rna9158, rna9158 (mRNA) Nannochloropsis gaditana

Overview
Namerna9158
Unique Namerna9158
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length300
Alignment locationKK037251.1:457809..458244 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100684g3.4516.mrna
Orig protein idgnl|cribi|Naga_100684g3.4516
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:457809..458244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100684g3gene8883Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9158rna9158-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21546.1cds9128Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9158 ID=rna9158|Name=rna9158|organism=Nannochloropsis gaditana|type=mRNA|length=300bp
ATGGAACAGCGAACACGAAGCGCTCTCTGCGGCCACACCGCTCGAATGCT
GCCTGTAATTTTTTCATGGCAAGTGGCTCGCCATTCACCAACAATGAAGA
CATTGTTACAGTGCCCGTACTGCGCTTGTACGAATGCAGCAGTTAATAGA
GTATTTACATCCCGTAAGTGGACGGGGTGGCCAACCATTAATAAAGATAT
GAACGCCTCTCAAAAGCCAGATGCCAATGTCTCATGTAATTCGATGAACC
GCACGCTTGAGAATGCTGGATTGCGATTTGTTCGAAGAGACATAATATGA
back to top

protein sequence of rna9158

>rna9158-protein ID=rna9158-protein|Name=rna9158|organism=Nannochloropsis gaditana|type=polypeptide|length=78bp
MHMSDNNPCANYSSVWSPRAQQDALAASASFVKITNIDRKHRVEDHTLVV
AHGGKQQVICAFQAHYPPDHHIEPHLDP
back to top

mRNA from alignment at KK037251.1:457809..458244-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9158 ID=rna9158|Name=rna9158|organism=Nannochloropsis gaditana|type=mRNA|length=436bp|location=Sequence derived from alignment at KK037251.1:457809..458244- (Nannochloropsis gaditana)
ATGCACATGTCCGACAACAATCCATGTGCCAATTACTCCTCAGTGTGGTC
TCCGCGCGCTCAGCAAGATGCTCTCGCCGCTTCAGCTTCATTCGTTAAGA
TCACAAATATCGATCGAAAGCATAGAGTAGAGGTAAGTCAAAATACAACG
GATAAGAACAATATCATTCTGAATACTATTCAGGACAGTGTGAACGATAT
GCTCATCAAATTAAGCTGTTTAATGTCTTCGACAACATCCTACTGAATAG
GATCACACTCTGGTTGTGGCCCATGGTGTATATAGGGAGCAGTGTTTCCC
TTACACTCCCAATTTCCAGTAAAGTATTCAAGAATAAACAAACAAAACAA
TCCCTAAGGGAAAACAACAGGTAATTTGCGCTTTCCAAGCACACTACCCT
CCAGACCACCACATTGAACCCCACCTAGATCCCTAA
back to top

Coding sequence (CDS) from alignment at KK037251.1:457809..458244-

>rna9158 ID=rna9158|Name=rna9158|organism=Nannochloropsis gaditana|type=CDS|length=711bp|location=Sequence derived from alignment at KK037251.1:457809..458244- (Nannochloropsis gaditana)
GGAAAACAACAGGTAATTTGCGCTTTCCAAGCACACTACCCTCCAGACCA
CCACATTGAACCCCACCTAGATCCCTAAGATCACACTCTGGTTGTGGCCC
ATGGTATGCACATGTCCGACAACAATCCATGTGCCAATTACTCCTCAGTG
TGGTCTCCGCGCGCTCAGCAAGATGCTCTCGCCGCTTCAGCTTCATTCGT
TAAGATCACAAATATCGATCGAAAGCATAGAGTAGAGGGAAAACAACAGG
TAATTTGCGCTTTCCAAGCACACTACCCTCCAGACCACCACATTGAACCC
CACCTAGATCCCTAAGATCACACTCTGGTTGTGGCCCATGGTATGCACAT
GTCCGACAACAATCCATGTGCCAATTACTCCTCAGTGTGGTCTCCGCGCG
CTCAGCAAGATGCTCTCGCCGCTTCAGCTTCATTCGTTAAGATCACAAAT
ATCGATCGAAAGCATAGAGTAGAGGGAAAACAACAGGTAATTTGCGCTTT
CCAAGCACACTACCCTCCAGACCACCACATTGAACCCCACCTAGATCCCT
AAGATCACACTCTGGTTGTGGCCCATGGTATGCACATGTCCGACAACAAT
CCATGTGCCAATTACTCCTCAGTGTGGTCTCCGCGCGCTCAGCAAGATGC
TCTCGCCGCTTCAGCTTCATTCGTTAAGATCACAAATATCGATCGAAAGC
ATAGAGTAGAG
back to top
Synonyms
Publications