rna9150, rna9150 (mRNA) Nannochloropsis gaditana

Overview
Namerna9150
Unique Namerna9150
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length916
Alignment locationKK037251.1:449302..449605 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100564g3.6259.mrna
Orig protein idgnl|cribi|Naga_100564g3.6259
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:449302..449605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100564g3gene8875Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9150rna9150-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21549.1cds9120Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9150 ID=rna9150|Name=rna9150|organism=Nannochloropsis gaditana|type=mRNA|length=916bp
GCAGTGCATTGCATAATAAAAGTGTTAAATCTTCCTTTGTGAATACTTTT
CAACCCGCCAACATCGGCGTGTTGGCCTCATTTCGACCAAGAGATCCCAG
ATTGCTCTCTATAGCAAAATTGCAATGCGGCACTCTGGCGCATGCCGACG
TTGTTCGAAAGACGCTCTCCCACCGTGCCTTGATTGTGAAAACAAACCTG
CTTGAAGACAACAAATCGATGTGGTTAGCCTCTATAATGACCTCTCATTA
CATTCCGATGCTTTGTCTTTGGGCTATCGATGACCAGCTTTACGTTGAGT
CCTAGGCATCGCGCCCCTCGGCCCATTCTGTATATCGACATAAAGCGAAT
CCAAGCAAATGCAAGCCCACGACTCGACTGCAACTACAACATCGACAACC
AATGCACAAGTGACGACAGTGTCCGAAGCAGTCTTTGATCTCCTTCTCTG
TCCAATTTCCCGTTGCATCATGAGAGACCCTGTGCTCACATGCGACGGCT
ACAGCTATGAACGAGAGTCGATAGAGGCCTGGTTTGCGCGAGGTCATCGC
ACCTCTCCAATGACAGGGCTGGTACTACCCTCCCGCACGCTTTGGTCTAA
CTTGGTGCTCAAGAACCTGAGCCGAGCCCTTGAGCCCCTCAGTGCCGAGG
AGGAAGAGAGAGGGAAGGCTCCTCGGGAGAGCGAGGGGCAGCAGGCAGGG
GTGTGGGTAGGACACAGCCCTGAAGGCACGAGTAGTGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAAGACGGGGAGGAGAGCGGGTCGGATTCGTCGG
AGGAGGAAGCCGAGGCGCAGGGAGTGCTGCGTGTCCTAAGTGCCTTGCCT
GCCCGTTCCCGCTGGCAGAGTAGGCGAAGGGGGCGGGTGGGAGGGGTGGT
GACAAGCCGCGCGTAG
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protein sequence of rna9150

>rna9150-protein ID=rna9150-protein|Name=rna9150|organism=Nannochloropsis gaditana|type=polypeptide|length=81bp
MVYIGNSVSLTPPIFSKVFKNKQTKQSLRENNRSLNYLTSSFLHIHTNPH
HTPQTSRPSSLNNDTSGSQTHEFVVFWKTRG
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mRNA from alignment at KK037251.1:449302..449605+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9150 ID=rna9150|Name=rna9150|organism=Nannochloropsis gaditana|type=mRNA|length=304bp|location=Sequence derived from alignment at KK037251.1:449302..449605+ (Nannochloropsis gaditana)
ATGGTGTATATAGGGAACAGTGTTTCCCTGACTCCTCCAATTTTCAGTAA
AGTATTCAagaataaacaaacaaaacaATCCCTAAGGGAAAACAACAGGT
AATTTGCGCTTTCCAAGCACACTACCCTCCAGACACTTACAATGAACCCC
ACCTAGATCCCTAAACTACCTCacctcgtctttccttcaCATCCACACCA
ACCCCCATCACACCCCACAAACGTCCCGGCCCTCGTCCCTCAACAACGAT
ACCTCGGGTAGTCAAACACACGAGTTCGTCGTGTTTTGGAAAACACGGGG
ATGA
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Coding sequence (CDS) from alignment at KK037251.1:449302..449605+

>rna9150 ID=rna9150|Name=rna9150|organism=Nannochloropsis gaditana|type=CDS|length=492bp|location=Sequence derived from alignment at KK037251.1:449302..449605+ (Nannochloropsis gaditana)
ATGGTGTATATAGGGAACAGTGTTTCCCTGACTCCTCCAATTTTCAGTAA
AGTATTCAagaataaacaaacaaaacaATCCCTAAGGGAAAACAACAGAT
CCCTAAACTACCTCacctcgtctttccttcaCATCCACACCAACCCCCAT
CACACCCCACAAACGTCCCGGCCCTCGTCCCTCAACAACGATACCTCGGG
TAGTCAAACACACGAGTTCGTCGTGTTTTGGAAAACACGGGGATGAATGG
TGTATATAGGGAACAGTGTTTCCCTGACTCCTCCAATTTTCAGTAAAGTA
TTCAagaataaacaaacaaaacaATCCCTAAGGGAAAACAACAGATCCCT
AAACTACCTCacctcgtctttccttcaCATCCACACCAACCCCCATCACA
CCCCACAAACGTCCCGGCCCTCGTCCCTCAACAACGATACCTCGGGTAGT
CAAACACACGAGTTCGTCGTGTTTTGGAAAACACGGGGATGA
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Synonyms
Publications