTGTAGAACGGGGGAGGCAAGATACTGTGTATGGAG
ATGGTGGGGAGGTGGTGGCAGGGCTCGGGGAAGGGCAGCTTGCAGTAGCC
GAGTGCTTCACGCTCTCGCCTTTTGCACGTCGGCGTTCGCATGAACCCTT
CCGCGAAGCGCCTGAGGCTGCCGACCATGACTGTGGAGATATCAGCCAAA
AGTAGTGTAAATAGAAATTGAACGCAACCTCCTGCCATAATATTTTCCGG
TACATTTTGCTGCTTTAGAAATGCCACGACAGCTAGGCATTTCCGAGCCA
GACGGCTATTCGGTCACACAACGCTCCAAAACCTCTTTGCCCCCTTCCGT
AATCGCTATCCTGCCAGGCATATATCCTCTCTTCTGGCTTTTCACTCGCT
TCGTCCCTCTCACTATACACA

protein sequence of rna916

>rna916-protein ID=rna916-protein|Name=rna916|organism=Nannochloropsis gaditana|type=polypeptide|length=183bp
MMTFRRALNHIPSKSVRPLLFPPAGLYAMVPKGTSMAHQLWALASRVARG
STWRGSTVRQGHLIPSSLCGAAFSNPLRPRNSAMSSSSSSSSSSGGSPWS
SSAPPASPPSPPSGEACDAASPRGGAAGAVNLSGPFFDVRVYSVEEAMEK
LHLQRPAVPLGFVWAHEEKPDPSIDGPRSGRWG

mRNA from alignment at CM002456.1:722346..724263-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna916 ID=rna916|Name=rna916|organism=Nannochloropsis gaditana|type=mRNA|length=1918bp|location=Sequence derived from alignment at CM002456.1:722346..724263- (Nannochloropsis gaditana)
GCCATTCGGCCACGAATCCACCACAGGGCCCACTTGATCCATATTGAGAT
TTGCTGTGCCGATTGTAGGGCGGGAGAGGGGTCACGGTGAGATCCACGCC
AAGATAAAATGCGGCACGGGAAGTCGGGTCCGAGGTCACCACGATGGCTG
CAGGTGAAAACAAGACACAAACTCATGGTGAAAATGGGGAGGGATTTTCC
TGCTCCTCTTCGTGAATTGAAAGAGGGTTACATCTTACCTGTTGGGATTC
CCAGTAGCTTGCTTCCCCTCCCAAACCCTTTGACCACCGAGGCTTTAAGC
AGGAATGGAAGCTGCGGTGTTGTGCCTCCTGCCCCGTTTACGGCACTGCC
ATCACTGCCTCCGTCCCCAAGGGACTCTATCGACATGACCTTGTAGCGGC
GGCTGCCTGAGACGGCTGTCGCGCTGGTGTCCTTAGTCGCGCCTGTCCGT
GTGCCCATAAAACCAGATTTAAACATCGTGAAAAACCGGCGGGCCAAGTC
TGCGCGTCGCGCTGGTCTGGCATCGCTAGCTGACCTTGGCGCCAGGGTCT
CCGGCCCCATCACGTTTTGTTGCGAATCCCAAAAAGTCGCACAACGCATG
CGCGTGACCAGAAGCTGGCAAGGCTAGCGCGTTGTAGGTTGGCAGACTTG
GCTGTGACCACGGTCCATCCAAGCGCCGTGACTGCGCCGTAACTACCGCG
AGGGCAACTAAGGCCGGCGGTCCCAAATGATGACCTTCCGACGTGCACTG
AATCACATCCCATCGAAATCCGTCCGCCCACTTCTGTTTCCCCCCGCAGG
TTTGTATGCGATGGTGCCTAAAGGTACTAGCATGGCACATCAGCTTTGGG
CATTGGCGTCCCGGGTGGCCCGTGGTAGCACTTGGCGGGGGTCAACGGTG
AGGCAAGGCCACCTGATACCATCTTCCCTCTGCGGGGCAGCGTTCTCCAA
CCCCCTCCGACCCCGAAACTCTGCTATGTCATCGTCATCCTCTTCGTCTT
CGTCCTCAGGGGGCTCCCCGTGGTCGTCCTCCGCACCGCCCGCTTCGCCA
CCCTCTCCCCCCTCGGGTGAAGCATGCGACGCCGCCAGCCCCAGAGGGGG
GGCGGCAGGTGCCGTGAACTTGTCCGGGCCCTTCTTTGACGTGCGTGTGT
ACAGCGTGGAAGAAGCCATGGAGAAACTGCACCTTCAGCGCCCCGCGGTT
CCGCTTGGCTTTGTCTGGGCGCACGAGGAGAAGCCGGATCCTTCCATTGA
CGGACCGCGGTCTGGTAGGTGGGGCTGAGGGCGACCGAGAGGGGGAAAGA
GGTGGTGTGGCCGGTAGGCTCTTGGTATGGAAACGTTTTGTCCGTGTTGT
CATCCCCAACTAATACGGAGTCGAACACGAACAGCACCGGTGCTCGATGA
CAGCGCCGAGGGAGGCAGCACGGCCGGCGAGGGCATGCACCTTATCAAAC
GCACATTCCAGCCCAGCGTCTTGCGACGCAAGCGAGCTCACGGCTTCTTG
AATCGGCTGAAAACCAGGGACGGGAGGAAAATCTTGGCCAGACGGCGGGC
AAAGCACAGGACGCGGATGGCGGGGTAGGGGGATATCGGAACGGGGCGAG
GAGTGGGAGAGGGTAGAGGCCGCCGACTGCGCGTGGGAGTGCGCAGCATG
TGTATAGTGAGAGGGACGAAGCGAGTGAAAAGCCAGAAGAGAGGATATAT
GCCTGGCAGGATAGCGATTACGGAAGGGGGCAAAGAGGTTTTGGAGCGTT
GTGTGACCGAATAGCCGTCTGGCTCGGAAATGCCTAGCTGTCGTGGCATT
TCTAAAGCAGCAAAATGTACCGGAAAATATTATGGCAGGAGGTTGCGTTC
AATTTCTATTTACACTACTTTTGGCTGATATCTCCACAGTCATGGTCGGC
AGCCTCAGGCGCTTCGCG

Coding sequence (CDS) from alignment at CM002456.1:722346..724263-

>rna916 ID=rna916|Name=rna916|organism=Nannochloropsis gaditana|type=CDS|length=552bp|location=Sequence derived from alignment at CM002456.1:722346..724263- (Nannochloropsis gaditana)
ATGATGACCTTCCGACGTGCACTGAATCACATCCCATCGAAATCCGTCCG
CCCACTTCTGTTTCCCCCCGCAGGTTTGTATGCGATGGTGCCTAAAGGTA
CTAGCATGGCACATCAGCTTTGGGCATTGGCGTCCCGGGTGGCCCGTGGT
AGCACTTGGCGGGGGTCAACGGTGAGGCAAGGCCACCTGATACCATCTTC
CCTCTGCGGGGCAGCGTTCTCCAACCCCCTCCGACCCCGAAACTCTGCTA
TGTCATCGTCATCCTCTTCGTCTTCGTCCTCAGGGGGCTCCCCGTGGTCG
TCCTCCGCACCGCCCGCTTCGCCACCCTCTCCCCCCTCGGGTGAAGCATG
CGACGCCGCCAGCCCCAGAGGGGGGGCGGCAGGTGCCGTGAACTTGTCCG
GGCCCTTCTTTGACGTGCGTGTGTACAGCGTGGAAGAAGCCATGGAGAAA
CTGCACCTTCAGCGCCCCGCGGTTCCGCTTGGCTTTGTCTGGGCGCACGA
GGAGAAGCCGGATCCTTCCATTGACGGACCGCGGTCTGGTAGGTGGGGCT
GA

Synonyms

Publications