rna915, rna915 (mRNA) Nannochloropsis gaditana

Overview
Namerna915
Unique Namerna915
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1769
Alignment locationCM002456.1:719345..722615 +

Link to JBrowse

Properties
Property NameValue
Productphosphatidylinositol 4-kinase
Orig transcript idgnl|cribi|Naga_100022g28.866.mrna
Orig protein idgnl|cribi|Naga_100022g28.866
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:719345..722615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100022g28gene878Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna915rna915-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29767.1cds915Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna915 ID=rna915|Name=rna915|organism=Nannochloropsis gaditana|type=mRNA|length=1769bp
AAAAATAAAAATATGGGATGGTGAGCTGTATATTGCGATGGTCGGATCTG
AGGGGTGGTCCAGGCGAAGCTGTGGGCGGCCGTGGTCAGGGCCTGGAAGG
CAGAGACTCTCCCCTCGGAGGCAGTCCTCGTTCTTTTTCGGCGAGTGGCG
CGAACACTTGAAAGTGTTGCCATAAGTTCTGGTCATAGCAAAGGTCATGT
GGTCATATCAAACCTGTTTAGGTGGTCTGTAGGGACCCACCCATGCACAT
CTATACTTGTGAGCCCTTCTTTTAGATAAAATATAAATCAATCCAGTTGT
TTAGATTTGAGGTGGATGGGAGGAAGACGATCAAGCCGTTCAAAGGGCTT
GAAACTAGTGAGTGCGATTATTCCTCATAAAGCCTTTAGGAAACATATTA
GAGACTTTTATGGACTCTCTGCATGCTGTAGAAATAAATTGGTGAGTAGG
AACCCGAATTTCCTATTTTATCCTACTCGGATGCCCTCCACTCGACTCAG
CTTAAAAGAGTCCCCTATGAAATCCACGGAGGATGTTCTCACGGCACTTA
ATCGAATTATGAACCTACGGGAGTAAGAGCCTCAACGACAACATGACCTA
CATGGACTATCGACAACAAAGTTTGAGGAGCTACTGGCCGCCGCATACGA
CAGGTCGCTGGGCATCAAGAGCATGCCATCTCGTCAACAACCAAAGCGGA
TATACAACATCAGCGAATTTCCATCTCACTATCGCATTAAAGGGGGTGTG
GACGATTCTGACCGGCAACTTTTGGGCGGCATCTACTCGGGTGTTACTTC
CTCCTTTGAGTATGGTCTTGGCGAATCGACGTATATTGCCGCCTGGACGA
GGATGCCTCGTTGGTCTGGAGTCGATTCAGACCCGGATTGGATTGTGGGC
TTGAGAAACAAAAGATTGATACCCTCGCACTTCCAATTTCATTTCGGGCA
TGTTGGCATGACAGGGGTATGGGGATATCCGAGAAACAGACTAGACAAAT
CGCTATTTCGGTATGTGGTTGCGCCGCTAGCGTTGGAGCGGGAGCCGTTC
GATGTCTGCCTCGTCGATGATGGCGGGTAGCCTGTGTTTGCATCAGCTTC
CTCCAGCAATGAGCACGGGAGCTGATATGGAGAGGGTTCGTGTCATGGTA
CACGATTACGACCGCATCAAATGGAACTATCAGGTTCTTGAAAAGGAGAT
TGCAGTCCTCGAGACGCGTTCAAACAAGCTTGCGGTGTTCAAGCCCAAGC
CTGACATTGGGGAGGGGGAGATTGGGAAACTATACCTGCGTCACATTGAT
AACCGTGATAGATGACGCAAGGATATGTACTGTCATGGAGCTGCCATAGT
GAGAAAAAAGACTTGAATTCTGGCTGGGAGAAATGACTTTTCCAAGTGTG
TGAAAAAACAAATAAATAAAAAATCACACCTGAATCAAAATTACGAAAGC
AAAAGTTCTAGCTGGTGCTGGTTGTATTCGTCTCTTTTCCCGCAGATACC
CCATTTTAAAGCACGACAGACACGATCCCCTCCCGAGTCGCAAGGGGGAT
TGATCTGTTTCGACAAGGGTTGAAAGTAGCGCGTATCGTAAACCCAAGTT
GTTGCAGCGACACATTAAGCTGAAGCTGCTTGTATCGTCCCATCGAATCT
GTTTCGTAGAGTTTGGGCTCCAGAAATCATGTAGTGATCACAGATCCAGG
AGCTCAGCTGACCACGATGCCTTTTTCGAGCATCCTTCTAAAGTAATATC
GGTACGCGAAGCCCTTTTC
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protein sequence of rna915

>rna915-protein ID=rna915-protein|Name=rna915|organism=Nannochloropsis gaditana|type=polypeptide|length=679bp
MFGVLPRFLDALVLIARSLGSVPRERRTPNLRVSLRELGRRLLPSNLVYV
PVGNPYNRVWRLHASESFAFSTKERVPCLVCLEVVDYAPSPRRHGPCGGE
KGGGRKWWKQVMDGVGEGMPSISHTFKFGDKEWTLKIGEPRREEEGEAGE
ETRGGEADERDGTAQLGKWEPLLPADPSMVPDVPRLMRRVSSSVGVDGLA
ATLDAGGMGQWASEVAAEGGEGGRREGGEHVLLNVSQLRQAQEQGQCEES
KEAQRGQGTIASPEAVGGKAEWKGEAGLGEDLNESALGAAQPAVVEDYGT
FSPGTSPGKRRLERAREGRERERGRGRGSPRTEVPAPVHTDTSGFGGQGA
GRRSGSSSGTLGMEGLEAKACDPSSTLSPAAAAVQPPVIFKERWKEKEAR
LRGRSEIGHLPGWRLVPVIVKANDDLRQEQFASQLLGQIAHVLRQAEVPV
WVRPYGIIATSFDGGLIEAIPDTVSLDALRRNDPSYTTLPDFFQRFFGAR
QPDGELALARARQCFLESLAAYSIVCFLLQVKDRHNGNILLDAEGHVIHI
DFGFLLASSPGNVKFERAPFKLTAEMVDVLGGPRSAAFRRFRELCVKTFL
ELRRQRHKIILLVEMAMNANDNLPCFGGRPAAAVEALRQRFQPELNDRAC
GDFVNGLIDDSVGSWSTRWYDVYQRAFVL
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mRNA from alignment at CM002456.1:719345..722615+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna915 ID=rna915|Name=rna915|organism=Nannochloropsis gaditana|type=mRNA|length=3271bp|location=Sequence derived from alignment at CM002456.1:719345..722615+ (Nannochloropsis gaditana)
CAAGACCGAGAGCCTCCGGGGCCTCTGGAACGACCTGGGCCGGGctcggg ggggcgaggccgccgccttcaacCTCCTGCTTCGCCTCTTCACCTACGAG GACGTGCTGGGCGATATGGACGAGGCCTTCGCGCAAgagccctcctccgt cgagTTCTACATCCCGCAGCtcgccaccttcctcctctacggGGCCTTCT GGTCGAGCGGGAGCTTGCAGGCCTTCCTGCTTGACAAGAGCGCTCGCTCC ATCCAGTTCGCGCACCGGCTGTACTGGTTCCTGCTCGCGTCCTGCTTGGA TGGCTCGGGCATCGACCAGGAGGGCCGCCGGCAGGTGGGCACGCTCatcg aggaggtgaggagccGAGGCCAGCGGGCGGCGCGGCGGCTGGAGCAGGGC CGGACCGTGCAGGAGCTCTACCCCTCCCGGGGCAGCTCGTCGGCCCTGCA GCGCCCTACGCAGGCTTCCCGCCGGTGGGGCCGGGGAACGCGAAGCCGTG ACAGCTACTTCTCCAAGGAccgcgcctcctctgccaccaccacgagcGCC TCGAGCCTGGgtcgggccccgccccccccgcccgggaGACGGGGatgcgc aggaggaggggaccaCCTACGTGGACGTGGCGCGGCTTGGAGAGACGCCG CAGGCACCGTCCTGGTCCCCGTCGGAGCAAGGAGATGCGCAGagggcctc ggcgtcctcgccgcccctcccgccccccgtccgcctGAGTggaccctccg cccccggggGGGACTCGCCGTACTCGCCCGTCGcgcgctttcccctccat ctgTGCCGATACCAGGGCACCGACGACGACATGTTCGGCGTGCTCCCCCG CTTTCTCGACGCGCTCGTCCTCATCGCCCGCTCCTTGGGCAGCGTCCCCC GAGAGAGGCGGACTCCGAACCTGCGGGTCTCCCTCCGCGAGCTCGgccgg cgcctcctcccgtccaaCCTGGTGTATGTCCCCGTCGGCAACCCCTACAA CCGCGTCTGGCGCCTGCATGCCTCCGagtccttcgccttctcgaCCAAGG AGCGCGTGCCCTGCCTCGTGtgcctggaggtggtggactaCGCCCCAAGT CCCCGGCGGCACGGTCCCTGCGGGGGCgaaaaggggggcgggaggaagtg gtggaagCAGGTGATggacggggtgggggagggcatgcCGTCTATCTCGC ACACCTTTAAATTTGGAGACAAGGAGTGGACGTTGAAAATCGGCGAGccc aggcgggaggaggagggggaggctggggaggagacgaggggcggggaggc ggacgagaggGACGGCACTGCTCAGCTGGGAAAGTGGGAGCCGTTGCTTC CAGCGGATCCGTCCATGGTCCCGGATGTGCCTCGCTTGATGCGCcgcgtt tcctcctctgtgGGGGTAGATGGGCTTGCAGCCAccctggacgcgggcgg gATGGGGCAGTGGGCGAGCGAGGtggcggccgagggaggggaggggggaa ggcgagaaggaggggagcatgTGCTCTTGAATGTCAGTCAGCTCCGACAA GCCCAGGAGCAGGGGCAATGTGAGGAGAGTAAGGAGGCACAGCGGGGACA GGGGACCATAGCATCCCCTGAGGCggtaggggggaaggcggagtggaagg gggaggccgggctgGGGGAAGACTTGAATGAAAGCGCGCTGGGAGCGGCG CAGCCGGCGGTCGTGGAAGACTACGGCACCTTCTCCCCGGGCACGTCCCC CGGGAAGAGGCGGCTTGAGAGGGCGCGCgaagggcgagagagagagcggg gccggggccgtgggagTCCGCGGACGGAGGTCCCTGCTCCGGTCCACACA GACACGAGCGGCTTCGGCGGCCAAGGTGCtggcaggagaagcggcAGCAG CTCAGGCACGCTTGGCATGGAGGGTCTAGAGGCGAAGGCCTGCGACCCGT CCtcgaccctctcccccgcagCCGCGGCTGTACAGCCTCCCGTCATCTTC AAAGAGCgctggaaagagaaggaggctcgCCTCCGCGGGCGGTCGGAAAT CGGACACCTCCCGGGCTGGCGCCTAGTGCCGGTCATTGTCAAGGCCAACG ACGACCTCCGTCAGGAGCAATTCGCCAGCCAGCTGCTGGGCCAGATTGCC CACGTGCTTCGCCAGGCCGAGGTGCCGGTCTGGGTACGCCCCTACGGGAT AATCGCCACGTCCTTCGACGGGGGCTTGATCGAAGCCATTCCTGACACGG TCTCCCTGGACGCCTTGCGCCGAAACGACCCCTCCTACACCACCCTGCCT GATTTCTTCCAGCGTTTTTTCGGGGCGCGTCAACCCGACGGAGAGCTTGC GCTGGCTCGTGCGCGCCAGTGCTTTTTGGAGTCCCTGGCCGCCTACAGCA TtgtctgcttcctccttcaggTCAAGGACCGGCACAACGGGAACATTCtc ctggacgcggaggggCACGTGATTCACATTGACTTTGGCTTCCTACTGGC CAGCTCTCCCGGGAACGTGAAGTTCGAGCGGGCGCCGTTCAAGCTGACGG CAGAGATGGTGGACGTATTGGGCGGACCGCGTTCGGCAGCATTTCGTCGC TTCCGAGAGCTGTGCGTCAAGACCTTCTTGGAGCTCCGACGGCAGAGGCA CAAGATCATCCTgctggtggagatggccATGAACGCCAACGACAACTTGC CATGCTTCGGGGGGCGTCCGGCTGCGGCGGTTGAGGCCCTGCGGCAGCGG TTCCAGCCCGAGTTGAACGACCGCGCGTGCGGCGACTTTGTGAACGGGCT CATCGACGACAGCGTCGGGAGCTGGTCTACGCGCTGGTACGATGTCTACC AGCGGGCCTTTGTATTGTAGAACGGGGGAGGCAAGATACTGTGTATGGAg atggtggggaggtggtggcagGGCTCGGGGAAGGGCAGCTTGCAGTAGCC GAGTGCTTCACGCTCTCGCCTTTTGCACGTCGGCGTTCGCATGAACCCTT CCGCGAAGCGCCTGAGGCTGCCGACCATGACTGTGGAGATATCAGCCAAA AGTAGTGTAAATAGAAATTGAACGCAACCTCCTGCCATAATATTTTCCGG TACATTTTGCTGCTTTAGAAATGCCACGACAGCTAGGCATTTCCGAGCCA GACGGCTATTCGGTCACACAACGCTCCAAAACCTCTTTGCCCCCTTCCGT AATCGCTATCCTGCCAGGCATATATCCTCTCTTCTGGCTTTTCACTCGCT TCGTCCCTCTCACTATACACA
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Coding sequence (CDS) from alignment at CM002456.1:719345..722615+

>rna915 ID=rna915|Name=rna915|organism=Nannochloropsis gaditana|type=CDS|length=2040bp|location=Sequence derived from alignment at CM002456.1:719345..722615+ (Nannochloropsis gaditana)
ATGTTCGGCGTGCTCCCCCGCTTTCTCGACGCGCTCGTCCTCATCGCCCG
CTCCTTGGGCAGCGTCCCCCGAGAGAGGCGGACTCCGAACCTGCGGGTCT
CCCTCCGCGAGCTCGgccggcgcctcctcccgtccaaCCTGGTGTATGTC
CCCGTCGGCAACCCCTACAACCGCGTCTGGCGCCTGCATGCCTCCGagtc
cttcgccttctcgaCCAAGGAGCGCGTGCCCTGCCTCGTGtgcctggagg
tggtggactaCGCCCCAAGTCCCCGGCGGCACGGTCCCTGCGGGGGCgaa
aaggggggcgggaggaagtggtggaagCAGGTGATggacggggtggggga
gggcatgcCGTCTATCTCGCACACCTTTAAATTTGGAGACAAGGAGTGGA
CGTTGAAAATCGGCGAGcccaggcgggaggaggagggggaggctggggag
gagacgaggggcggggaggcggacgagaggGACGGCACTGCTCAGCTGGG
AAAGTGGGAGCCGTTGCTTCCAGCGGATCCGTCCATGGTCCCGGATGTGC
CTCGCTTGATGCGCcgcgtttcctcctctgtgGGGGTAGATGGGCTTGCA
GCCAccctggacgcgggcgggATGGGGCAGTGGGCGAGCGAGGtggcggc
cgagggaggggaggggggaaggcgagaaggaggggagcatgTGCTCTTGA
ATGTCAGTCAGCTCCGACAAGCCCAGGAGCAGGGGCAATGTGAGGAGAGT
AAGGAGGCACAGCGGGGACAGGGGACCATAGCATCCCCTGAGGCggtagg
ggggaaggcggagtggaagggggaggccgggctgGGGGAAGACTTGAATG
AAAGCGCGCTGGGAGCGGCGCAGCCGGCGGTCGTGGAAGACTACGGCACC
TTCTCCCCGGGCACGTCCCCCGGGAAGAGGCGGCTTGAGAGGGCGCGCga
agggcgagagagagagcggggccggggccgtgggagTCCGCGGACGGAGG
TCCCTGCTCCGGTCCACACAGACACGAGCGGCTTCGGCGGCCAAGGTGCt
ggcaggagaagcggcAGCAGCTCAGGCACGCTTGGCATGGAGGGTCTAGA
GGCGAAGGCCTGCGACCCGTCCtcgaccctctcccccgcagCCGCGGCTG
TACAGCCTCCCGTCATCTTCAAAGAGCgctggaaagagaaggaggctcgC
CTCCGCGGGCGGTCGGAAATCGGACACCTCCCGGGCTGGCGCCTAGTGCC
GGTCATTGTCAAGGCCAACGACGACCTCCGTCAGGAGCAATTCGCCAGCC
AGCTGCTGGGCCAGATTGCCCACGTGCTTCGCCAGGCCGAGGTGCCGGTC
TGGGTACGCCCCTACGGGATAATCGCCACGTCCTTCGACGGGGGCTTGAT
CGAAGCCATTCCTGACACGGTCTCCCTGGACGCCTTGCGCCGAAACGACC
CCTCCTACACCACCCTGCCTGATTTCTTCCAGCGTTTTTTCGGGGCGCGT
CAACCCGACGGAGAGCTTGCGCTGGCTCGTGCGCGCCAGTGCTTTTTGGA
GTCCCTGGCCGCCTACAGCATtgtctgcttcctccttcaggTCAAGGACC
GGCACAACGGGAACATTCtcctggacgcggaggggCACGTGATTCACATT
GACTTTGGCTTCCTACTGGCCAGCTCTCCCGGGAACGTGAAGTTCGAGCG
GGCGCCGTTCAAGCTGACGGCAGAGATGGTGGACGTATTGGGCGGACCGC
GTTCGGCAGCATTTCGTCGCTTCCGAGAGCTGTGCGTCAAGACCTTCTTG
GAGCTCCGACGGCAGAGGCACAAGATCATCCTgctggtggagatggccAT
GAACGCCAACGACAACTTGCCATGCTTCGGGGGGCGTCCGGCTGCGGCGG
TTGAGGCCCTGCGGCAGCGGTTCCAGCCCGAGTTGAACGACCGCGCGTGC
GGCGACTTTGTGAACGGGCTCATCGACGACAGCGTCGGGAGCTGGTCTAC
GCGCTGGTACGATGTCTACCAGCGGGCCTTTGTATTGTAG
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Synonyms
Publications